BAC Information

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BAC

Clone NameB6Ng01-185K13
Chromosome11 (Build37)
Map Location 38,642,008 - 38,775,533
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185K13.bB6Ng01-185K13.g
ACCGA010710GA010711
length1,0541,092
definitionB6Ng01-185K13.b B6Ng01-185K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,774,456 - 38,775,533)(38,642,008 - 38,643,113)
sequence
gaattcagtaataaacatgtgtgaacctggccttccttcttactccctct
tctaaatcaatctttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ctcctcctcctcctcctcctcctcttcctcctcctcttcttcctcttctt
cctcttcttcctcttcttcctcttcttcctcttcttcctcttctttttgt
ttttcgagacaaggtttctctgtgtagcccttgctgtcctggaactcact
ctgtagaccagtctggcctcaaactcagtaatctgtctgcctcttcaatc
tttcttcttaatcacaaggtgattcttactgttttgtttttttgtttttt
taatgagattagcttaatattgtttataacttcttggtttattcttagta
ggttatatatgactataagaatacattttcctaggttttccactttattg
gaatatatagtttcagagttttcactactgaacttcctactgttatttgt
atctattatagttgatccattttcttttgtttttcagtgtattctctaaa
ccatgctattttttttcttttttctttttatattagacattttctttatt
tacatttcatatgttatctcctttcctggtttcccctccaaaacccccct
aagccatccccacaccctttgtccatcaacccacccactcctgcttcctg
gccctggaaatcccctatagtgggcaatagagccttcacagaaccaaggg
cctctcctcccattgatgactgacaagatcatcctctgcaacatatgggt
ctggagccatgggtccctccatgtatactctttgttggtggtttagtccc
tgggagctctgggttactggttggtgatattgttgttcctcctatgggct
gcaagtcattttctatataatattatcatttgactctatctctctagaga
ttagtggaattagtgtggtcattggtctatctttcaggtatccctattta
tgac
gaattccataggggattgcttaaaacgctgcctgctctaaatggtactca
gtcttgccacagattacagtgctgcagaggtgtgataagaaaacttcaac
tgaaggcaggattggaggaccagtggtaaacatgctacatcctgcaaatg
aggcttcacagagggagggagacatcctcaactgtctgtggtgtgttctt
ggtctacaattgaagtttccttgtgttgctaaaccacaaactgatatacc
tacagtggctgatgatttatttgcacttctaccttttatatatctaaaca
tttacgcattcaataaaaaaagagacttacatttatcctcctaaacactg
ccttatttccattgcctatagtatatgagaaacatcattttatttttatt
tatttaacttatcattatataatatcacctattggaaaggatcaaaataa
aattaaacaacgaaacgaggcaggaagagatttttgaactaataaaagtt
ttttcagggtatttactaaaggtgactttagcagactcatgaagttcagc
catggcgtttatacatagggatgttacttttaaaatcagatcgatttgga
aatgaattattaaacaataagttattagattccaaactctagcattatgt
actataattatagaaagaggaaaaaagcggtgagttgcttcacagcttaa
atacattggcaacattggcagaaagtgagggattagaaagaaacaaaaca
aaacaaacaattaacgtaaacaatagtgtaaagtgcagcatcatgtaaat
gggaaagggatgtttttcctttgtgcttccacgtgactctcataggcaga
ggcacgggctgattcgccatgctgggaacattacttcatttacaagttca
aaccattaaattaatgaggagtgccttgtttacttctagccaagatccaa
aggccccaatgttcagaattcacaggactgctactttacagaataaacaa
acaaacagaaaaaaagtgacattaaaatctaattatttcccaggtataga
aatattaatataccttatagaagagcaaactctcaaatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38774456_38775533
seq2: B6Ng01-185K13.b_45_1098 (reverse)

seq1  GTCATAAATAGGGATACTTGAAAAGATAAACAAAATTGACCAACACTTAT  50
      ||||||||||||||||| || ||||||| || ||  ||||| ||||| ||
seq2  GTCATAAATAGGGATACCTG-AAAGATAGACCAA--TGACC-ACACTAAT  46

seq1  TCCAACTAATCTCTGGAAAGAGATAGAAGTCAAAATGATAAATATTTATA  100
      ||| ||||||||||  | |||||||| |||| ||||||| |||| |||||
seq2  TCC-ACTAATCTCT--AGAGAGATAG-AGTC-AAATGAT-AATA-TTATA  89

