BAC Information

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BAC

Clone NameB6Ng01-186K01
Chromosome11 (Build37)
Map Location 6,199,957 - 6,381,087
singlet/doubletdoublet
Overlap geneOgdh, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb
Upstream geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, LOC100042227
Downstream geneMyo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186K01.bB6Ng01-186K01.g
ACCGA011417GA011418
length1,1901,152
definitionB6Ng01-186K01.b B6Ng01-186K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,379,921 - 6,381,087)(6,199,957 - 6,201,095)
sequence
gaattcattttccacctcacagaaaacaagtataaatagtggcacaacta
ctgcacagagggtgaggcagtaactatggactgtgaatacggttcacaaa
cttgccttcagtcacaggaatccaagatcgccatggagccctgaacagta
catttggcccacaattgtgaagctagcagtgtctgcagcacgggaggcct
ggcctgggacgtgggctgccctgccctcctggcagtacatgcacaggtta
ctttggaagccttcactgctttcccctgatctgcttttatcgaaaatggg
aaagggcaaaaaaagaccagggaattgcagcttacaagcagctcagagca
cagggccttggagttaaacatgattccactttagatacagtcacaaacca
ttttgtggggccccacatcctcctgccagcccctgccctgacgacactga
cctgtaaccatctcttccccctccttctagctttagggcacaggctggct
ggcacatgggcaaccttgaatgcactgtgggaagttggaagggtcagggc
agcaaatggttccagagtgtggccaaaagcgcctttaaacccagagtaga
gtgatctatctacaggataaccagctttcagacttcaaagtgctgctgat
gtgaataacagagcccagagccggccagccacagagtaaggagagcagac
tccgtgacctgaatccggtagggttctgcatgctgcagagggtgcagtct
ggacacttggcacagtcttcttgggtctgcagatgggctaacggcaggcg
tggctgagctaatttcttgggtttgatcacggtgctccagttagctaaaa
ttgtccttattctggtaaacagacacagaaatgttgcagtgaatgggaat
actagcttacctccaaacagctcagaaaggaaatctaacacaaagaaaga
cagaggcaagggaaaaatacagacatgggagaaatgggaaagggaacagg
catagaaagatggaggagcaagatagtcgatggaagagaaagaccagaca
tggttacttactatttcctttcccgtggatttgtgtgaaggcttactact
tctttacagctagtgtggcttacatggtgggtgctatatatgggtgtgtg
catgaagtggaccgtgggggtgctattcatgcctgcgaca
gaattcactgtatagaccaggctgacctcaaactgggagatccatgtacc
tttgtctctcaagctctgggattacagacatgaggcagcatgcttggcca
tctctatttaaaacagtagccacagaaacaacttttaagatggttggggg
tgtctaatttattagttctgtgtttgcccctcatatattcatccctgatt
tagtgcccagcattccacagaaaaatgatcgtatgtgtgattgtgaaaat
tatgtctggccaaagtatcacagtgggtcagaactctctgtcccttcttc
ctgtgctgctccacggaattctgtcttctaatttaatctacctctgtact
gggtctactgtctttttgttctgagtttggtcctctctgagactatctgt
tctaggctatcataggcatttaaggaattttgctagtggcctgtattagc
atttatagctccctttaatgtcttaacatgttggggacacatagaacaat
gacatctgtgtttatgttttaaaaacagaactagccaagcatgatgacac
atttgtgatctcagtagtcttaaaacaagcaggtagttgaggactgctaa
gcccctggtcttgttttactcaggagagacaggatccaagctccagtatt
gtatccaggtctttctgatgcagatctggtccttttccttagtgccccag
cgcttgtcttgaagatgctagtgactggtcctgctttacccttcctgcct
gtcctgccatggagctttcccacagctcacgactgcagcattctacccct
tatacctccccagttcacagtctcccttctttctaatttcattcattgat
acctctccctcctcccttccttccttccttgttttgttgtgttttttgag
acagggtttctctgtgtagccctgattgtcctggaactcattctgtagac
caggctggccctcgactcagaaatccgcctgccctctgcctcctggagta
ctggggactaaaggtgtaccaccaccgatttcaattctctatgtggtcta
gcttgtccaccttcttaaggtccataagaagcataggtttcaggtgtctg
ctgtcagagtgaaggggactctgcaattccgaaactagatggaaggccat
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6379921_6381087
seq2: B6Ng01-186K01.b_31_1220 (reverse)

