BAC Information

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BAC

Clone NameB6Ng01-183N24
Chromosome11 (Build37)
Map Location 101,419,819 - 101,562,851
singlet/doubletdoublet
Overlap geneNbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
Upstream geneTtc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1
Downstream geneDhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183N24.bB6Ng01-183N24.g
ACCGA009391GA009392
length412849
definitionB6Ng01-183N24.b B6Ng01-183N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,419,819 - 101,420,236)(101,562,009 - 101,562,851)
sequence
caggtcagccagagctgttgaacagagaaacagccatgtctcaaaaaaaa
aaaaaatgttcacatcttaataatgtgtcagatgtgtctctgtttacact
gtttggctagaggtaaggttgaatatgtttatatatttattaggcattcc
tatttcctcttctgtatattttgtgcacatttttacttgtattactctgt
aaggtttttgttcgtttttgtaagtctctctggctgttctgaaacttact
ctgtagtccaggctggcctcacacacacacacagacatccacctgcctca
gcctgctgcatgctggggataaaagcttaaggatgtgcacagctgcactg
gacactggattattcctcctgctatcggttttcatgagtgtgtgtgtgtg
tgtgtgtgtgtg
gaattcaggggccagccagatggctcagtgggtgaaggcacctgctgtcc
agctatacagtctcgacacgatccccgggacccacagtgtggaaggagag
aactgattcctgtaagctgtcctctaaccatggcacacacaccatgtctt
cccagaccccccccacacacagagagagatttaattctttaaaaaaagga
agacagtaaatgttagaatatgagagttatatattcacaaaataatttat
aaaaatacatacacaaaacaaattattgattactgtctgttaatgtacaa
ataaaagggtgagaagggttgggaatgtagttcatttgctaaagtaactg
cctggcatgcatataaactgggcatggtagcatgtggctgtaatctcagc
tctcaggagaaggaagcaggaggatcaggaattggaggccagcctggatg
acacagtaagactgggtctcaaaaacaaaccaaaacaaacatcaagtatt
gagtctggagggtggcaacaggttctcacctgtcatgtgtcactgaatgt
gcctcagacaccacgtgtttagtggaacccccacccccacccccaagagg
tcttgaaaaacctttgacgcctggcaaccatcctcagacatactattgta
gttagtctgtggtgcagtgtgggtaccacacgttcccagggttgattcaa
cacttcggcaaaatctgagccctccggacttgagcaaatggtcgatgaac
aactgttctgagagccaatatacgaagccagccagcttctgctctgacct
cacagctatcagggcagatcagttctttggcaaagttaaacaaagctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101419819_101420236
seq2: B6Ng01-183N24.b_47_464

seq1  GAATTCCAAGTCAGCCAGAGCTGTTGAACAGAGAAACAGCCATGTCTCAA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCAGAGCTGTTGAACAGAGAAACAGCCATGTCTCAA  50

seq1  AAAAAAAAAAAATGTTCACATCTTAATAATGTGTCAGATGTGTCTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATGTTCACATCTTAATAATGTGTCAGATGTGTCTCTGTT  100

seq1  TACACTGTTTGGCTAGAGGTAAGGTTGAATATGTTTATATATTTATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTTTGGCTAGAGGTAAGGTTGAATATGTTTATATATTTATTAGG  150

seq1  CATTCCTATTTCCTCTTCTGTATATTTTGTGCACATTTTTACTTGTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTATTTCCTCTTCTGTATATTTTGTGCACATTTTTACTTGTATTA  200

seq1  CTCTGTAAGGTTTTTGTTCGTTTTTGTAAGTCTCTCTGGCTGTTCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAGGTTTTTGTTCGTTTTTGTAAGTCTCTCTGGCTGTTCTGAAA  250

seq1  CTTACTCTGTAGTCCAGGCTGGCCTCACACACACACACAGACATCCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTGTAGTCCAGGCTGGCCTCACACACACACACAGACATCCACCT  300

seq1  GCCTCAGCCTGCTGCATGCTGGGGATAAAAGCTTAAGGATGTGCACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCTGCTGCATGCTGGGGATAAAAGCTTAAGGATGTGCACAGCT  350

seq1  GCACTGGACACTGGATTATTCCTCCTGCTATCGGTTTTCATGAGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGACACTGGATTATTCCTCCTGCTATCGGTTTTCATGAGTGTGTG  400

