BAC Information

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BAC

Clone NameB6Ng01-182G01
Chromosome11 (Build37)
Map Location 115,800,190 - 115,973,831
singlet/doubletdoublet
Overlap geneSap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47
Upstream geneCd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik
Downstream geneTrim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182G01.bB6Ng01-182G01.g
ACCGA008285GA008286
length1,071926
definitionB6Ng01-182G01.b B6Ng01-182G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,972,776 - 115,973,831)(115,800,190 - 115,801,110)
sequence
gaattccaacccttgaaccctcatactaaataaactaaggggttggaggg
agggctccccagttaagagcactggctgctgtgctctgccaaaggcctgg
gatcccattcctagcgcccacaagggcactcaacactgttggtacctcca
gccccaggggatccagtgacctcttctgtcctgtgcacatggggcaaacg
cccatacatataaagatttttggtttggtttggtttttcgagacagggtt
tctctgtgttgccctggctattcttgaaactagctctgcagaccaggctg
gcctcaagtttaatgagatccacttgcctccaagtactgggattaaagac
gtgggtgcaccaacaccctctcagcagctggagattagccagctaccgtg
ggaagaactgcctccatgactccattatgttaactaaaagtgttggtttg
ccttctcttatgcgcaggcgcgtttgtctgcttgcctttaaattcaccgc
gtgcactgttcctcggaggccagaggagagcgctggatccctctaaactg
cagttacaggtggttgtaagcacaatgacgtgacatgaactgaacttgag
tcctcagcagaaataaccagtgctcttaacggatgagccttgtctacagc
ctcgcaaatggacgtgtacaccatggcatggtgacacacagatgtgatgg
tggcactttgggagggcacatgtaggtacatgagcaaggtagctcatttg
tcaccccgtcccatcccatcatcaaagactccatgctatggtacggctga
ccatggctgatgatcactctgactgtcttgggtaagctgtgtcagtgttt
cccactgagagagtgctcgctcgctcggtgcctttcagaagccatcgttg
cttagcacacagacaaggagttcactttggagagcctacaggaattattt
gggattctgctgaatagtttacacgtaactattaccatgggcacatcgaa
tggcttattttttttatcgagggtttgtacgaccactatttcaaccactt
ttgttttattcgtttggtttt
gaattcatagatgtgaactatgaaagggggcagtgtatctgctgaatata
tagcatgagctatatatcagatcagatgagctatccatcctcagatatgg
ccgtgcagccattggtataaactcagaaaggctgcagaagactcggaatg
tgttttaccgaggatgccaggagtagacagtgtggagcccagaaaccagg
tgcaaacgactttctgtgcagagtaaaaaacccaggctaagaactggcct
ggcaggagagcatggggcaggcttatggcttaaaactaaaggccacctag
agaagttggcatgcacttggctgtcaccccttcttcagtgctgtgatccc
agcagcaaaagcttttttttttaacgtcattttttattaaatattttctt
tatttacatttcaaatgttatcccctttcccctctgaaaacccccatccc
ttctcccctccccctgctcaccaacccacccactcccacttcctggccct
ggcagcccccatactggggcatagaaccttcacaggaccaaggccctctc
cttccgttgatgaccgactaggccatcctctgctacgtatgcagctggag
ccaacagcaaatttttgaggaaaggtacatccttgtgagataggcagccc
tgtggaacacaaaagacttactgctctctggaagagcagataataaagaa
caggggacacacacacacacacacacacgggtgtccactgatgccagaag
aggtgtcacttttctgggaactagagtttagagttgattgtgagctgtca
tgtgtgcactaggagtttggagtcttctgcaagaacagcaagtgctttta
ccctctgagccattctcccccagctctgttggattttatatgagaggatt
ttgttgtttctaaactttgatttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115972776_115973831
seq2: B6Ng01-182G01.b_43_1113 (reverse)

seq1  AAAACCAAACGAATAAA--CAAAGTGGGTGGAATAGTGTTGTTAC-AACC  47
      |||||||||||||||||   ||||||| || ||||||| |  ||| ||||
seq2  AAAACCAAACGAATAAAACAAAAGTGGTTGAAATAGTGGTCGTACAAACC  50

seq1  CTCGAT-AAAAAAATAAGC--ATCCATGTGCCCAT-GTGATAGTTACCTG  93
      |||||| ||||||||||||   || |||||||||| || |||||||| ||
seq2  CTCGATAAAAAAAATAAGCCATTCGATGTGCCCATGGTAATAGTTACGTG  100

