BAC Information

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BAC

Clone NameB6Ng01-182E08
Chromosome11 (Build37)
Map Location 103,978,582 - 104,117,680
singlet/doubletdoublet
Overlap geneCrhr1, 4933407P14Rik, Mapt
Upstream geneHexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream gene1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182E08.bB6Ng01-182E08.g
ACCGA008210GA008211
length1,124923
definitionB6Ng01-182E08.b B6Ng01-182E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,978,582 - 103,979,700)(104,116,762 - 104,117,680)
sequence
gaattccagattggggatgcagctcagtttgtaatatatttacccagtag
catcctaagtttgattcccagcactgcataaactgcacttagtgattcct
gcctgcaatcccagcccctaaagcagaaagatcaggggttcaaggccatc
ctcagtttcacaagttcaaggccagcctggccctgttttcttctaccatg
gcaaggttgtctcctccctgccccaagccttgcctacagtaggtgcccat
cccaacagactgaacagtgataacatgctttgggagccaatgagggcttt
gaacctttggggttcatcccctaaggttgtagtcacggccttcagctctg
gagtgggactaggttttccaggtttggcaattgcaacttcacatcatggc
ggagcctacccaaagaggaaggggacgctacagaggtagtagcatggtga
ccagaggtgtcagggaggctgactccatgtgccagctcctaggggaccag
agcagctgctgttcttctctggggacatgagaggctggggatcatgaggc
ccagtactgttacatggagctgaatgagttgcaggaactgatctacccag
gtccaatcagaggcagtgctacccacccacctagtcctccatccaccaag
gcccaggttccatacacatctggggaccaggaactttgccacccacagaa
attactctgtggtgggatccctgtgggaaatgggtgtgaacagttaacca
gggagccataaaagcgcattcgcactgggtagtggtgtcaccacctttaa
tcccagcacttgggaaatgctggatctatgtgagttcaggtcaacctgat
ctacagagcgagttccaggacagacaggggtacacagggaaaccctgtct
taaaaaaaaaatcacattccctaatgggccagggaagattattggagttt
ggcttgcagaattctgagtgcttgttgaacaagtgattggaattcaccaa
gaaaggagcacctggctagtggccgtgagaacagccctacaggctagtgc
gaagaatgctcacagactccagctgggagcagatttcagtttagagagat
cactcctaccgtgaaggttgagag
gaattcatggacaaggacaattgcttctgggatgtctctaccactggctc
tgtaccaggctttccacaggtaaggggtatcctaaaggaatactctctcc
tgatggaaatccagatgtagcgtcacatgtctataatcccagcacttgag
agatggggcaggaggcagaagttcaaggctagccctgtctacatgagatc
cagtctcaaaccaaaacaacaaagagatggctcattgcttaagaacactt
gttatagccaggcgtggtggcacacacctttaatcccagcacttgggagg
cagaggcagggggatttctgagttcgaggccagcctggtctacaaagtga
gttccaggacagccagggctatacagagaaaccctgtctcggaaaacaaa
aatccaaacaaacaaaaaacaaaacaaacaaacaaaacaaaacaaaagaa
cacttgttatgtttgcagagaacagggcttgattctcagcacccacatgg
ggtcacaacaatccctaagtccagttccaaggttttctatgtcttcttct
gaccacctcaggcataggcatgagcgtggtgcacagacatccatgtgtgc
aaaacactcatatacctaaaataaataaatctaaagtggtttgtttctgt
ttttgcttttttaagattaaaaaaaaaacccaaacaatggagaaattctt
aagagtcttgatccaatattttcaatttcctaacccaactattaggacaa
ataaagggatattaccagctaagtttcaccctaaaagcctatggagggaa
acagagtaagaaatgtcctcattcagatttcccttggattcatgttgagc
tgtgtctctgtcccgctatatggcaatcctgtgtgagttcacatccatgc
ttgttgttaaggtggtgctggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103978582_103979700
seq2: B6Ng01-182E08.b_42_1165

seq1  GAATTCCAGATTGGGGATGCAGCTCAGTTTGTAATATATTTACCCAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTGGGGATGCAGCTCAGTTTGTAATATATTTACCCAGTAG  50

seq1  CATCCTAAGTTTGATTCCCAGCACTGCATAAACTGCACTTAGTGATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAAGTTTGATTCCCAGCACTGCATAAACTGCACTTAGTGATTCCT  100

seq1  GCCTGCAATCCCAGCCCCTAAAGCAGAAAGATCAGGGGTTCAAGGCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAATCCCAGCCCCTAAAGCAGAAAGATCAGGGGTTCAAGGCCATC  150