seq1  TAAGAAAATGGACCTTGCAGCCCCATAGGAGGAACAACAATATCAACCAA  150
      | ||||||||   ||||||| ||||||||||||||||||||||| |||||
seq2  T-AGAAAATG--ACTTGCAG-CCCATAGGAGGAACAACAATATC-ACCAA  134

seq1  CCAGTAACCCCAGAGCTCCCAGGGACTAAACCACCAACAAAAGAGTATAC  200
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  CCAGTAA-CCCAGAGCTCCCAGGGACTAAACCACCAAC-AAAGAGTATAC  182

seq1  ATGGAGGGACCCATGGCTCCAGACCCATATGTTGCAGAGGATGATCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGACCCATGGCTCCAGACCCATATGTTGCAGAGGATGATCTTGT  232

seq1  CAGTCATCAATGGGAGGAGAGGCCCTTGGTTCTGTGAAGGCTCTATTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCAATGGGAGGAGAGGCCCTTGGTTCTGTGAAGGCTCTATTGCC  282

seq1  CACTATAGGGGATTTCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGGGGATTTCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTGATGG  332

seq1  ACAAAGGGTGTGGGGATGGCTTAGGGGGGTTTTGGAGGGGAAACCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGTGTGGGGATGGCTTAGGGGGGTTTTGGAGGGGAAACCAGGAA  382

seq1  AGGAGATAACATATGAAATGTAAATAAAGAAAATGTCTAATATAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAACATATGAAATGTAAATAAAGAAAATGTCTAATATAAAAAGA  432

seq1  AAAAAGAAAAAAAATAGCATGGTTTAGAGAATACACTGAAAAACAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAATAGCATGGTTTAGAGAATACACTGAAAAACAAAAGA  482

seq1  AAATGGATCAACTATAATAGATACAAATAACAGTAGGAAGTTCAGTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATCAACTATAATAGATACAAATAACAGTAGGAAGTTCAGTAGTG  532

seq1  AAAACTCTGAAACTATATATTCCAATAAAGTGGAAAACCTAGGAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGAAACTATATATTCCAATAAAGTGGAAAACCTAGGAAAATGT  582

seq1  ATTCTTATAGTCATATATAACCTACTAAGAATAAACCAAGAAGTTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATAGTCATATATAACCTACTAAGAATAAACCAAGAAGTTATAAA  632

seq1  CAATATTAAGCTAATCTCATTAAAAAAACAAAAAAACAAAACAGTAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTAAGCTAATCTCATTAAAAAAACAAAAAAACAAAACAGTAAGAA  682

seq1  TCACCTTGTGATTAAGAAGAAAGATTGAAGAGGCAGACAGATTACTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGTGATTAAGAAGAAAGATTGAAGAGGCAGACAGATTACTGAGT  732

seq1  TTGAGGCCAGACTGGTCTACAGAGTGAGTTCCAGGACAGCAAGGGCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGACTGGTCTACAGAGTGAGTTCCAGGACAGCAAGGGCTACA  782

seq1  CAGAGAAACCTTGTCTCGAAAAACAAAAAGAAGAGGAAGAAGAGGAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCTTGTCTCGAAAAACAAAAAGAAGAGGAAGAAGAGGAAGAA  832

seq1  GAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAGGAGGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAGGAGGAAGA  882

seq1  GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAG  950
      ||||||||||||||||||||||      ||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAGGAG------GAAGAAGAAGAAGAAGAAGAAG  926

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  976

seq1  GAAGAAGAAGAAGAAAGATTGATTTAGAAGAGGGAGTAAGAAGGAAGGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAAGATTGATTTAGAAGAGGGAGTAAGAAGGAAGGCC  1026

seq1  AGGTTCACACATGTTTATTACTGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  AGGTTCACACATGTTTATTACTGAATTC  1054

seq1: chr11_38642008_38643113
seq2: B6Ng01-185K13.g_71_1162

seq1  GAATTCCATAGGGGATTGCTTAAAACGCTGCCTGCTCTAAATGGTACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGGGGATTGCTTAAAACGCTGCCTGCTCTAAATGGTACTCA  50

seq1  GTCTTGCCACAGATTACAGTGCTGCAGAGGTGTGATAAGAAAACTTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCACAGATTACAGTGCTGCAGAGGTGTGATAAGAAAACTTCAAC  100

seq1  TGAAGGCAGGATTGGAGGACCAGTGGTAAACATGCTACATCCTGCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGGATTGGAGGACCAGTGGTAAACATGCTACATCCTGCAAATG  150

