BAC Information

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BAC

Clone NameB6Ng01-183P07
Chromosome11 (Build37)
Map Location 5,273,647 - 5,392,262
singlet/doubletdoublet
Overlap geneZnrf3, LOC100042016
Upstream geneHormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1
Downstream geneLOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183P07.bB6Ng01-183P07.g
ACCGA009453GA009454
length1,191239
definitionB6Ng01-183P07.b B6Ng01-183P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,391,089 - 5,392,262)(5,273,647 - 5,273,885)
sequence
gaattccaggtaggtgctgtttaacagacaaccgtggcctttcctgcatt
tgaaactccttcctgtttggtctttatgtcaatgccagctgtggggattt
ttctctttcaacctggcctctgacttttacttggttgataagaaaataaa
cattgcaatcgtcatctgtcaatagcaccgggagcagccttcaagccggg
gccaggaggagccttgcatccaagatgaggggcggctttgactttacaaa
tggcttcttctgggctggacagcctgggcgagttttcctggatttcaggg
gttttgtctcactctctcacctaaatgtttcttctcctcttgtgtcgtct
ttatcagatagtaaaatcccagtaggccatgagaagggaaaggtaggctg
aaagcagggttgggcattccaggtgctgggcagggggcagggggaggcct
gtatatgtatatgagttctcttcagacacaccagaagagggcatcacatc
ccattacagatggtcatgagccaccatgtggttgctgggaattgaactca
gggcctctggaagagcagtcagtactcttaaccactgagccatctctcta
gccccaaatgcacactttcaaatggtgaggttgttggtaatggttgtagt
actatcgaatcaaacccagggccttgtgtgcaataggtctaccactgaac
tacatccccagcccttggtttcttgtgataggtaggatctcaccctgtag
cccagactacagccttgaactagaggttctcaggcctcggcctctgtggt
gcacacaggtgtgtgtggactgccacacccagctaatgtttaccttcata
cctcgtggatttcagctaaaataagacgcaacatgacctttacaggggaa
gaggcagctatcaatgggcacagtcagggaatctatggcccgagtcacta
cactgctccacacggagcacagcagaggtcaccagaagagaggaacaacg
aaccaaggacttccttggggttggtgacattatctccgaagggctagaga
acaagtgaattttcagagcaatgaacttaccttgagatctgaaagggtcc
tatgccatgcacctcagggtggtgaactgcataggccacggcccaccata
actcatgttcttgaaggctcgggtcctcagatgggtgaaac
tgaggacagaagtaatgtggtctggcgtgtcttttaactggattgctata
gctgctgctgtacttggaaagaattggtatggggaagaccatagaaagtg
ggactgcataaggaaagctaggcaggaggcttgaggagaagcaatagcag
tgtggaatcaggtagtaaagtaaaggtgttggttgagaagtggttagtta
ggctctgagagtgaaagtagaatggtggggtggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5391089_5392262
seq2: B6Ng01-183P07.b_44_1234 (reverse)

seq1  GTTTCA-CCATCTGAGGACCAG-GCCTTCAAAGACATGAGCTATGCTGGG  48
      |||||| ||||||||||||| | ||||||||  ||||||| |||| ||||
seq2  GTTTCACCCATCTGAGGACCCGAGCCTTCAAGAACATGAGTTATGGTGGG  50

seq1  CCGT-GCCTATGCAGGTCACCACACTGAGGTGCATGGCAATAGAACC--T  95
      |||| |||||||||| ||||||| |||||||||||||| |||| |||  |
seq2  CCGTGGCCTATGCAGTTCACCACCCTGAGGTGCATGGC-ATAGGACCCTT  99

seq1  TCAGATCTCCAGTTA--GTCATTGCTCTGAAA--TCACT--GTCTCTAGC  139
      ||||||||| || ||   ||||||||||||||  |||||   ||||||||
seq2  TCAGATCTCAAGGTAAGTTCATTGCTCTGAAAATTCACTTGTTCTCTAGC  149

seq1  C--TCGG-GATAATGTCACCA--CCCCAGGAAGTCCTT-GTTCGTTGTTC  183
      |  |||| |||||||||||||  ||| ||||||||||| |||||||||||
seq2  CCTTCGGAGATAATGTCACCAACCCCAAGGAAGTCCTTGGTTCGTTGTTC  199

seq1  CTCTC-TCTGGTGACCTCTGCTGTGCTCCGTGTGGAGCAGTGTAGTGACT  232
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTGGTGACCTCTGCTGTGCTCCGTGTGGAGCAGTGTAGTGACT  249

seq1  CGGGCCATAGATTCCCTGACTGTGCCCATTGATAGCTGCCTCTTCCCCTG  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCATAGATTCCCTGACTGTGCCCATTGATAGCTGCCTCTTCCCCTG  299

seq1  T-AAGGTCATGTTTGCGTCTTATTTTAGCTGAAATCCACGAGGTATGAAG  331
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTCATG-TTGCGTCTTATTTTAGCTGAAATCCACGAGGTATGAAG  348