seq1  TGTCTGCAGGCATGGATAACACACCCAC-GTCCAC-TCATGCACACAC--  46
      |||| ||||||||| ||| ||| ||||| |||||| ||||||||||||  
seq2  TGTC-GCAGGCATGAATAGCACCCCCACGGTCCACTTCATGCACACACCC  49

seq1  --ATATAGCA--CACATTGTA--GCACACTAGCTGTAA--GAGTAGT-AG  87
        ||||||||  |||  ||||   ||||||||||||||   |||||| ||
seq2  ATATATAGCACCCACCATGTAAGCCACACTAGCTGTAAAGAAGTAGTAAG  99

seq1  CCTTCACACAAATCCACCGGAA--GGAATAGTAAGTAA-CATGTCTGGTC  134
      ||||||||||||||||| ||||  | |||||||||||| |||||||||||
seq2  CCTTCACACAAATCCACGGGAAAGGAAATAGTAAGTAACCATGTCTGGTC  149

seq1  TTTCTCT--CATCG-CTATCTTGCT-CTCCATCTTTCTATGCCTGTTCC-  179
      |||||||  ||||| |||||||||| ||||||||||||||||||||||| 
seq2  TTTCTCTTCCATCGACTATCTTGCTCCTCCATCTTTCTATGCCTGTTCCC  199

seq1  -TTTCCATTTCT-CCATGTCTGTATTTTT-CCTTGCCTCTGTCTTTCTTT  226
       || |||||||| |||||||||||||||| ||||||||||||||||||||
seq2  TTTCCCATTTCTCCCATGTCTGTATTTTTCCCTTGCCTCTGTCTTTCTTT  249

seq1  GTGTTTAGATTTCC-TTCTGAGCTGTTTGGAGGTAAGCTAGTATTCCCAT  275
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTG-TTAGATTTCCTTTCTGAGCTGTTTGGAGGTAAGCTAGTATTCCCAT  298

seq1  TCACTGCAACATTTCTGTGTCTGTTTACCAGAATAAGGACAATTTTAGCT  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAACATTTCTGTGTCTGTTTACCAGAATAAGGACAATTTTAGCT  348

seq1  AACTGGAGCACCGTGATCAAACCCAAGAAATTAGCTCAGCCACGCCTGCC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGCACCGTGATCAAACCCAAGAAATTAGCTCAGCCACGCCTGCC  398

seq1  GTTAGCCCATCTGCAGACCCAAGAAGACTGTGCCAAGTGTCCAGACTGCA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCCATCTGCAGACCCAAGAAGACTGTGCCAAGTGTCCAGACTGCA  448

seq1  CCCTCTGCAGCATGCAGAACCCTACCGGATTCAGGTCACGGAGTCTGCTC  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCAGCATGCAGAACCCTACCGGATTCAGGTCACGGAGTCTGCTC  498

seq1  TCCTTACTCTGTGGCTGGCCGGCTCTGGGCTCTGTTATTCACATCAGCAG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCTGTGGCTGGCCGGCTCTGGGCTCTGTTATTCACATCAGCAG  548

seq1  CACTTTGAAGTCTGAAAGCTGGTTATCCTGTAGATAGATCACTCTACTCT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGAAGTCTGAAAGCTGGTTATCCTGTAGATAGATCACTCTACTCT  598

seq1  GGGTTTAAAGGCGCTTTTGGCCACACTCTGGAACCATTTGCTGCCCTGAC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAAGGCGCTTTTGGCCACACTCTGGAACCATTTGCTGCCCTGAC  648

seq1  CCTTCCAACTTCCCACAGTGCATTCAAGGTTGCCCATGTGCCAGCCAGCC  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAACTTCCCACAGTGCATTCAAGGTTGCCCATGTGCCAGCCAGCC  698

