MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-183D21
Chromosome	11 (Build37)
Map Location	35,079,303 - 35,080,268
singlet/doublet	singlet
Overlap gene	Slit3
Upstream gene	Foxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream gene	LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Foxi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14233 MGI:1096329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94176 MGI:2149010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG574403 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:574403 MGI:3643491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94176 MGI:2149010
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc99 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70385 MGI:1917635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038976 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038976
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Slit3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20564 MGI:1315202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039006 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039006
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 1 Protein pseudo : _no_value

name	Pank3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211347 MGI:2387464
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666733 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666733
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins pseudo : _no_value

name	AI595406 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237730 MGI:3034689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104458 MGI:1914297
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wwc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211652 MGI:2388637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC636532 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:636532
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 Proteins pseudo : _no_value

name	Odz2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23964 MGI:1345184
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802758 GeneID:14233 MGI:1096329
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box I1 transcript_id : NM_023907.3

name	Dock2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553624 GeneID:94176 MGI:2149010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cyto-kinesis 2 transcript_id : NM_033374.2

name	EG574403 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701577 GeneID:574403 MGI:3643491
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG574403 transcript_id : NM_001025382.1

name	Dock2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117553624 GeneID:94176 MGI:2149010
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cyto-kinesis 2 transcript_id : NM_033374.2

name	Ccdc99 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22296586 GeneID:70385 MGI:1917635
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 99 transcript_id : NM_027411.1

name	LOC100038976 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261848 GeneID:100038976
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100038976 transcript_id : XM_001472048.1

name	Slit3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378369 GeneID:20564 MGI:1315202
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : slit homolog 3 (Drosophila) transcript_id : NM_011412.2

name	Pank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:139948619 GeneID:211347 MGI:2387464
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pantothenate kinase 3 transcript_id : NM_145962.2

name	AI595406 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802179 GeneID:237730 MGI:3034689
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI595406 transcript_id : NM_001004147.2

name	Rars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348387 GeneID:104458 MGI:1914297
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arginyl-tRNA synthetase transcript_id : NM_025936.2

name	Wwc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82524277 GeneID:211652 MGI:2388637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WW, C2 and coiled-coil domain containing 1 transcript_id : NM_170779.1

name	Odz2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7657414 GeneID:23964 MGI:1345184
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : odd Oz/ten-m homolog 2 (Drosophila) transcript_id : NM_011856.2

name	Foxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229265 CCDS:CCDS24539.1 GeneID:14233 MGI:1096329
definition	GO_component : GO:0005634 - nucleus [Evidence IC]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IDA] [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007605 - sensory perception of sound [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : forkhead homolog 10; HNF-3/forkhead homolog 3 product : forkhead box I1 protein_id : NP_076396.2

name	Dock2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553625 GeneID:94176 MGI:2149010
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0030675 - Rac GTPase activator activity [Evidence IMP] GO_process : GO:0046631 - alpha-beta T cell activation [Evidence IMP]; GO:0046633 - alpha-beta T cell proliferation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0001768 - establishment of T cell polarity [Evidence IMP]; GO:0001771 - formation of immunological synapse [Evidence IMP]; GO:0001766 - lipid raft polarization [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0035022 - positive regulation of Rac protein signal transduction [Evidence IC]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0042110 - T cell activation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy product : dedicator of cyto-kinesis 2 protein_id : NP_203538.2

name	EG574403 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701578 GeneID:574403 MGI:3643491
definition	codon_start : 1 product : hypothetical protein LOC574403 protein_id : NP_001020553.1

name	Dock2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117553625 GeneID:94176 MGI:2149010
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0030675 - Rac GTPase activator activity [Evidence IMP] GO_process : GO:0046631 - alpha-beta T cell activation [Evidence IMP]; GO:0046633 - alpha-beta T cell proliferation [Evidence IMP]; GO:0006935 - chemotaxis [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0001768 - establishment of T cell polarity [Evidence IMP]; GO:0001771 - formation of immunological synapse [Evidence IMP]; GO:0001766 - lipid raft polarization [Evidence IMP]; GO:0045060 - negative thymic T cell selection [Evidence IMP]; GO:0035022 - positive regulation of Rac protein signal transduction [Evidence IC]; GO:0045059 - positive thymic T cell selection [Evidence IMP]; GO:0042110 - T cell activation [Evidence IMP]; GO:0042098 - T cell proliferation [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy product : dedicator of cyto-kinesis 2 protein_id : NP_203538.2

