BAC Information

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BAC

Clone NameB6Ng01-182P02
Chromosome11 (Build37)
Map Location 35,277,662 - 35,412,500
singlet/doubletdoublet
Overlap geneSlit3
Upstream geneDock2, EG574403, Dock2, Ccdc99, LOC100038976, LOC100039006
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182P02.bB6Ng01-182P02.g
ACCGA008698GA008699
length408563
definitionB6Ng01-182P02.b B6Ng01-182P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,277,662 - 35,278,075)(35,411,932 - 35,412,500)
sequence
ccagactccttgtgccaccagagcttaacaggttttctgctctcctgaaa
cactcatccttcatcccaaaggatgcctttgttcttccttcaagattgaa
cttgagtgttggttctcagaactacatgctatccccatatacccttgcag
cctcttgccttcctaccaccttcgtgtggacaagcccctccatagagaca
cttcctgaaggctaggcccacactagcccttcagccttgagtaatgctga
accatctgccagcagggttcacacagcctggcaattaaattgaagaagac
agcaaagccgcagtcttggggggggggggactgctgggaggcaaaccaag
cccatcaccccctgtctctgtagttgggtgtttgtagtctcttattcagc
ttacttcc

ctgagctgggtttgttttacatcatccatctagacagcagggctttgggc
atgcgggggcatctccagatggcgcaggcatagctgagttgaggcctggc
tcaatggggaggctgagaagtttcaccgtctcagatgatggcagcttcca
ctctccacccgcctgtcctttcctttcagatctaagaaggaaggaactca
ttttttttttcatttcattgttcagactcacggtgtcccctacactggtg
ctcactatttctgccttaatgtttggtgacttgagaagcctgggaaagac
cagcaccccgcagatctctaatcctagaactgagactctctgggcctctc
tatcatctcatggcagactttttttttttttttttttttttttttaaatg
tctcaggggtccagcctcctctttgatcaggaaacagatataaagagggc
ttggttcccttctgttagaacctcttctcttaggcccattggacacgcaa
actttatatgccccagtacaggggaacgccagggccaaaaagggggagtg
ggtgggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35277662_35278075
seq2: B6Ng01-182P02.b_44_457

seq1  GAATTCCCAGACTCCTTGTGCCACCAGAGCTTAACAGGTTTTCTGCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGACTCCTTGTGCCACCAGAGCTTAACAGGTTTTCTGCTCTC  50

seq1  CTGAAACACTCATCCTTCATCCCAAAGGATGCCTTTGTTCTTCCTTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACACTCATCCTTCATCCCAAAGGATGCCTTTGTTCTTCCTTCAAG  100

seq1  ATTGAACTTGAGTGTTGGTTCTCAGAACTACATGCTATCCCCATATACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTTGAGTGTTGGTTCTCAGAACTACATGCTATCCCCATATACCC  150

seq1  TTGCAGCCTCTTGCCTTCCTACCACCTTCGTGTGGACAAGCCCCTCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCTCTTGCCTTCCTACCACCTTCGTGTGGACAAGCCCCTCCATA  200

seq1  GAGACACTTCCTGAAGGCTAGGCCCACACTAGCCCTTCAGCCTTGAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTTCCTGAAGGCTAGGCCCACACTAGCCCTTCAGCCTTGAGTAA  250

seq1  TGCTGAACCATCTGCCAGCAGGGTTCACACAGCCTGGCAATTAAATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAACCATCTGCCAGCAGGGTTCACACAGCCTGGCAATTAAATTGAA  300

seq1  GAAGACAGCAAAGCCGCAGTCTTGGGGGGGGGGGGACTGCTGGGAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCAAAGCCGCAGTCTTGGGGGGGGGGGGACTGCTGGGAGGCAA  350

seq1  ACCAAGCCCATCACCCCCTGTCTCTGTAGTTGGGTGTTTGTTGTCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCAAGCCCATCACCCCCTGTCTCTGTAGTTGGGTGTTTGTAGTCTCTTA  400

seq1  TTCAGCTTACTTCC  414
      ||||||||||||||
seq2  TTCAGCTTACTTCC  414


seq1: chr11_35411932_35412500
seq2: B6Ng01-182P02.g_60_628 (reverse)

seq1  TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTG  50

seq1  GGGCATATAAAGTTTGCGTGTCCAATGGGCCTAAGAGAAGAGGTTCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATAAAGTTTGCGTGTCCAATGGGCCTAAGAGAAGAGGTTCTAAC  100

seq1  AGAAGGGAACCAAGCCCTCTTTATATCTGTTTCCTGATCAAAGAGGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAACCAAGCCCTCTTTATATCTGTTTCCTGATCAAAGAGGAGGC  150

seq1  TGGACCCCTGAGACATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCCTGAGACATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTG  200

seq1  CCATGAGATGATAGAGAGGCCCAGAGAGTCTCAGTTCTAGGATTAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGATGATAGAGAGGCCCAGAGAGTCTCAGTTCTAGGATTAGAGAT  250

seq1  CTGCGGGGTGCTGGTCTTTCCCAGGCTTCTCAAGTCACCAAACATTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGGTGCTGGTCTTTCCCAGGCTTCTCAAGTCACCAAACATTAAGG  300

seq1  CAGAAATAGTGAGCACCAGTGTAGGGGACACCGTGAGTCTGAACAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAGTGAGCACCAGTGTAGGGGACACCGTGAGTCTGAACAATGAA  350

seq1  ATGAAAAAAAAAATGAGTTCCTTCCTTCTTAGATCTGAAAGGAAAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAAAATGAGTTCCTTCCTTCTTAGATCTGAAAGGAAAGGACA  400

seq1  GGCGGGTGGAGAGTGGAAGCTGCCATCATCTGAGACGGTGAAACTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGTGGAGAGTGGAAGCTGCCATCATCTGAGACGGTGAAACTTCTCA  450

seq1  GCCTCCCCATTGAGCCAGGCCTCAACTCAGCTATGCCTGCGCCATCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCATTGAGCCAGGCCTCAACTCAGCTATGCCTGCGCCATCTGGA  500

seq1  GATGCCCCCGCATGCCCAAAGCCCTGCTGTCTAGATGGATGATGTAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCCCGCATGCCCAAAGCCCTGCTGTCTAGATGGATGATGTAAAAC  550

seq1  AAACCCAGCTCAGGAATTC  569
      |||||||||||||||||||
seq2  AAACCCAGCTCAGGAATTC  569


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