seq1  GTAAACATTAGCTGGGTGTGGCAGTCCACACACACCTGTGTGCACCACAG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATTAGCTGGGTGTGGCAGTCCACACACACCTGTGTGCACCACAG  398

seq1  AGGCCGAGGCCTGAGAACCTCTAGTTCAAGGCTGTAGTCTGGGCTACAGG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGAGGCCTGAGAACCTCTAGTTCAAGGCTGTAGTCTGGGCTACAGG  448

seq1  GTGAGATCCTACCTATCACAAGAAACCAAGGGCTGGGGATGTAGTTCAGT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCCTACCTATCACAAGAAACCAAGGGCTGGGGATGTAGTTCAGT  498

seq1  GGTAGACCTATTGCACACAAGGCCCTGGGTTTGATTCGATAGTACTACAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACCTATTGCACACAAGGCCCTGGGTTTGATTCGATAGTACTACAA  548

seq1  CCATTACCAACAACCTCACCATTTGAAAGTGTGCATTTGGGGCTAGAGAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCAACAACCTCACCATTTGAAAGTGTGCATTTGGGGCTAGAGAG  598

seq1  ATGGCTCAGTGGTTAAGAGTACTGACTGCTCTTCCAGAGGCCCTGAGTTC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGGTTAAGAGTACTGACTGCTCTTCCAGAGGCCCTGAGTTC  648

seq1  AATTCCCAGCAACCACATGGTGGCTCATGACCATCTGTAATGGGATGTGA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCAACCACATGGTGGCTCATGACCATCTGTAATGGGATGTGA  698

seq1  TGCCCTCTTCTGGTGTGTCTGAAGAGAACTCATATACATATACAGGCCTC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTCTGGTGTGTCTGAAGAGAACTCATATACATATACAGGCCTC  748

seq1  CCCCTGCCCCCTGCCCAGCACCTGGAATGCCCAACCCTGCTTTCAGCCTA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCCCCTGCCCAGCACCTGGAATGCCCAACCCTGCTTTCAGCCTA  798

seq1  CCTTTCCCTTCTCATGGCCTACTGGGATTTTACTATCTGATAAAGACGAC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTTCTCATGGCCTACTGGGATTTTACTATCTGATAAAGACGAC  848

seq1  ACAAGAGGAGAAGAAACATTTAGGTGAGAGAGTGAGACAAAACCCCTGAA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGAGAAGAAACATTTAGGTGAGAGAGTGAGACAAAACCCCTGAA  898

seq1  ATCCAGGAAAACTCGCCCAGGCTGTCCAGCCCAGAAGAAGCCATTTGTAA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGAAAACTCGCCCAGGCTGTCCAGCCCAGAAGAAGCCATTTGTAA  948

seq1  AGTCAAAGCCGCCCCTCATCTTGGATGCAAGGCTCCTCCTGGCCCCGGCT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGCCGCCCCTCATCTTGGATGCAAGGCTCCTCCTGGCCCCGGCT  998

seq1  TGAAGGCTGCTCCCGGTGCTATTGACAGATGACGATTGCAATGTTTATTT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGCTCCCGGTGCTATTGACAGATGACGATTGCAATGTTTATTT  1048

seq1  TCTTATCAACCAAGTAAAAGTCAGAGGCCAGGTTGAAAGAGAAAAATCCC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAACCAAGTAAAAGTCAGAGGCCAGGTTGAAAGAGAAAAATCCC  1098

seq1  CACAGCTGGCATTGACATAAAGACCAAACAGGAAGGAGTTTCAAATGCAG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGCATTGACATAAAGACCAAACAGGAAGGAGTTTCAAATGCAG  1148

seq1  GAAAGGCCACGGTTGTCTGTTAAACAGCACCTACCTGGAATTC  1174
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCACGGTTGTCTGTTAAACAGCACCTACCTGGAATTC  1191

seq1: chr11_5273647_5273885
seq2: B6Ng01-183P07.g_70_308

seq1  TGAGGACAGAAGTAATGTGGTCTGGCGTGTCTTTTAACTGGATTGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGAAGTAATGTGGTCTGGCGTGTCTTTTAACTGGATTGCTATA  50

seq1  GCTGCTGCTGTACTTGGAAAGAATTGGTATGGGGAAGACCATAGAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGTACTTGGAAAGAATTGGTATGGGGAAGACCATAGAAAGTG  100

seq1  GGACTGCATAAGGAAAGCTAGGCAGGAGGCTTGAGGAGAAGCAATAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCATAAGGAAAGCTAGGCAGGAGGCTTGAGGAGAAGCAATAGCAG  150

seq1  TGTGGAATCAGGTAGTAAAGTAAAGGTGTTGGTTGAGAAGTGGTTAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATCAGGTAGTAAAGTAAAGGTGTTGGTTGAGAAGTGGTTAGTTA  200

seq1  GGCTCTGAGAGTGAAAGTAGAATGGTGGGGTGGGGTGGG  239
      |||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGAGTGAAAGTAGAATGGTGGGGTGGGGTGGG  239