name	Ccdc99 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22296587 CCDS:CCDS24541.1 GeneID:70385 MGI:1917635
definition	codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 99 protein_id : NP_081687.1

name	LOC100038976 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261849 GeneID:100038976
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472098.1

name	Slit3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83523732 CCDS:CCDS24542.1 GeneID:20564 MGI:1315202
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005102 - receptor binding [Evidence TAS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IDA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IGI] [Evidence IMP] codon_start : 1 exception : mismatches in translation product : slit homolog 3 protein_id : NP_035542.1

name	Pank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122397 CCDS:CCDS24543.1 GeneID:211347 MGI:2387464
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004594 - pantothenate kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0015937 - coenzyme A biosynthesis [Evidence IEA] codon_start : 1 product : pantothenate kinase 3 protein_id : NP_666074.1

name	AI595406 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51921297 GeneID:237730 MGI:3034689
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 product : hypothetical protein LOC237730 protein_id : NP_001004147.1

name	Rars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19882225 CCDS:CCDS24544.1 GeneID:104458 MGI:1914297
definition	GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : arginyl-tRNA synthetase protein_id : NP_080212.1

name	Wwc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82524278 CCDS:CCDS24545.1 GeneID:211652 MGI:2388637
definition	codon_start : 1 product : WW, C2 and coiled-coil domain containing 1 protein_id : NP_740749.1

name	Odz2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657415 CCDS:CCDS24546.1 GeneID:23964 MGI:1345184
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; teneurin 2 product : odd Oz/ten-m homolog 2 isoform 1 protein_id : NP_035986.2

name	LOC636532 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636532
definition	number : 1 pseudo : _no_value

name	LOC636532 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636532
definition	number : 2 pseudo : _no_value

name	LOC636532 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636532
definition	number : 3 pseudo : _no_value

name	LOC636532 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636532
definition	number : 4 pseudo : _no_value

name	LOC636532 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636532
definition	number : 5 pseudo : _no_value

name	LOC636532 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636532
definition	number : 6 pseudo : _no_value

name	LOC100039006 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261851 GeneID:100039006
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 1 Protein product : similar to ribosomal protein L21 pseudo : _no_value transcript_id : XR_030636.1

name	LOC666733 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261850 GeneID:666733
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins product : similar to ribosomal protein L7a pseudo : _no_value transcript_id : XR_030553.1