seq1  TGTGCCCTAAAGCTAGAAGGAGGGGGAAGAGATGGTTACAGGTCAGTGTC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTAAAGCTAGAAGGAGGGGGAAGAGATGGTTACAGGTCAGTGTC  748

seq1  GTCAGGGCAGGGGCTGGCAGGAGGATGTGGGGCCCCACAAAATGGTTTGT  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCAGGGGCTGGCAGGAGGATGTGGGGCCCCACAAAATGGTTTGT  798

seq1  GACTGTATCTAAAGTGGAATCATGTTTAACTCCAAGGCCCTGTGCTCTGA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATCTAAAGTGGAATCATGTTTAACTCCAAGGCCCTGTGCTCTGA  848

seq1  GCTGCTTGTAAGCTGCAATTCCCTGGTCTTTTTTTGCCCTTTCCCATTTT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGTAAGCTGCAATTCCCTGGTCTTTTTTTGCCCTTTCCCATTTT  898

seq1  CGATAAAAGCAGATCAGGGGAAAGCAGTGAAGGCTTCCAAAGTAACCTGT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAAAGCAGATCAGGGGAAAGCAGTGAAGGCTTCCAAAGTAACCTGT  948

seq1  GCATGTACTGCCAGGAGGGCAGGGCAGCCCACGTCCCAGGCCAGGCCTCC  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACTGCCAGGAGGGCAGGGCAGCCCACGTCCCAGGCCAGGCCTCC  998

seq1  CGTGCTGCAGACACTGCTAGCTTCACAATTGTGGGCCAAATGTACTGTTC  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGCAGACACTGCTAGCTTCACAATTGTGGGCCAAATGTACTGTTC  1048

seq1  AGGGCTCCATGGCGATCTTGGATTCCTGTGACTGAAGGCAAGTTTGTGAA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCATGGCGATCTTGGATTCCTGTGACTGAAGGCAAGTTTGTGAA  1098

seq1  CCGTATTCACAGTCCATAGTTACTGCCTCACCCTCTGTGCAGTAGTTGTG  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATTCACAGTCCATAGTTACTGCCTCACCCTCTGTGCAGTAGTTGTG  1148

seq1  CCACTATTTATACTTGTTTTCTGTGAGGTGGAAAATGAATTC  1167
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATTTATACTTGTTTTCTGTGAGGTGGAAAATGAATTC  1190

seq1: chr11_6199957_6201095
seq2: B6Ng01-186K01.g_63_1214

seq1  GAATTCACTGTATAGACCAGGCTGACCTCAAACTGGGAGATCCATGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATAGACCAGGCTGACCTCAAACTGGGAGATCCATGTACC  50

seq1  TTTGTCTCTCAAGCTCTGGGATTACAGACATGAGGCAGCATGCTTGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTCAAGCTCTGGGATTACAGACATGAGGCAGCATGCTTGGCCA  100

seq1  TCTCTATTTAAAACAGTAGCCACAGAAACAACTTTTAAGATGGTTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTAAAACAGTAGCCACAGAAACAACTTTTAAGATGGTTGGGGG  150

seq1  TGTCTAATTTATTAGTTCTGTGTTTGCCCCTCATATATTCATCCCTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTTATTAGTTCTGTGTTTGCCCCTCATATATTCATCCCTGATT  200

seq1  TAGTGCCCAGCATTCCACAGAAAAATGATCGTATGTGTGATTGTGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCCAGCATTCCACAGAAAAATGATCGTATGTGTGATTGTGAAAAT  250

seq1  TATGTCTGGCCAAAGTATCACAGTGGGTCAGAACTCTCTGTCCCTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGGCCAAAGTATCACAGTGGGTCAGAACTCTCTGTCCCTTCTTC  300

seq1  CTGTGCTGCTCCACGGAATTCTGTCTTCTAATTTAATCTACCTCTGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCTCCACGGAATTCTGTCTTCTAATTTAATCTACCTCTGTACT  350