seq1  CTCAGTTTCACAAGTTCAAGGCCAGCCTGGCCCTGTTTTCTTCTACCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTCACAAGTTCAAGGCCAGCCTGGCCCTGTTTTCTTCTACCATG  200

seq1  GCAAGGTTGTCTCCTCCCTGCCCCAAGCCTTGCCTACAGTAGGTGCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTGTCTCCTCCCTGCCCCAAGCCTTGCCTACAGTAGGTGCCCAT  250

seq1  CCCAACAGACTGAACAGTGATAACATGCTTTGGGAGCCAATGAGGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGACTGAACAGTGATAACATGCTTTGGGAGCCAATGAGGGCTTT  300

seq1  GAACCTTTGGGGTTCATCCCCTAAGGTTGTAGTCACGGCCTTCAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTGGGGTTCATCCCCTAAGGTTGTAGTCACGGCCTTCAGCTCTG  350

seq1  GAGTGGGACTAGGTTTTCCAGGTTTGGCAATTGCAACTTCACATCATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGACTAGGTTTTCCAGGTTTGGCAATTGCAACTTCACATCATGGC  400

seq1  GGAGCCTACCCAAAGAGGAAGGGGACGCTACAGAGGTAGTAGCATGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTACCCAAAGAGGAAGGGGACGCTACAGAGGTAGTAGCATGGTGA  450

seq1  CCAGAGGTGTCAGGGAGGCTGACTCCATGTGCCAGCTCCTAGGGGACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTGTCAGGGAGGCTGACTCCATGTGCCAGCTCCTAGGGGACCAG  500

seq1  AGCAGCTGCTGTTCTTCTCTGGGGACATGAGAGGCTGGGGATCATGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGCTGTTCTTCTCTGGGGACATGAGAGGCTGGGGATCATGAGGC  550

seq1  CCAGTACTGTTACATGGAGCTGAATGAGTTGCAGGAACTGATCTACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTGTTACATGGAGCTGAATGAGTTGCAGGAACTGATCTACCCAG  600

seq1  GTCCAATCAGAGGCAGTGCTACCCACCCACCTAGTCCTCCATCCACCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATCAGAGGCAGTGCTACCCACCCACCTAGTCCTCCATCCACCAAG  650

seq1  GCCCAGGTTCCATACACATCTGGGGACCAGGAACTTTGCCACCCACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTTCCATACACATCTGGGGACCAGGAACTTTGCCACCCACAGAA  700

seq1  ATTACTCTGTGGTGGGATCCCTGTGGGAAATGGGTGTGAACAGTTAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTGTGGTGGGATCCCTGTGGGAAATGGGTGTGAACAGTTAACCA  750

seq1  GGGAGCCATAAAAGCGCATTCGCACTGGGTAGTGGTGTCACCACCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCATAAAAGCGCATTCGCACTGGGTAGTGGTGTCACCACCTTTAA  800

seq1  TCCCAGCACTTGGGAAATGCTGGATCTATGTGAGTTCAAGGTCAACCTGA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCCAGCACTTGGGAAATGCTGGATCTATGTGAGTTC-AGGTCAACCTGA  849

seq1  TCTACAGAGCGAGTTCCAGGACAGACAGGGGTACACAGGGAAACCCTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGCGAGTTCCAGGACAGACAGGGGTACACAGGGAAACCCTGTC  899

seq1  TT-AAAAAAAAATCACATTCCCTAATGGGCCAGGGAAGAT--ATGGAGTT  947
      || |||||||||||||||||||||||||||||||||||||   |||||||
seq2  TTAAAAAAAAAATCACATTCCCTAATGGGCCAGGGAAGATTATTGGAGTT  949

seq1  TGGCTTGCAG-ATTCTGAGTGCTTGTTGAACAAGTGATTGAATTCCACCA  996
      |||||||||| ||||||||||||||||||||||||||||| | | |||||
seq2  TGGCTTGCAGAATTCTGAGTGCTTGTTGAACAAGTGATTGGAATTCACCA  999

seq1  AGAAAGAAGCA-CTGGCTAGTGGCCGTGAG-ACAGCCCTACAGCTTAGTG  1044
      |||||| |||| |||||||||||||||||| ||||||||||||  |||||
seq2  AGAAAGGAGCACCTGGCTAGTGGCCGTGAGAACAGCCCTACAGGCTAGTG  1049

