BAC Information

Click to search

BAC

Clone NameB6Ng01-187G21
Chromosome11 (Build37)
Map Location 69,653,215 - 69,825,389
singlet/doubletdoublet
Overlap genePlscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl
Upstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik
Downstream geneDlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187G21.bB6Ng01-187G21.g
ACCGA012013GA012014
length9761,052
definitionB6Ng01-187G21.b B6Ng01-187G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,653,215 - 69,654,189)(69,824,341 - 69,825,389)
sequence
gaattccaatctttacaaggtgttgtaattgtgtgtagggctcataaaga
gcgcttgaactaatggagcctcttacctaaagagcacatgaggggctgga
gagatggctcagtggttaagagcgccgactgctgatcctgagttcaaatc
ccagcaactacatggtggctcacaaccatccgttatgagatctgacgctc
tcttctggtgcatctgaagtcagctacagtgtacttagcttttataataa
taaacaaatctttttttaaaaaacacatgggaatgtagattttagtaatt
tcattcatgtagttcattggagttcccctccaaactcccccatattgagg
gttgaccccagagccttgggaatggtgggcagtttttcttctgttgagtt
gtatgtccaggtgcttccttccttagcctcctggttgctgagattacagg
tgtgtacacccacctttgttagaatttcgttacgtgaggatggtgaggtt
tagccctgttattccagggatgttcttttccacagtgtccacctggtgaa
acaaatgttttccatgcccacacagttgagaagtgagagccatggcaata
ccgaacaggcatgcagttagtgtaaactgtgttgggattcaaaacccaga
tgtattggacatcgaaaaatgttttgcagtgcttgagatgatccttaaag
gagccctagtgtgtggaggacatttcagtgaacggagagtgaggaagacc
tggggagggttggatcttccttgctaagtttgaactaagatggaaaaaga
gacacaattgcaaagcatacttgacttaattcttcataaatggcgagaac
tgacagacttttaagggacatttattagccagtgttgattggtgtggcaa
acaccaaggagggccaactgggcaatactactgctgtctttctctcctgg
aaccaccttccttgcctgggtttaaa
gaattcaagggttggaggagtagatcagcactggtcttgaaggtctgagc
attagccattctgtctgatgcagcccttccctgttgtcttccccatgtcc
cgaccatgctcccttagtccatggcttacatgctgagtgccaacatggac
cagggattcaaagacttccagatagaagccgccatcagcaaaatcttttg
ctcggtgaggacccaggtgtgatgggagggcggagtccagattaggacct
cagctcaaaaatccaactcatctggttctctgtcctcaggaggcggcctg
gaaagtggcagatgagtgcatccaaataatggggggcatgggcttcatga
aggtacagagtattcctcggcaggggggggcatctgttcagagtggacag
gcacatctcaacagaggtttctgtgtcttcctgcgtgccaggaaccaggg
gtggagcgtgtgctccgagatattcgaatcttccggatctttgaaggggc
aaatgacattcttcgactgtttgtggctctgcaaggctgtatggtaagag
gaaggaggatgagagagagcagctggggaggacactgagtcctcactgtc
gccgtcccccttctctccacaggacaaaggaaaggaactcactgggctgg
gcaatgccctgaagaatccttttggaaacgttggcctcctgatgggagaa
gcaggcaaacagctgagacggtacctcatgggccggggccagggtcagag
tcagggtcaaacaagatgggaggccgcaactgaccagtcactcttccatc
tcctctcaggaggacaggaatcggcagtggtttgagtctgtcaggattgt
ccaccccagagttaagtcgcagtggtgaactggtgagtgagccttaaagc
agagccctgcggtggctgtgcgctgccttcctctcctgagctctgtctgt
gactctgtctcttcaggcagtgcaggctcttggatcaattgccaccgtgg
tgagggccaagcctggtgaaccacatgaaagggattggtcagtggagtga
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69653215_69654189
seq2: B6Ng01-187G21.b_46_1021

seq1  GAATTCCAATCTTTACAAGGTGTTGTAATTGTGTGTAGGGCTCATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTTTACAAGGTGTTGTAATTGTGTGTAGGGCTCATAAAGA  50

seq1  GCGCTTGAACTAATGGAGCCTCTTACCTAAAGAGCACATGAGGGGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTGAACTAATGGAGCCTCTTACCTAAAGAGCACATGAGGGGCTGGA  100

seq1  GAGATGGCTCAGTGGTTAAGAGCGCCGACTGCTGATCCTGAGTTCAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTGGTTAAGAGCGCCGACTGCTGATCCTGAGTTCAAATC  150

seq1  CCAGCAACTACATGGTGGCTCACAACCATCCGTTATGAGATCTGACGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACTACATGGTGGCTCACAACCATCCGTTATGAGATCTGACGCTC  200