seq1  AGGCTTCACAGAGGGAGGGAGACATCCTCAACTGTCTGTGGTGTGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCACAGAGGGAGGGAGACATCCTCAACTGTCTGTGGTGTGTTCTT  200

seq1  GGTCTACAATTGAAGTTTCCTTGTGTTGCTAAACCACAAACTGATATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAATTGAAGTTTCCTTGTGTTGCTAAACCACAAACTGATATACC  250

seq1  TACAGTGGCTGATGATTTATTTGCACTTCTACCTTTTATATATCTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGCTGATGATTTATTTGCACTTCTACCTTTTATATATCTAAACA  300

seq1  TTTACGCATTCAATAAAAAAAGAGACTTACATTTATCCTCCTAAACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGCATTCAATAAAAAAAGAGACTTACATTTATCCTCCTAAACACTG  350

seq1  CCTTATTTCCATTGCCTATAGTATATGAGAAACATCATTTTATTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTCCATTGCCTATAGTATATGAGAAACATCATTTTATTTTTATT  400

seq1  TATTTAACTTATCATTATATAATATCACCTATTGGAAAGGATCAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACTTATCATTATATAATATCACCTATTGGAAAGGATCAAAATAA  450

seq1  AATTAAACAACGAAACGAGGCAGGAAGAGATTTTTGAACTAATAAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAACGAAACGAGGCAGGAAGAGATTTTTGAACTAATAAAAGTT  500

seq1  TTTTCAGGGTATTTACTAAAGGTGACTTTAGCAGACTCATGAAGTTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGGTATTTACTAAAGGTGACTTTAGCAGACTCATGAAGTTCAGC  550

seq1  CATGGCGTTTATACATAGGGATGTTACTTTTAAAATCAGATCGATTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTTTATACATAGGGATGTTACTTTTAAAATCAGATCGATTTGGA  600

seq1  AATGAATTATTAAACAATAAGTTATTAGATTCCAAACTCTAGCATTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTATTAAACAATAAGTTATTAGATTCCAAACTCTAGCATTATGT  650

seq1  ACTATAATTATAGAAAGAGGAAAAAAGCGGTGAGTTGCTTCACAGCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTATAGAAAGAGGAAAAAAGCGGTGAGTTGCTTCACAGCTTAA  700

seq1  ATACATTGGCAACATTGGCAGAAAGTGAGGGATTAGAAAGAAACAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGGCAACATTGGCAGAAAGTGAGGGATTAGAAAGAAACAAAACA  750

seq1  AAACAAACAATTAACGTAAACAATAGTGTAAAGTGCAGCATCATGTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAATTAACGTAAACAATAGTGTAAAGTGCAGCATCATGTAAAT  800

seq1  GGGAAAGGGATGTTTTTCCTTTGTGCTTCCACGTGACTCTCATAGGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGGATGTTTTTCCTTTGTGCTTCCACGTGACTCTCATAGGCAGA  850

seq1  GGCACGGGCTGATTCGCCATGCT-GGAACATTACTTCATTTACAAGTTCA  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCACGGGCTGATTCGCCATGCTGGGAACATTACTTCATTTACAAGTTCA  900

seq1  AACCATTAAAATTAATGAGGAGTGCC-TGTTTACTTCTAGCCAAGATCCA  948
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  AACCATT-AAATTAATGAGGAGTGCCTTGTTTACTTCTAGCCAAGATCCA  949

seq1  AAGGGCCCCAAATGTTCAGAATTCACAAGGAACTGCTACTTTTACAGAAT  998
      ||||  ||| |||||||||||||||||  | |||||||| ||||||||||
seq2  AAGG--CCCCAATGTTCAGAATTCACA--GGACTGCTAC-TTTACAGAAT  994

seq1  AAACAAAACAAAACAGAAAAAAAAAGTGACATTAAAATCTTATTATTTCC  1048
      |||||||   ||||||  |||||||||||||||||||||| |||||||||
seq2  AAACAAA--CAAACAG--AAAAAAAGTGACATTAAAATCTAATTATTTCC  1040

seq1  CA-GTATAGAAATATTAATAATACCCTTATAGGAGGAGCAAAACTCTCAA  1097
      || |||||||||||||||| ||| ||||||| || |||| ||||||||||
seq2  CAGGTATAGAAATATTAAT-ATA-CCTTATA-GAAGAGC-AAACTCTCAA  1086

seq1  AATTTCAAA  1106
      |   |||||
seq2  A---TCAAA  1092