BAC Information

Click to search

BAC

Clone NameB6Ng01-183I17
Chromosome11 (Build37)
Map Location 58,387,626 - 58,554,170
singlet/doubletdoublet
Overlap geneOlfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1
Downstream geneOlfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183I17.bB6Ng01-183I17.g
ACCGA009140GA009141
length1,1681,205
definitionB6Ng01-183I17.b B6Ng01-183I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,552,998 - 58,554,170)(58,387,626 - 58,388,827)
sequence
gaattccaaatgtttcaccgttgtagaaactatctgcagctggcaaaacc
acatccctgctagagcatgaggcaaatcatagtcacctgctttgaaacaa
ccccatgtccccacacctgattaaaaacaaaacatatccccataatattt
ctgtgcttttcaaagaaaagaaaatcctcactacacccccaacattagat
tcctttgtcctaagctataactctcaagttgtgtctataaataccaatgc
ctgtatttccagcagactagatgagttctttacagaactaatttcataaa
tatttttctctcctccagcccccgtctcctgaatcaagtcaccagtttaa
taaatgaattacctaaataggccagttttctcagagcactggaaaggccc
agaatcaagaacgctaggtgaagatggagtgtggcactggccctacccac
tagtctcacatggatgggcagctcatacttgtagcatcccacggggcaga
gaaacttgaatcagtagaatttgataaacttgcccctctatccaagtcag
cccctcggtttgtgactgggtctctgccactctatgctactgcatgtgaa
ggaaagggtgtagacaacccacatgtgtgcaaatagctggggactcacca
agtacacagttgctaggcattttctattaattttttctcttcacagtaat
attaaaacaaggacacaggtctgtggagggcattcagtggctaacacttg
cctggctatatgaggtcctagagtctattcacaattccacagagaaataa
taaatatatgcatatttacaaggaaatcatggagctcaagataatgttca
gtgtctgaagctaaaatataaatctgtatatgtcaacatttttgcaaatt
cagtagtaaaaataaagaaatagaagatcacctgcaaactcattaactga
atcttcttgttaatttacttataacatcccttctaacatctagaaaccag
gctcttttcttgacataaagtattgattaaaaatttttaaaaagactgat
ttcagtgatcttgggtttaaaagatgtgtgacccggtctgggtgaaattt
ttctagtgttcctcaagtggacttggttatttaagcacacaggtaatcct
tgtggaataagagaaaaa
gaattcagcttctgctatgcatttgtctccagaggagcaaatgttaaaag
gaaatggcaaataaagttttcttcagaaagaggaggatttctatacaata
acacttatgtctaaatgaagatggctaaattcttccagaattcaaagaat
aaatacaaatttggaaagtctaaacaggtcacagagggcctgagtaactt
acgtagagtatgtagaagataagccttaaagatcattaagagatgttaat
caaaaatttaaggtccaagttcaaccaagcatcgattgaaatcgttagag
tcctctaaagtgcctggtcttctcttggaaacccctataagggccgattt
aataagcaaaagggggtgtttctcctctaaaacagtatttgaacatacaa
tatatcaaacagtaccagacaggtgctgggtattgattaaccgtacttgg
aggcctatactgacgtagacagagggattaaaggggcaatgatgcttact
ctagtccttcaacatcatctaggttctcagggactgtgacgcatctttta
aaagatcccatggttctactgagtcactgtcctcttgtacaatgaggcca
ctgaggctccccagtgtgggcgccaatccgtgtacattctacaaagaaga
gagtcaacgaggagggacacgctctcaatgcttccaaagaaaaccctgac
ctatccccaacagatggcacaactggttacaaaaagaaaaaagaaagaaa
aaaggccaatagacctaggaactcctgcctagactaaatgacagctttaa
cagaaaaataaatgtttatgttggctctcagtgtattcttaaacacctga
ctgcaactgtagccatggagtagtcataagacatggcagccagagggaaa
aattctgaccctgctagtgtcaggtagagaaacatctgcattcccacagg
cagcagctgagatcttgttggctcccaggacctggtccatgagcatcttg
ggcaccagtgaacagaaatgtaacatcatgtccatgagggacagctggct
gataaaaaagtacatggtgttgtggaagtgggtgttcaaagagtatcagc
aggatcagaaggcgttccagaactagtctatcagaaagtgcctataggac
tcagtagcatggtcaggggtattgattgtactgaagagtctcgctacgag
gtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58552998_58554170
seq2: B6Ng01-183I17.b_46_1213 (reverse)