clone name	MSMg01-335H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138C24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-183D21.b
ACC	GA008923
length	1,102
definition	B6Ng01-183D21.b
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcccctacttggagctggcttgtgctctgtccctgacatgcactct gtcaagggctgtctgatttcattattttcttgtaccttaaatgtttgacg cccgatcatgcgtgtgcgtgtccactaatgatggtataccgaatgtcaag tttcagtagactcatgagcaatactcagtaggtcgacttaaatgtgcaaa acggctagggtctcatccaccttgctagagccatcaaggtgcctggtgac ccactgaggacaactttcttccccaggcgggtgatagagatttttagttt aaccgtttaaccaagctccagttaaagtcctaggattacatgaaaccagc atgagaagcctgacgagagagcaaagaaggcaagctaactcggcctgggg cctggggcttggggagaggcatggcagcttttttgttttgttttttgttt ttttgttgttttgttttgttttgtttactccctttctatatcatatcctc tagaggagagctgaaaaaaaaaagcaatctgcagatgcgatagacatgaa cagaagcacgagagaagtttgtagctgctattaaaagaattgggaaagag gcaccctagtaaagaaatgatgcctggcaatacacactcaactcttggaa cactgcacaaatccatgactacaatgttatcaaaagagaatgaataagga gcccagacttctaccctcacctgcctgtgacaatgtgcataggtccccat tgaagaaaaccacaaaaggccaggttgggggagaggacttactcctgcta ggcagtaagagaatctccccacaccagatgtcatgaagaccacatagggt agcttagtctgatttgggtgacatcacctttgggatgagtcaggaagatg gggaggcactgcttcgccataaagaagcttccttccttcccgaagaggct tgtgggatggtgtaaaaagccattcacctgctagggaaattcccatggtg ctagtggaagaatgagagctgaaggtctctattcctttgagcagttactc ggagaattccttatatgcccgaagattcagtggagaccagcaacacgttg ga
quality values	Open. Hide. 49 29 19 25 33 30 18 30 19 9 13 16 23 19 17 23 9 18 10 9 15 10 10 10 10 11 14 11 12 11 11 11 11 10 24 14 9 15 13 18 13 12 13 18 10 8 10 20 13 16 19 16 15 16 13 24 12 13 15 16 13 11 13 12 13 16 24 26 11 14 13 12 13 13 10 12 13 18 23 18 18 23 13 13 11 11 13 12 13 13 13 30 24 13 14 16 19 20 13 18 23 18 12 8 16 10 34 18 12 27 13 13 24 13 24 15 11 13 10 12 24 18 12 10 12 12 13 13 13 26 15 24 27 23 12 18 24 19 24 30 30 30 34 34 49 40 30 24 23 34 37 38 38 50 43 34 48 59 46 54 59 62 49 56 62 62 54 49 59 54 49 54 62 62 62 62 62 48 42 62 59 62 62 62 62 59 59 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 59 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 30 30 23 25 27 30 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 54 54 62 62 62 62 59 62 62 62 62 62 62 62 59 59 59 56 62 62 59 59 54 62 62 62 62 62 54 54 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 59 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 49 43 50 27 28 28 33 36 59 50 54 46 59 59 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 54 62 62 62 62 62 62 62 35 43 49 49 49 62 62 62 56 62 56 62 62 62 62 62 62 62 56 54 62 62 62 56 62 62 47 50 46 56 56 62 62 62 62 62 62 62 62 56 51 56 38 36 56 62 56 54 62 62 62 56 62 62 62 62 56 46 38 30 56 56 62 62 56 62 62 56 62 62 56 50 62 43 47 62 62 62 62 62 62 62 52 62 54 62 49 42 54 62 62 47 62 42 31 38 62 62 52 62 62 62 62 62 42 31 47 43 52 62 62 45 42 40 52 54 46 58 39 54 54 54 54 54 43 52 45 39 49 58 58 58 44 58 48 58 52 54 58 54 52 41 47 50 52 52 48 49 54 27 54 42 31 25 42 42 54 26 40 52 58 52 50 34 52 40 27 37 52 52 47 54 35 58 34 38 54 52 19 52 54 52 41 58 58 37 46 58 51 45 23 49 33 58 51 51 50 38 38 47 34 41 38 27 30 47 49 51 49 40 49 58 46 29 32 35 30 40 50 58 51 47 49 24 50 34 30 41 52 24 58 58 50 31 52 50 50 48 54 27 58 51 44 28 20 40 23 50 32 37 39 24 42 39 21 48 15 18 40 48 50 50 58 51 43 30 32 11 31 23 46 29 25 49 32 24 33 29 40 43 31 39 32 33 25 22 49 37 31 28 31 9 26 11 33 16 49 9 14 29 45 32 41 37 40 26 34 22 31 42 22 14 21 25 37 47 40 15 25 32 17 22 14 33 21 40 23 33 18 50 9 5 12 13 25 30 31 37 53 15 19 12 19 26 21 26 21 8 54 15 35 54 16 30 44 27 21 26 37 33 15 51 42 33 54 41 34 46 32 16 25 23 45 10 41 28 29 18 21 33 27 23 31 22 29 37 27 6 14 26 21 9 31 40 34 34 32 38 16 17 5 8 14 16 19 5 9 18 25 41 42 13 18 21 32 15 21 9 7 23 19 24 23 11 21 21 13 33 27 10 8 6 46 9 11 6 9 21 41 42 27 18 6 32 32 12 17 21 16 42 46 40 17 7 16 19 8 10 15 12 7 21 10 9 19 9 6 11 6 8 9 11 23 26 16 9 19 22 15 6 26 25 14 5 6 6 11 15 5 9 13 25 9 18 11 9 24 12 12 29 5 7 14 27 31 19 22 10 18 19 11 11 12 25 21 13 44 32 18 27 8 47 28 6 20 15 26 25 23 6 5 16 14 11 17 8 7 7 5 6 25 9 12 29 32 5 5 4 4 8 12 15 9 31 12 4 6 20 6 21 8 27 12 13 12 17 17 12 4 5 16 12 12 8 10 11 32 17 9 4 3 3 5 3 9 5 5