seq1  T-AACTA-TCAGCAGAATCCCAAATAATTCCTGTAGGCTCTCCAAAGTG-  140
      | ||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAACTATTCAGCAGAATCCCAAATAATTCCTGTAGGCTCTCCAAAGTGA  150

seq1  ACTCCTTGTCTGTGTGCTAAGC-ACGATGGCTTCTG-AAGGCACCGAGCG  188
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  ACTCCTTGTCTGTGTGCTAAGCAACGATGGCTTCTGAAAGGCACCGAGCG  200

seq1  AGCGAGCACTCTCTCAGTGGG-AACACTGACACAGCTTACCC-AGACAGT  236
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  AGCGAGCACTCTCTCAGTGGGAAACACTGACACAGCTTACCCAAGACAGT  250

seq1  CAGAGTGATCATCAGCCATGGTCAGCCGTACCATAGCATGGAGTCTTTGA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGATCATCAGCCATGGTCAGCCGTACCATAGCATGGAGTCTTTGA  300

seq1  TGATGGGATGGGACGGGGTGACAAATGAGCTACCTTGCTCATGTACCTAC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGATGGGACGGGGTGACAAATGAGCTACCTTGCTCATGTACCTAC  350

seq1  ATGTGCCCTCCC-AAGTGCCACCATCACATCTGTGTGTCACCATGCCATG  385
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCTCCCAAAGTGCCACCATCACATCTGTGTGTCACCATGCCATG  400

seq1  GTGTACACGTCCATTTGCGAGGCTGTAGACAAGGCTCATCCGTTAAGAGC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACGTCCATTTGCGAGGCTGTAGACAAGGCTCATCCGTTAAGAGC  450

seq1  ACTGGTTATTTCTGCTGAGGACTCAAGTTCAGTTCATGTCACGTCATTGT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTATTTCTGCTGAGGACTCAAGTTCAGTTCATGTCACGTCATTGT  500

seq1  GCTTACAACCACCTGTAACTGCAGTTTAGAGGGATCCAGCGCTCTCCTCT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAACCACCTGTAACTGCAGTTTAGAGGGATCCAGCGCTCTCCTCT  550

seq1  GGCCTCCGAGGAACAGTGCACGCGGTGAATTTAAAGGCAAGCAGACAAAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCGAGGAACAGTGCACGCGGTGAATTTAAAGGCAAGCAGACAAAC  600

seq1  GCGCCTGCGCATAAGAGAAGGCAAACCAACACTTTTAGTTAACATAATGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGCGCATAAGAGAAGGCAAACCAACACTTTTAGTTAACATAATGG  650

seq1  AGTCATGGAGGCAGTTCTTCCCACGGTAGCTGGCTAATCTCCAGCTGCTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGAGGCAGTTCTTCCCACGGTAGCTGGCTAATCTCCAGCTGCTG  700

seq1  AGAGGGTGTTGGTGCACCCACGTCTTTAATCCCAGTACTTGGAGGCAAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGTTGGTGCACCCACGTCTTTAATCCCAGTACTTGGAGGCAAGT  750

seq1  GGATCTCATTAAACTTGAGGCCAGCCTGGTCTGCAGAGCTAGTTTCAAGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCATTAAACTTGAGGCCAGCCTGGTCTGCAGAGCTAGTTTCAAGA  800

seq1  ATAGCCAGGGCAACACAGAGAAACCCTGTCTCGAAAAACCAAACCAAACC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGGGCAACACAGAGAAACCCTGTCTCGAAAAACCAAACCAAACC  850

seq1  AAAAATCTTTATATGTATGGGCGTTTGCCCCATGTGCACAGGACAGAAGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTTATATGTATGGGCGTTTGCCCCATGTGCACAGGACAGAAGA  900

seq1  GGTCACTGGATCCCCTGGGGCTGGAGGTACCAACAGTGTTGAGTGCCCTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGGATCCCCTGGGGCTGGAGGTACCAACAGTGTTGAGTGCCCTT  950

seq1  GTGGGCGCTAGGAATGGGATCCCAGGCCTTTGGCAGAGCACAGCAGCCAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGCTAGGAATGGGATCCCAGGCCTTTGGCAGAGCACAGCAGCCAG  1000

seq1  TGCTCTTAACTGGGGAGCCCTCCCTCCAACCCCTTAGTTTATTTAGTATG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAACTGGGGAGCCCTCCCTCCAACCCCTTAGTTTATTTAGTATG  1050