seq1  TTTTTCTCTTATT-CACAAGAATTA-CTGTGTGGCTTTAAAATAAACAAG  48
      ||||||||||||| |||||| |||| |||||| ||||  |||||| ||||
seq2  TTTTTCTCTTATTCCACAAGGATTACCTGTGT-GCTT--AAATAACCAAG  47

seq1  T-CACTTGAGGAACAACTAGAAAAATTTCACCCAGAACGGGGTCACACAT  97
      | |||||||||||| |||||||||||||||||||| || |||||||||||
seq2  TCCACTTGAGGAAC-ACTAGAAAAATTTCACCCAG-ACCGGGTCACACAT  95

seq1  CTTTTAAAACCCAAGATCCACTGAAATTCAGTCTTTTTAAAAATTTTTAA  147
      ||||| ||||||||||| |||||||| |||||||||||||||||||||||
seq2  CTTTT-AAACCCAAGAT-CACTGAAA-TCAGTCTTTTTAAAAATTTTTAA  142

seq1  TCAATACTTTTATGTCAAG-AAAGAGCCTGGTTTTCTAGATGTTAGAA-G  195
      ||||||| ||||||||||| ||||||||||| |||||||||||||||| |
seq2  TCAATAC-TTTATGTCAAGAAAAGAGCCTGG-TTTCTAGATGTTAGAAGG  190

seq1  GATGTTATAAGTAAATTAACAAGAAGATTCAGTTAATGAGTTTGCAGGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATAAGTAAATTAACAAGAAGATTCAGTTAATGAGTTTGCAGGTG  240

seq1  ATCTTCTATTTCTTTATTTTTACTACTGAATTTGCAAAAATGTTGACATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTATTTCTTTATTTTTACTACTGAATTTGCAAAAATGTTGACATA  290

seq1  TACAGATTTATATTTTAGCTTCAGACACTGAACATTATCTTGAGCTCCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTTATATTTTAGCTTCAGACACTGAACATTATCTTGAGCTCCAT  340

seq1  GATTTCCTTGTAAATATGCATATATTTATTATTTCTCTGTGGAATTGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTGTAAATATGCATATATTTATTATTTCTCTGTGGAATTGTGA  390

seq1  ATAGACTCTAGGACCTCATATAGCCAGGCAAGTGTTAGCCACTGAATGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCTAGGACCTCATATAGCCAGGCAAGTGTTAGCCACTGAATGCC  440

seq1  CTCCACAGACCTGTGTCCTTGTTTTAATATTACTGTGAAGAGAAAAAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGACCTGTGTCCTTGTTTTAATATTACTGTGAAGAGAAAAAATT  490

seq1  AATAGAAAATGCCTAGCAACTGTGTACTTGGTGAGTCCCCAGCTATTTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAATGCCTAGCAACTGTGTACTTGGTGAGTCCCCAGCTATTTGC  540

seq1  ACACATGTGGGTTGTCTACACCCTTTCCTTCACATGCAGTAGCATAGAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGGGTTGTCTACACCCTTTCCTTCACATGCAGTAGCATAGAGT  590

seq1  GGCAGAGACCCAGTCACAAACCGAGGGGCTGACTTGGATAGAGGGGCAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGACCCAGTCACAAACCGAGGGGCTGACTTGGATAGAGGGGCAAG  640

seq1  TTTATCAAATTCTACTGATTCAAGTTTCTCTGCCCCGTGGGATGCTACAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAATTCTACTGATTCAAGTTTCTCTGCCCCGTGGGATGCTACAA  690