Alignment Information

BAC End 1

BAC End 2

seq1: chr11_35079303_35080268
seq2: B6Ng01-183D21.b_163_1144 (reverse)

seq1  TCCAACCTTGTTCTGGTCTCCACTG-ATC-TCTGGCATATTAGG-ATTCT  47
      |||||| |  | ||||||||||||| ||| || ||||||| ||| |||||
seq2  TCCAACGTGTTGCTGGTCTCCACTGAATCTTCGGGCATATAAGGAATTCT  50

seq1  C--GGTTACTGCT-AAAGGAATAGAGACC-TCAGCTCTCAT--CTCCACT  91
      |   || |||||| ||||||||||||||| |||||||||||   ||||||
seq2  CCGAGTAACTGCTCAAAGGAATAGAGACCTTCAGCTCTCATTCTTCCACT  100

seq1  AGGCACCATGGGTATTT-CCTAGCAGGTG-ATGGCTTTTTACACC-TCCC  138
      | |||||||||| |||| ||||||||||| ||||||||||||||| ||||
seq2  A-GCACCATGGGAATTTCCCTAGCAGGTGAATGGCTTTTTACACCATCCC  149

seq1  AC-AGCCTCTTCGGGAAGG-AGGAAGCTTCTTTATGGCGAAGCAGTGCCT  186
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAAGCCTCTTCGGGAAGGAAGGAAGCTTCTTTATGGCGAAGCAGTGCCT  199

seq1  -CCCATCTTCCTGACTCATCCCAAAGGTGATGTCACCC-AATCAGACTAA  234
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCCATCTTCCTGACTCATCCCAAAGGTGATGTCACCCAAATCAGACTAA  249

seq1  GCTA-CCTATGTGGTCTTCATGACATCTGGTGTGGGGAGATTCTCTTACT  283
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTATGTGGTCTTCATGACATCTGGTGTGGGGAGATTCTCTTACT  299

seq1  GCCTAGCAGGAGTAAGTCCTCTCCCCCAACCTGGCCTTTTGTGGTTTTCT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCAGGAGTAAGTCCTCTCCCCCAACCTGGCCTTTTGTGGTTTTCT  349

seq1  TCAATGGGGACCTATGCACATTGTCACAGGCAGGTGAGGGTAGAAGTCTG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGGGACCTATGCACATTGTCACAGGCAGGTGAGGGTAGAAGTCTG  399

seq1  GGCTCCTTATTCATTCTCTTTTGATAACATTGTAGTCATGGATTTGTGCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTATTCATTCTCTTTTGATAACATTGTAGTCATGGATTTGTGCA  449

seq1  GTGTTCCAAGAGTTGAGTGTGTATTGCCAGGCATCATTTCTTTACTAGGG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCAAGAGTTGAGTGTGTATTGCCAGGCATCATTTCTTTACTAGGG  499

seq1  TGCCTCTTTCCCAATTCTTTTAATAGCAGCTACAAACTTCTCTCGTGCTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTTCCCAATTCTTTTAATAGCAGCTACAAACTTCTCTCGTGCTT  549

seq1  CTGTTCATGTCTATCGCATCTGCAGATTGCTTTTTTTTTTCAGCTCTCCT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATGTCTATCGCATCTGCAGATTGCTTTTTTTTTTCAGCTCTCCT  599

seq1  CTAGAGGATATGATATAGAAAGGGAGTAAACAAAACAAAACAAAACAACA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGATATGATATAGAAAGGGAGTAAACAAAACAAAACAAAACAACA  649

seq1  AAAAAACAAAAAACAAAACAAAAAAGCTGCCATGCCTCTCCCCAAGCCCC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAACAAAACAAAAAAGCTGCCATGCCTCTCCCCAAGCCCC  699

seq1  AGGCCCCAGGCCGAGTTAGCTTGCCTTCTTTGCTCTCTCGTCAGGCTTCT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCAGGCCGAGTTAGCTTGCCTTCTTTGCTCTCTCGTCAGGCTTCT  749

seq1  CATGCTGGTTTCATGTAATCCTAGGACTTTAACTGGAGCTTGGTTAAACG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGTTTCATGTAATCCTAGGACTTTAACTGGAGCTTGGTTAAACG  799

seq1  GTTAAACTAAAAATCTCTATCACCCGCCTGGGGAAGAAAGTTGTCCTCAG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTAAAAATCTCTATCACCCGCCTGGGGAAGAAAGTTGTCCTCAG  849

seq1  TGGGTCACCAGGCACCTTGATGGCTCTAGCAAGGTGGATGAGACCCTAGC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACCAGGCACCTTGATGGCTCTAGCAAGGTGGATGAGACCCTAGC  899

seq1  CGTTTTGCACATTTAAGTCGACCTACTGAGTATTGCTCATGAGTCTACTG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGCACATTTAAGTCGACCTACTGAGTATTGCTCATGAGTCTACTG  949

seq1  AAACTTGACATTCGGTATACCATCATTAGTGGA  966
      |||||||||||||||||||||||||||||||||
seq2  AAACTTGACATTCGGTATACCATCATTAGTGGA  982

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information