BAC Information

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BAC

Clone NameB6Ng01-183E03
Chromosome11 (Build37)3 (Build37)
Map Location 33,335,034 - 33,335,18696,187,367 - 96,188,292
singlet/doubletsingletsinglet
Overlap geneRanbp17
Upstream geneUbtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, LOC666258, Anp32c, LOC669306
Downstream geneLOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183E03.bB6Ng01-183E03.g
ACCGA008934GA008935
length1,053924
definitionB6Ng01-183E03.b B6Ng01-183E03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,335,034 - 33,335,186)(96,187,367 - 96,188,292)
sequence
gaattctctggtaaatctaatagaggacgttgacagatctcacaatgatt
aataagattattcaccaatgggttccctgcagcctggaatcccattgcct
tccttgttgcctaaggaatggtctatcatagtgattgatctaaaagatta
ttttttcacaattcctctacatgaacacaataaggagaggtttgctttct
tagtacctacctttaatagacgttgtccaataaaaagatatcattggaaa
gtcctaccaaaaggaatgttaaatagtcccaccttatgccaatattttgt
acccaaagaaatgatatttggcaaatggatgtgttccattttacagagtt
tggtaaactgaaatatgtgcaccacactatagacacatatctaggatttc
aatgggcaaccgccttagctccagaaaaggctgattctgtcattaaacat
ttattagacgttatggccattatgggaatacccacacaaattaaagtgga
cagaggtctggcatatgtctctaataggatgaagcagttttctatataat
ataaaacatgttacaggcataccacacaatcctacaggacaagcaatcga
ggagagatctaatcacactgtaaaggagatgcttaacaggcagaggggca
acaaaaccccagacatagattacaacatgctttattaaccttaaggcttt
caaatgctaatgaacaaaaaaagtatggctgctgaaagagattgaattgt
gggaaaatctgctgaactaaaccagcctgtttattttaaggatgttctga
catcagaatggaaaatgggaaatgtgttacgctgggggaggggctatgcc
tatgttcccacgggaaaaagaaaagctgtgggttcctttcaagttgataa
aaatcagacatgagggctggagagatgactcagtggttaagagcatttaa
aggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatccg
taatgagatctgacgccctcttctggtgcagctgagacagctacagtgta
ctt
gaattcctggtcagcctaacttatataaggaggaggtcagcctaatttat
atagcgatctctagcccagctatataaatagtgagaccctgtcttaaaaa
aaaaaaaaaaaaagaaaaagaaaaaaagaaaaagaaaaaaaaaaaagcaa
tcaaaaaacggttttcacccctagggatcctgcctgaggtttctcagtat
cgctgcactgcagcatttgagtaagaagtcaggtttccaacgactcacca
gcgaacattccttttgtgggaagaccactgcttacttaatttgaggcttc
tgcgaagactaggtttcatcaagaaattctctaataaggagcaaaagaga
cggctcagaatgagagctcttcgaagaatccaggtgtgactcccaacaac
cacacaagaactgtcttccgatctttgctcccggtgggtccgcgcagcgt
cccaaacagaggcaggggagataaacaaaacccttacaaactcttaccaa
tgatttccctcttgggtattttttggtaacaaattataaggaaaaagtgc
gaacgcagctctaaataatacaaagtcagggaaccgatttcctcgctttt
gtggaagttgcaggaatcagcacatcccagatgcaataaatgagtctctt
cctagaagatccccaccccccaccgtataacagtgttttcccgccgagta
cttatgtttttgttttgttttttttaccttcagcctctttagccccgcgc
tctgaacgcaccgccactttacaatgcacgctggagagcctaaccggaca
cgcttttacgttgtttctctgctcgccccgcgagacctgcgctctctccc
acgccgtgaaattcccgcgattccaaagcgggcacggacaccgaagccct
tagcacccttttatgtacatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_33335034_33335186
seq2: B6Ng01-183E03.b_957_1096 (reverse)

seq1  AAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGTGCGTCAGATCTC  50
      |||||||||||||||||| |||| | ||||||||||| ||||||||||||
seq2  AAGTACACTGTAGCTGTC-TCAGCTGCACCAGAAGAGGGCGTCAGATCTC  49

seq1  GTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCAG  100
       |||||||||||||||||||||||||||||||||||||||||||||   |
seq2  ATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGG  99