seq1  GTATGAGCTGCCCATCCATGTGAGACTAGTGGGTAGGGCCAGTGCCACAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCTGCCCATCCATGTGAGACTAGTGGGTAGGGCCAGTGCCACAC  740

seq1  TCCATCTTCACCTAGCGTTCTTGATTCTGGGCCTTTCCAGTGCTCTGAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTCACCTAGCGTTCTTGATTCTGGGCCTTTCCAGTGCTCTGAGA  790

seq1  AAACTGGCCTATTTAGGTAATTCATTTATTAAACTGGTGACTTGATTCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCCTATTTAGGTAATTCATTTATTAAACTGGTGACTTGATTCAG  840

seq1  GAGACGGGGGCTGGAGGAGAGAAAAATATTTATGAAATTAGTTCTGTAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGGGGCTGGAGGAGAGAAAAATATTTATGAAATTAGTTCTGTAAA  890

seq1  GAACTCATCTAGTCTGCTGGAAATACAGGCATTGGTATTTATAGACACAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATCTAGTCTGCTGGAAATACAGGCATTGGTATTTATAGACACAA  940

seq1  CTTGAGAGTTATAGCTTAGGACAAAGGAATCTAATGTTGGGGGTGTAGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGTTATAGCTTAGGACAAAGGAATCTAATGTTGGGGGTGTAGTG  990

seq1  AGGATTTTCTTTTCTTTGAAAAGCACAGAAATATTATGGGGATATGTTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCTTTTCTTTGAAAAGCACAGAAATATTATGGGGATATGTTTT  1040

seq1  GTTTTTAATCAGGTGTGGGGACATGGGGTTGTTTCAAAGCAGGTGACTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATCAGGTGTGGGGACATGGGGTTGTTTCAAAGCAGGTGACTAT  1090

seq1  GATTTGCCTCATGCTCTAGCAGGGATGTGGTTTTGCCAGCTGCAGATAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTCATGCTCTAGCAGGGATGTGGTTTTGCCAGCTGCAGATAGT  1140

seq1  TTCTACAACGGTGAAACATTTGGAATTC  1173
      ||||||||||||||||||||||||||||
seq2  TTCTACAACGGTGAAACATTTGGAATTC  1168

seq1: chr11_58387626_58388827
seq2: B6Ng01-183I17.g_70_1274

seq1  GAATTCAGCTTCTGCTATGCATTTGTCTCCAGAGGAGCAAATGTTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCTGCTATGCATTTGTCTCCAGAGGAGCAAATGTTAAAAG  50

seq1  GAAATGGCAAATAAAGTTTTCTTCAGAAAGAGGAGGATTTCTATACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCAAATAAAGTTTTCTTCAGAAAGAGGAGGATTTCTATACAATA  100

seq1  ACACTTATGTCTAAATGAAGATGGCTAAATTCTTCCAGAATTCAAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATGTCTAAATGAAGATGGCTAAATTCTTCCAGAATTCAAAGAAT  150

seq1  AAATACAAATTTGGAAAGTCTAAACAGGTCACAGAGGGCCTGAGTAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAATTTGGAAAGTCTAAACAGGTCACAGAGGGCCTGAGTAACTT  200

seq1  ACGTAGAGTATGTAGAAGATAAGCCTTAAAGATCATTAAGAGATGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGAGTATGTAGAAGATAAGCCTTAAAGATCATTAAGAGATGTTAAT  250

seq1  CAAAAATTTAAGGTCCAAGTTCAACCAAGCATCGATTGAAATCGTTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTTAAGGTCCAAGTTCAACCAAGCATCGATTGAAATCGTTAGAG  300

seq1  TCCTCTAAAGTGCCTGGTCTTCTCTTGGAAACCCCTATAAGGGCCGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAAAGTGCCTGGTCTTCTCTTGGAAACCCCTATAAGGGCCGATTT  350

seq1  AATAAGCAAAAGGGGGTGTTTCTCCTCTAAAACAGTATTTGAACATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCAAAAGGGGGTGTTTCTCCTCTAAAACAGTATTTGAACATACAA  400