seq1  TGTGTGTGTGTGTGTGTG  418
      ||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTG  418

seq1: chr11_101562009_101562851
seq2: B6Ng01-183N24.g_69_917 (reverse)

seq1  GTAGCTTTGTTT-ACTTTGCC-AAGAACTGATCTGGCCTGATAGCTGTGA  48
      |||||||||||| |||||||| ||||||||||||| ||||||||||||||
seq2  GTAGCTTTGTTTAACTTTGCCAAAGAACTGATCTGCCCTGATAGCTGTGA  50

seq1  GGTCAGAGCAG-AGCTGGCTGGCTTCGTCTTTTGGCTCTCAGAACAGTTG  97
      ||||||||||| |||||||||||||||| | |||||||||||||||||||
seq2  GGTCAGAGCAGAAGCTGGCTGGCTTCGTATATTGGCTCTCAGAACAGTTG  100

seq1  TTCATCGACCATTTGCTC-AGTCCGGAGGGCTCAGATTTTGCCG-AGTGT  145
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  TTCATCGACCATTTGCTCAAGTCCGGAGGGCTCAGATTTTGCCGAAGTGT  150

seq1  TGAATCAA-CCTGGGAACGTGTGGTACCCACACTGCACCACAGACTAACT  194
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAACCCTGGGAACGTGTGGTACCCACACTGCACCACAGACTAACT  200

seq1  ACAATAGTATGTCTGAGGATGGTTGCCAGGCGTCAAAGGTTTTTCAAGAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTATGTCTGAGGATGGTTGCCAGGCGTCAAAGGTTTTTCAAGAC  250

seq1  CTCTTGGGGGTGGGGGTGGGGGTTCCACTAAACACGTGGTGTCTGAGGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGGGTGGGGGTGGGGGTTCCACTAAACACGTGGTGTCTGAGGCA  300

seq1  CATTCAGTGACACATGACAGGTGAGAACCTGTTGCCACCCTCCAGACTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTGACACATGACAGGTGAGAACCTGTTGCCACCCTCCAGACTCA  350

seq1  ATACTTGATGTTTGTTTTGGTTTGTTTTTGAGACCCAGTCTTACTGTGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGATGTTTGTTTTGGTTTGTTTTTGAGACCCAGTCTTACTGTGTC  400

seq1  ATCCAGGCTGGCCTCCAATTCCTGATCCTCCTGCTTCCTTCTCCTGAGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCTGGCCTCCAATTCCTGATCCTCCTGCTTCCTTCTCCTGAGAG  450

seq1  CTGAGATTACAGCCACATGCTACCATGCCCAGTTTATATGCATGCCAGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTACAGCCACATGCTACCATGCCCAGTTTATATGCATGCCAGGC  500

seq1  AGTTACTTTAGCAAATGAACTACATTCCCAACCCTTCTCACCCTTTTATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTAGCAAATGAACTACATTCCCAACCCTTCTCACCCTTTTATT  550

seq1  TGTACATTAACAGACAGTAATCAATAATTTGTTTTGTGTATGTATTTTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTAACAGACAGTAATCAATAATTTGTTTTGTGTATGTATTTTTA  600

seq1  TAAATTATTTTGTGAATATATAACTCTCATATTCTAACATTTACTGTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTTGTGAATATATAACTCTCATATTCTAACATTTACTGTCTT  650

seq1  CCTTTTTTTAAAGAATTAAATCTCTCTCTGTGTGTGGGGGGGGTCTGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTAAAGAATTAAATCTCTCTCTGTGTGTGGGGGGGGTCTGGGA  700

seq1  AGACATGGTGTGTGTGCCATGGTTAGAGGACAGCTTACAGGAATCAGTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGTGTGTGTGCCATGGTTAGAGGACAGCTTACAGGAATCAGTTC  750

seq1  TCTCCTTCCACACTGTGGGTCCCGGGGATCGTGTCGAGACTGTATAGCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCACACTGTGGGTCCCGGGGATCGTGTCGAGACTGTATAGCTG  800

seq1  GACAGCAGGTGCCTTCACCCACTGAGCCATCTGGCTGGCCCCTGAATTC  843
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGTGCCTTCACCCACTGAGCCATCTGGCTGGCCCCTGAATTC  849