seq1  AGGGTTCAAGGGTTGGAATTC  1056
      |||||||||||||||||||||
seq2  AGGGTTCAAGGGTTGGAATTC  1071

seq1: chr11_115800190_115801110
seq2: B6Ng01-182G01.g_64_989

seq1  GAATTCATAGATGTGAACTATGAAAGGGGGCAGTGTATCTGCTGAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGATGTGAACTATGAAAGGGGGCAGTGTATCTGCTGAATATA  50

seq1  TAGCATGAGCTATATATCAGATCAGATGAGCTATCCATCCTCAGATATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGAGCTATATATCAGATCAGATGAGCTATCCATCCTCAGATATGG  100

seq1  CCGTGCAGCCATTGGTATAAACTCAGAAAGGCTGCAGAAGACTCGGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCAGCCATTGGTATAAACTCAGAAAGGCTGCAGAAGACTCGGAATG  150

seq1  TGTTTTACCGAGGATGCCAGGAGTAGACAGTGTGGAGCCCAGAAACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACCGAGGATGCCAGGAGTAGACAGTGTGGAGCCCAGAAACCAGG  200

seq1  TGCAAACGACTTTCTGTGCAGAGTAAAAAACCCAGGCTAAGAACTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGACTTTCTGTGCAGAGTAAAAAACCCAGGCTAAGAACTGGCCT  250

seq1  GGCAGGAGAGCATGGGGCAGGCTTATGGCTTAAAACTAAAGGCCACCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGAGCATGGGGCAGGCTTATGGCTTAAAACTAAAGGCCACCTAG  300

seq1  AGAAGTTGGCATGCACTTGGCTGTCACCCCTTCTTCAGTGCTGTGATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGGCATGCACTTGGCTGTCACCCCTTCTTCAGTGCTGTGATCCC  350

seq1  AGCAGCAAAAGCTTTTTTTTTTAACGTCATTTTTTATTAAATATTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAAGCTTTTTTTTTTAACGTCATTTTTTATTAAATATTTTCTT  400

seq1  TATTTACATTTCAAATGTTATCCCCTTTCCCCTCTGAAAACCCCCATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATTTCAAATGTTATCCCCTTTCCCCTCTGAAAACCCCCATCCC  450

seq1  TTCTCCCCTCCCCCTGCTCACCAACCCACCCACTCCCACTTCCTGGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCTCCCCCTGCTCACCAACCCACCCACTCCCACTTCCTGGCCCT  500

seq1  GGCAGCCCCCATACTGGGGCATAGAACCTTCACAGGACCAAGGCCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCCCATACTGGGGCATAGAACCTTCACAGGACCAAGGCCCTCTC  550

seq1  CTTCCGTTGATGACCGACTAGGCCATCCTCTGCTACGTATGCAGCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTTGATGACCGACTAGGCCATCCTCTGCTACGTATGCAGCTGGAG  600

seq1  CCAACAGCAAATTTTTGAGGAAAGGTACATCCTTGTGAGATAGGCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCAAATTTTTGAGGAAAGGTACATCCTTGTGAGATAGGCAGCCC  650

seq1  TGTGGAACACAAAAGACTTACTGCTCTCTGGAAGAGCAGATAATAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACACAAAAGACTTACTGCTCTCTGGAAGAGCAGATAATAAAGAA  700

seq1  CAGGGGACACACACACACACACACACACGGGTGTCCACTGATGCCAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACACACACACACACACACACACGGGTGTCCACTGATGCCAGAAG  750

seq1  AGGTGTCACTTTTCT-GGAACTAGAGTTTAGAGTTGATTGTGAGCTGTCA  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGTGTCACTTTTCTGGGAACTAGAGTTTAGAGTTGATTGTGAGCTGTCA  800

seq1  GGTGTGCACTAGGAG-TTGGAGTCTTCTGCAAGAACAGCAAGTGCTTTTA  848
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACTAGGAGTTTGGAGTCTTCTGCAAGAACAGCAAGTGCTTTTA  850

seq1  ACCTCTGAGCCA-TCT-CCCCAGCTCTGTTGGA-TTTATATGAGAGGATT  895
       ||||||||||| ||| |||||||||||||||| ||||||||||||||||
seq2  CCCTCTGAGCCATTCTCCCCCAGCTCTGTTGGATTTTATATGAGAGGATT  900

seq1  TTGTTG-TTCTAAACTTTTGATTTGAA  921
      |||||| |||||||| ||||||||| |
seq2  TTGTTGTTTCTAAAC-TTTGATTTGGA  926