seq1  TATATCAAACAGTACCAGACAGGTGCTGGGTATTGATTAACCGTACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAACAGTACCAGACAGGTGCTGGGTATTGATTAACCGTACTTGG  450

seq1  AGGCCTATACTGACGTAGACAGAGGGATTAAAGGGGCAATGATGCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATACTGACGTAGACAGAGGGATTAAAGGGGCAATGATGCTTACT  500

seq1  CTAGTCCTTCAACATCATCTAGGTTCTCAGGGACTGTGACGCATCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTTCAACATCATCTAGGTTCTCAGGGACTGTGACGCATCTTTTA  550

seq1  AAAGATCCCATGGTTCTACTGAGTCACTGTCCTCTTGTACAATGAGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCCATGGTTCTACTGAGTCACTGTCCTCTTGTACAATGAGGCCA  600

seq1  CTGAGGCTCCCCAGTGTGGGCGCCAATCCGTGTACATTCTACAAAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTCCCCAGTGTGGGCGCCAATCCGTGTACATTCTACAAAGAAGA  650

seq1  GAGTCAACGAGGAGGGACACGCTCTCAATGCTTCCAAAGAAAACCCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACGAGGAGGGACACGCTCTCAATGCTTCCAAAGAAAACCCTGAC  700

seq1  CTATCCCCAACAGATGGCACAACTGGTTACAAAAAGAAAAAAGAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCAACAGATGGCACAACTGGTTACAAAAAGAAAAAAGAAAGAAA  750

seq1  AAAGGCCAATAGACCTAGGAACTCCTGCCTAGACTAAATGACAGCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAATAGACCTAGGAACTCCTGCCTAGACTAAATGACAGCTTTAA  800

seq1  CAGAAAAATAAATGTTTATGTTGGCTCTCAGTGTATTCTTAAACACCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATAAATGTTTATGTTGGCTCTCAGTGTATTCTTAAACACCTGA  850

seq1  CTGCAACTGTAGCCATGGAGTAGTCATAAGACATGGCAGCCAGAGGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTGTAGCCATGGAGTAGTCATAAGACATGGCAGCCAGAGGGAAA  900

seq1  AATTCTGACCCTGCTAGTGTCAGGTAGAGAAACATCTGCA-TCCCACAGG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATTCTGACCCTGCTAGTGTCAGGTAGAGAAACATCTGCATTCCCACAGG  950

seq1  CAGCAGCTGAGATCTTG-TGGCTCCCCAGGACCTGGTCCATGAGCATCTT  998
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CAGCAGCTGAGATCTTGTTGGCT-CCCAGGACCTGGTCCATGAGCATCTT  999

seq1  GGGCA-CAGTG-ACAGAAATGT-ACATCATGTCCATGAGGGACAGCTGGC  1045
      ||||| ||||| |||||||||| |||||||||||||||||||||||||||
seq2  GGGCACCAGTGAACAGAAATGTAACATCATGTCCATGAGGGACAGCTGGC  1049

seq1  TGATAAAAAAGTACATGGGTGTGTGGAGGTGGGTG-TCAGAGAGTATCAG  1094
      ||||||||||||||||||   |||||| ||||||| ||| ||||||||||
seq2  TGATAAAAAAGTACATGGTGTTGTGGAAGTGGGTGTTCAAAGAGTATCAG  1099

seq1  CAGGATCAGGAGGGCGTTCCCAGACAAGGCCATCAGGAAAAGCACAAATA  1144
      |||||||| || ||||||||   || || | |||||  ||||  |  |||
seq2  CAGGATCA-GAAGGCGTTCCAGAACTAGTCTATCAG--AAAGTGCCTATA  1146

seq1  TGACCACAGTAAGCA-GGGCAGGGTGTTTGGATTG-ACTGAAGAGTCCCG  1192
       || | |||| |||| || ||||| || | ||||| ||||||||||| ||
seq2  GGA-CTCAGT-AGCATGGTCAGGG-GTATTGATTGTACTGAAGAGTCTCG  1193

seq1  CTA--GGGTGAG  1202
      |||   ||||||
seq2  CTACGAGGTGAG  1205