seq1  GGGTCTACTGTCTTTTTGTTCTGAGTTTGGTCCTCTCTGAGACTATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTACTGTCTTTTTGTTCTGAGTTTGGTCCTCTCTGAGACTATCTGT  400

seq1  TCTAGGCTATCATAGGCATTTAAGGAATTTTGCTAGTGGCCTGTATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTATCATAGGCATTTAAGGAATTTTGCTAGTGGCCTGTATTAGC  450

seq1  ATTTATAGCTCCCTTTAATGTCTTAACATGTTGGGGACACATAGAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGCTCCCTTTAATGTCTTAACATGTTGGGGACACATAGAACAAT  500

seq1  GACATCTGTGTTTATGTTTTAAAAACAGAACTAGCCAAGCATGATGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGTGTTTATGTTTTAAAAACAGAACTAGCCAAGCATGATGACAC  550

seq1  ATTTGTGATCTCAGTAGTCTTAAAACAAGCAGGTAGTTGAGGACTGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGATCTCAGTAGTCTTAAAACAAGCAGGTAGTTGAGGACTGCTAA  600

seq1  GCCCCTGGTCTTGTTTTACTCAGGAGAGACAGGATCCAAGCTCCAGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGTCTTGTTTTACTCAGGAGAGACAGGATCCAAGCTCCAGTATT  650

seq1  GTATCCAGGTCTTTCTGATGCAGATCTGGTCCTTTTCCTTAGTGCCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGGTCTTTCTGATGCAGATCTGGTCCTTTTCCTTAGTGCCCCAG  700

seq1  CGCTTGTCTTGAAGATGCTAGTGACTGGTCCTGCTTTACCCTTCCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGTCTTGAAGATGCTAGTGACTGGTCCTGCTTTACCCTTCCTGCCT  750

seq1  GTCCTGCCATGGAGCTTTCCCACAGCTCACGACTGCAGCATTCTACCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCCATGGAGCTTTCCCACAGCTCACGACTGCAGCATTCTACCCCT  800

seq1  TATACCTCCCCAGTTCACAGTCTCCCTTCTTTCTAATTTCATTCATTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTCCCCAGTTCACAGTCTCCCTTCTTTCTAATTTCATTCATTGAT  850

seq1  ACCTCTCCCTCCCTCCCTTCCTTCCTTCCTTGTTTTGTTGTTGTTTTTTG  900
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  ACCTCTCCCT-CCTCCCTTCCTTCCTTCCTTGTTTTGTTG-TGTTTTTTG  898

seq1  AGACAGGGTTTCTCTGTGTAGCCCTGATTGTCCTGGAACTCATTCTGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTGTAGCCCTGATTGTCCTGGAACTCATTCTGTAG  948

seq1  ACCAGGCTGG-CCTCGAACTCAGAAATCCGCCTG-CCTCTGCCT-CTGGA  997
      |||||||||| ||||| ||||||||||||||||| ||||||||| |||||
seq2  ACCAGGCTGGCCCTCG-ACTCAGAAATCCGCCTGCCCTCTGCCTCCTGGA  997

seq1  GTACT-GGGACTAAAGGTGTA-CACCA-CGA-TTCAATTCTCTATGT-GT  1042
      ||||| ||||||||||||||| ||||| ||| ||||||||||||||| ||
seq2  GTACTGGGGACTAAAGGTGTACCACCACCGATTTCAATTCTCTATGTGGT  1047

seq1  CTAGCTTGTCCAC--TCCTAAAGTCCATAAGAACCATAG--TTCAGGTGT  1088
      |||||||||||||  || ||| ||||||||||| |||||  |||||||||
seq2  CTAGCTTGTCCACCTTCTTAAGGTCCATAAGAAGCATAGGTTTCAGGTGT  1097

seq1  CTGCTGCAGGAGTGA--GGGACTCTGC-ATTCAGAAACTAG-TGGAGAGC  1134
      ||||||   ||||||  |||||||||| |||| |||||||| ||||  ||
seq2  CTGCTGTCAGAGTGAAGGGGACTCTGCAATTCCGAAACTAGATGGAAGGC  1147

seq1  CATCA  1139
      |||||
seq2  CATCA  1152