seq1  ACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAG  150
      ||||| | |            |||||||| |||||||| |||||| ||||
seq2  ACCTTTAAA------------TGCTCTTAACCACTGAGTCATCTCTCCAG  137

seq1  CCC  153
      |||
seq2  CCC  140

seq1: chr3_96187367_96188292
seq2: B6Ng01-183E03.g_72_995

seq1  GAATTCCTGGTCAGCCTAACTTATATAAGGAGGAGGTCAGCCTAATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCAGCCTAACTTATATAAGGAGGAGGTCAGCCTAATTTAT  50

seq1  ATAGCGATCTCTAGCCCAGCTATATAAATAGTGAGACCCTGTCTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGATCTCTAGCCCAGCTATATAAATAGTGAGACCCTGTCTTAAAAA  100

seq1  AAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAAAAAAAAAAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAAAAAAAAAAAGCAA  150

seq1  TCAAAAAACGGTTTTCACCCCTAGGGATCCTGCCTGAGGTTTCTCAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAACGGTTTTCACCCCTAGGGATCCTGCCTGAGGTTTCTCAGTAT  200

seq1  CGCTGCACTGCAGCATTTGAGTAAGAAGTCAGGTTTCCAACGACTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCACTGCAGCATTTGAGTAAGAAGTCAGGTTTCCAACGACTCACCA  250

seq1  GCGAACATTCCTTTTGTGGGAAGACCACTGCTTACTTAATTTGAGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACATTCCTTTTGTGGGAAGACCACTGCTTACTTAATTTGAGGCTTC  300

seq1  TGCGAAGACTAGGTTTCATCAAGAAATTCTCTAATAAGGAGCAAAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGACTAGGTTTCATCAAGAAATTCTCTAATAAGGAGCAAAAGAGA  350

seq1  CGGCTCAGAATGAGAGCTCTTCGAAGAATCCAGGTGTGACTCCCAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCAGAATGAGAGCTCTTCGAAGAATCCAGGTGTGACTCCCAACAAC  400

seq1  CACACAAGAACTGTCTTCCGATCTTTGCTCCCGGTGGGTCCGCGCAGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGAACTGTCTTCCGATCTTTGCTCCCGGTGGGTCCGCGCAGCGT  450

seq1  CCCAAACAGAGGCAGGGGAGATAAACAAAACCCTTACAAACTCTTACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAGAGGCAGGGGAGATAAACAAAACCCTTACAAACTCTTACCAA  500

seq1  TGATTTCCCTCTTGGGTATTTTTTGGTAACAAATTATAAGGAAAAAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCTCTTGGGTATTTTTTGGTAACAAATTATAAGGAAAAAGTGC  550

seq1  GAACGCAGCTCTAAATAATACAAAGTCAGGGAACCGATTTCCTCGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCAGCTCTAAATAATACAAAGTCAGGGAACCGATTTCCTCGCTTTT  600

seq1  GTGGAAGTTGCAGGAATCAGCACATCCCAGATGCAATAAATGAGTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTTGCAGGAATCAGCACATCCCAGATGCAATAAATGAGTCTCTT  650

seq1  CCTAGAAGATCCCCACCCCCCACCGTATAACAGTGTTTTCCCGCCGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGATCCCCACCCCCCACCGTATAACAGTGTTTTCCCGCCGAGTA  700

seq1  CTTATGTTTTTGTTTTTGTTTTTTTTACCTTCAGCCTCTTTAGCCCCGCG  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTTTTG-TTTTGTTTTTTTTACCTTCAGCCTCTTTAGCCCCGCG  749

seq1  CTCTGAACGCACCGCCACTTTACAATGCACGCTGGAGAGCCTAACCGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACGCACCGCCACTTTACAATGCACGCTGGAGAGCCTAACCGGAC  799

seq1  ACGCTTTTACGTTGTTCCTCTGCTCCGCCCCGCGAGACCTGCGCTCTCTC  850
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  ACGCTTTTACGTTGTTTCTCTGCT-CGCCCCGCGAGACCTGCGCTCTCTC  848

seq1  CCACGCCGTGAAATTCCCCGCGATTCCAAAGCGGGCACGGACACCGAAGC  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCACGCCGTGAAATT-CCCGCGATTCCAAAGCGGGCACGGACACCGAAGC  897

seq1  CCTAAGCACCC-TTTATGTACATAGAT  926
      ||| ||||||| |||||||||||||||
seq2  CCTTAGCACCCTTTTATGTACATAGAT  924