seq1  CGAAGAA-GTTCACAGAC-CCAGCTGGGAAGCAGATTCAAGGTTTAAGAG  1092
      ||||||| | |||||||| ||||||||| ||||||||  ||  || ||||
seq2  CGAAGAATGCTCACAGACTCCAGCTGGG-AGCAGATTTCAG--TTTAGAG  1096

seq1  AGATCACTCCAGCCGTG-AGGTTGAGGG  1119
      ||||||||||  ||||| |||||||| |
seq2  AGATCACTCCTACCGTGAAGGTTGAGAG  1124

seq1: chr11_104116762_104117680
seq2: B6Ng01-182E08.g_62_984 (reverse)

seq1  GTCCAGCACCACC-TAACAACATGCATGGATGTAAACTTCACACAGGATT  49
      ||||||||||||| |||||||| |||||||||| ||| ||||||||||||
seq2  GTCCAGCACCACCTTAACAACAAGCATGGATGTGAAC-TCACACAGGATT  49

seq1  GCCATATAGCGGGACAGAGACACAGCTCAACATGAATCCAA-GGAAATCT  98
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCATATAGCGGGACAGAGACACAGCTCAACATGAATCCAAGGGAAATCT  99

seq1  GAATGAGGACATTTCTTACTCTGTTTCCCTCCATAGGCTTTTA-GGTGAA  147
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATGAGGACATTTCTTACTCTGTTTCCCTCCATAGGCTTTTAGGGTGAA  149

seq1  ACTTAGCTGGTAATATCCCTTTATTTGTCCTAATAGTTGGGTTAGG-AAT  196
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTAGCTGGTAATATCCCTTTATTTGTCCTAATAGTTGGGTTAGGAAAT  199

seq1  TGAAAATATTGGATCAAGACTCTTAAGAATTTCTCCATTGTTTGGG-TTT  245
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAAAATATTGGATCAAGACTCTTAAGAATTTCTCCATTGTTTGGGTTTT  249

seq1  TTTTTTAATCTTAAAAAAGCAAAAACAGAAACAAACCACTTTAGATTTAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATCTTAAAAAAGCAAAAACAGAAACAAACCACTTTAGATTTAT  299

seq1  TTATTTTAGGTATATGAGTGTTTTGCACACATGGATGTCTGTGCACCACG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGGTATATGAGTGTTTTGCACACATGGATGTCTGTGCACCACG  349

seq1  CTCATGCCTATGCCTGAGGTGGTCAGAAGAAGACATAGAAAACCTTGGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTATGCCTGAGGTGGTCAGAAGAAGACATAGAAAACCTTGGAA  399

seq1  CTGGACTTAGGGATTGTTGTGACCCCATGTGGGTGCTGAGAATCAAGCCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTAGGGATTGTTGTGACCCCATGTGGGTGCTGAGAATCAAGCCC  449

seq1  TGTTCTCTGCAAACATAACAAGTGTTCTTTTGTTTTGTTTTGTTTGTTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGCAAACATAACAAGTGTTCTTTTGTTTTGTTTTGTTTGTTTG  499

seq1  TTTTGTTTTTTGTTTGTTTGGATTTTTGTTTTCCGAGACAGGGTTTCTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTGTTTGTTTGGATTTTTGTTTTCCGAGACAGGGTTTCTCT  549

seq1  GTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  599

seq1  AACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTG  649

seq1  TGTGCCACCACGCCTGGCTATAACAAGTGTTCTTAAGCAATGAGCCATCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCACGCCTGGCTATAACAAGTGTTCTTAAGCAATGAGCCATCT  699

seq1  CTTTGTTGTTTTGGTTTGAGACTGGATCTCATGTAGACAGGGCTAGCCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTTTTGGTTTGAGACTGGATCTCATGTAGACAGGGCTAGCCTT  749

seq1  GAACTTCTGCCTCCTGCCCCATCTCTCAAGTGCTGGGATTATAGACATGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTGCCTCCTGCCCCATCTCTCAAGTGCTGGGATTATAGACATGT  799

seq1  GACGCTACATCTGGATTTCCATCAGGAGAGAGTATTCCTTTAGGATACCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTACATCTGGATTTCCATCAGGAGAGAGTATTCCTTTAGGATACCC  849

seq1  CTTACCTGTGGAAAGCCTGGTACAGAGCCAGTGGTAGAGACATCCCAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGTGGAAAGCCTGGTACAGAGCCAGTGGTAGAGACATCCCAGAA  899

seq1  GCAATTGTCCTTGTCCATGAATTC  919
      ||||||||||||||||||||||||
seq2  GCAATTGTCCTTGTCCATGAATTC  923