BAC Information

Click to search

BAC

Clone NameB6Ng01-183J11
Chromosome11 (Build37)
Map Location 75,199,097 - 75,385,547
singlet/doubletdoublet
Overlap geneSmyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2
Upstream geneGarnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1
Downstream genePitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183J11.bB6Ng01-183J11.g
ACCGA009176GA009177
length483943
definitionB6Ng01-183J11.b B6Ng01-183J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,199,097 - 75,199,579)(75,384,606 - 75,385,547)
sequence
caagggatgcagtgcctctggcatccttgggtacgtcactcatgtgcaca
catacacatttggtttttaatcttaggaactccaagtgggccaatgagat
ggctccatgtataaaggcagttatgcaaaggtctggatgacatgagttca
gtcttcagattctgcaagataacaggagaggaccaacccctgcgagttgt
cctctgacctcagtacacatgtcatggtacgtgtgtagtatgcacatgca
cagaagtcccagcactcgggaggcagaggcaggaggatctctgagtttta
ggccagcctggtctacaaaacgatttacagttatataaagaaactctgtt
ttgaaaaacaaaacaggggttggggatttagctcagtggtagagcgcttg
cctagcaagcgcaaggccctgggttcagtcctcaactctggaagagagag
agagagagggagagggaaagggagagggagagg
gaattcaccccagaatcggatccagagaggccagttttctcctccttccc
ggtcaccatccaccagggacccctgactgggtactgtccaacgttcccac
actacctgttgtccttgggcccccttcccaggagcagaatggagagacac
cctgacccttcttacccacagagggtctcctcccagaggacccatcatgg
ccagatacagcggctgctgcaggagagcaaagagcgcactgaccagggac
tgcagtccagtgaggctaccaaactgtgtggaggggtacctgttggggca
atgagacccatcacagccagcacgggtgacaggcttccccagtccctcac
tggcctggcttaggtatactggtaaccagggctgcaccactggtgcctgc
agggagaggcggtatcagcctcaggcccctcaggctccagactctggagc
aagcctctcctttactcagatgtgcccttagcctgtgggtgtggggctgc
gcagggtggaaagcatggtgccagcagagtctgtggcttgggttggaggc
tgaccctggctctgctgtctcccccccccacccccctccaggagcgttgc
acaatcacggaaactcagcatcacagctcctgcccgactccctcataccc
tgccagggcagccacaacttcctccaggcttggggaacgggaggggggta
caacgagggggacaggcagacctggaatgaccctgtaggatgaggcttaa
agagggaagtagctctggccttaatctcggggaacaccaggctctgccag
agaggtacgaggggctatattcacagtcacagatggtggatgatggaact
cggttcaatttgtgggccagccctgggcattagagggagagcaaggtggt
tagagccttcttgggatagatgtaagttccactagcttggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_75199097_75199579
seq2: B6Ng01-183J11.b_54_536

seq1  CAAGGGATGCAGTGCCTCTGGCATCCTTGGGTACGTCACTCATGTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATGCAGTGCCTCTGGCATCCTTGGGTACGTCACTCATGTGCACA  50

seq1  CATACACATTTGGTTTTTAATCTTAGGAACTCCAAGTGGGCCAATGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATTTGGTTTTTAATCTTAGGAACTCCAAGTGGGCCAATGAGAT  100

seq1  GGCTCCATGTATAAAGGCAGTTATGCAAAGGTCTGGATGACATGAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATGTATAAAGGCAGTTATGCAAAGGTCTGGATGACATGAGTTCA  150

seq1  GTCTTCAGATTCTGCAAGATAACAGGAGAGGACCAACCCCTGCGAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGATTCTGCAAGATAACAGGAGAGGACCAACCCCTGCGAGTTGT  200

seq1  CCTCTGACCTCAGTACACATGTCATGGTACGTGTGTAGTATGCACATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCTCAGTACACATGTCATGGTACGTGTGTAGTATGCACATGCA  250

seq1  CAGAAGTCCCAGCACTCGGGAGGCAGAGGCAGGAGGATCTCTGAGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCCCAGCACTCGGGAGGCAGAGGCAGGAGGATCTCTGAGTTTTA  300

seq1  GGCCAGCCTGGTCTACAAAACGATTTACAGTTATATAAAGAAACTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAACGATTTACAGTTATATAAAGAAACTCTGTT  350

seq1  TTGAAAAACAAAACAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACAAAACAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTG  400

seq1  CCTAGCAAGCGCAAGGCCCTGGGTTCAGTCCTCAACTCTGGAAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAAGCGCAAGGCCCTGGGTTCAGTCCTCAACTCTGGAAGAGAGAG  450

seq1  AGAGAGAGGGAGAGGGAAAGGGAGAGGGAGAGG  483
      |||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGAGAGGGAAAGGGAGAGGGAGAGG  483

seq1: chr11_75384606_75385547
seq2: B6Ng01-183J11.g_68_1010 (reverse)

seq1  ACCCC-AGCTAGTGAAACCTACATCTTTCCCAAGAA-GCTCTACCCACC-  47
      ||||| |||||||| ||| ||||||| ||||||||| |||||| ||||| 
seq2  ACCCCAAGCTAGTGGAACTTACATCTATCCCAAGAAGGCTCTAACCACCT  50

seq1  TGCTCCTCCCTCTATTGCCCAGGGCTTGGCCCACAAATTGAACCGAGTTC  97
      |||| ||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TGCT-CTCCCTCTAATGCCCAGGGC-TGGCCCACAAATTGAACCGAGTTC  98

seq1  CATCATCCACCATCTGTGACTGTGAATATAGCCCCTCGTACCTCTCTGGC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCCACCATCTGTGACTGTGAATATAGCCCCTCGTACCTCTCTGGC  148

seq1  AGAGCCTGGTGTTCCCCGAGATTAAGGCCAGAGCTACTTCCCTCTTTAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGGTGTTCCCCGAGATTAAGGCCAGAGCTACTTCCCTCTTTAAG  198

seq1  CCTCATCCTACAGGGTCATTCCAGGTCTGCCTGTCCCCCTCGTTGTACCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCTACAGGGTCATTCCAGGTCTGCCTGTCCCCCTCGTTGTACCC  248

seq1  CCCTCCCGTTCCCCAAGCCTGGAGGAAGTTGTGGCTGCCCTGGCAGGGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCGTTCCCCAAGCCTGGAGGAAGTTGTGGCTGCCCTGGCAGGGTA  298

seq1  TGAGGGAGTCGGGCAGGAGCTGTGATGCTGAGTTTCCGTGATTGTGCAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGTCGGGCAGGAGCTGTGATGCTGAGTTTCCGTGATTGTGCAAC  348

seq1  GCTCCTGGAGGGGGGGGGGGGGGGGAGACAGCAGAGCCAGGGTCAGCCTC  397
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGAGGGGGGTGGGGGGGGGAGACAGCAGAGCCAGGGTCAGCCTC  398

seq1  CAACCCAAGCCACAGACTCTGCTGGCACCATGCTTTCCACCCTGCGCAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAAGCCACAGACTCTGCTGGCACCATGCTTTCCACCCTGCGCAGC  448

seq1  CCCACACCCACAGGCTAAGGGCACATCTGAGTAAAGGAGAGGCTTGCTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCCACAGGCTAAGGGCACATCTGAGTAAAGGAGAGGCTTGCTCC  498

seq1  AGAGTCTGGAGCCTGAGGGGCCTGAGGCTGATACCGCCTCTCCCTGCAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGGAGCCTGAGGGGCCTGAGGCTGATACCGCCTCTCCCTGCAGG  548

seq1  CACCAGTGGTGCAGCCCTGGTTACCAGTATACCTAAGCCAGGCCAGTGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGGTGCAGCCCTGGTTACCAGTATACCTAAGCCAGGCCAGTGAG  598

seq1  GGACTGGGGAAGCCTGTCACCCGTGCTGGCTGTGATGGGTCTCATTGCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGGAAGCCTGTCACCCGTGCTGGCTGTGATGGGTCTCATTGCCC  648

seq1  CAACAGGTACCCCTCCACACAGTTTGGTAGCCTCACTGGACTGCAGTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTACCCCTCCACACAGTTTGGTAGCCTCACTGGACTGCAGTCCC  698

seq1  TGGTCAGTGCGCTCTTTGCTCTCCTGCAGCAGCCGCTGTATCTGGCCATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTGCGCTCTTTGCTCTCCTGCAGCAGCCGCTGTATCTGGCCATG  748

seq1  ATGGGTCCTCTGGGAGGAGACCCTCTGTGGGTAAGAAGGGTCAGGGTGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCTCTGGGAGGAGACCCTCTGTGGGTAAGAAGGGTCAGGGTGTC  798

seq1  TCTCCATTCTGCTCCTGGGAAGGGGGCCCAAGGACAACAGGTAGTGTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTCTGCTCCTGGGAAGGGGGCCCAAGGACAACAGGTAGTGTGGG  848

seq1  AACGTTGGACAGTACCCAGTCAGGGGTCCCTGGTGGATGGTGACCGGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTGGACAGTACCCAGTCAGGGGTCCCTGGTGGATGGTGACCGGGAA  898

seq1  GGAGGAGAAAACTGGCCTCTCTGGATCCGATTCTGGGGTGAATTC  942
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAAAACTGGCCTCTCTGGATCCGATTCTGGGGTGAATTC  943