seq1  TCTTCTGGTGCATCTGAAGTCAGCTACAGTGTACTTAGCTTTTATAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTGCATCTGAAGTCAGCTACAGTGTACTTAGCTTTTATAATAA  250

seq1  TAAACAAATCTTTTTTTAAAAAACACATGGGAATGTAGATTTTAGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATCTTTTTTTAAAAAACACATGGGAATGTAGATTTTAGTAATT  300

seq1  TCATTCATGTAGTTCATTGGAGTTCCCCTCCAAACTCCCCCATATTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATGTAGTTCATTGGAGTTCCCCTCCAAACTCCCCCATATTGAGG  350

seq1  GTTGACCCCAGAGCCTTGGGAATGGTGGGCAGTTTTTCTTCTGTTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCCCAGAGCCTTGGGAATGGTGGGCAGTTTTTCTTCTGTTGAGTT  400

seq1  GTATGTCCAGGTGCTTCCTTCCTTAGCCTCCTGGTTGCTGAGATTACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCCAGGTGCTTCCTTCCTTAGCCTCCTGGTTGCTGAGATTACAGG  450

seq1  TGTGTACACCCACCTTTGTTAGAATTTCGTTACGTGAGGATGGTGAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACCCACCTTTGTTAGAATTTCGTTACGTGAGGATGGTGAGGTT  500

seq1  TAGCCCTGTTATTCCAGGGATGTTCTTTTCCACAGTGTCCACCTGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGTTATTCCAGGGATGTTCTTTTCCACAGTGTCCACCTGGTGAA  550

seq1  ACAAATGTTTTCCATGCCCACACAGTTGAGAAGTGAGAGCCATGGCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTTTCCATGCCCACACAGTTGAGAAGTGAGAGCCATGGCAATA  600

seq1  CCGAACAGGCATGCAGTTAGTGTAAACTGTGTTGGGATTCAAAACCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACAGGCATGCAGTTAGTGTAAACTGTGTTGGGATTCAAAACCCAGA  650

seq1  TGTATTGGACATCGAAAAATGTTTTGCAGTGCTTGAGATGATCCTTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGGACATCGAAAAATGTTTTGCAGTGCTTGAGATGATCCTTAAAG  700

seq1  GAGCCCTAGTGTGTGGAGGACATTTCAGTGAACGGAGAGTGAGGAAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGTGTGTGGAGGACATTTCAGTGAACGGAGAGTGAGGAAGACC  750

seq1  TGGGGAGGGTTGGATCTTCCTTGCTAAGTTTGAACTAAGATGGAAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGTTGGATCTTCCTTGCTAAGTTTGAACTAAGATGGAAAAAGA  800

seq1  GACACAATTGCAAAGCATACTTGAC-TAATTC-TCATAGAATGGCGAGAA  848
      ||||||||||||||||||||||||| |||||| ||||| |||||||||||
seq2  GACACAATTGCAAAGCATACTTGACTTAATTCTTCATA-AATGGCGAGAA  849

seq1  CTGACAGACATTTAAGGGACATTTAATAAGCCAGTGTTGA-TGGGGTGGC  897
      ||||||||| |||||||||||||| || |||||||||||| ||| |||||
seq2  CTGACAGACTTTTAAGGGACATTT-ATTAGCCAGTGTTGATTGGTGTGGC  898

seq1  AAACACCAAGGAGGGCCAACATGGGCAAGACAGGTGCTGTCCTTTCTCTC  947
      |||||||||||||||||||| ||||||| ||   |||||| |||||||||
seq2  AAACACCAAGGAGGGCCAAC-TGGGCAATACTACTGCTGT-CTTTCTCTC  946

seq1  ATGGAA-CGCCTTACCTG-CTGGGTTTAAA  975
       ||||| | |||| | || |||||||||||
seq2  CTGGAACCACCTTCCTTGCCTGGGTTTAAA  976

seq1: chr11_69824341_69825389
seq2: B6Ng01-187G21.g_66_1117 (reverse)

seq1  GCTCACT-CACTGA-CAATCCCTTTCTTGTGTTTCACCA-GCTTGGCCTC  47
      ||||||| |||||| ||||||||||| |||| ||||||| ||||||||  
seq2  GCTCACTCCACTGACCAATCCCTTTCATGTGGTTCACCAGGCTTGGCCCT  50

seq1  CACCACGGTGGCAAATTGATCC-AGAGCCTGCACTGCCTGAAGAGACAAG  96
      |||||||||||| ||||||||| |||||||||||||||||||||||| ||
seq2  CACCACGGTGGC-AATTGATCCAAGAGCCTGCACTGCCTGAAGAGAC-AG  98

seq1  AGTCACAGACAGAGCTCAGGAGAGGAAGGCAGCGCACAGCCACCGCA-GG  145
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTCACAGACAGAGCTCAGGAGAGGAAGGCAGCGCACAGCCACCGCAGGG  148

seq1  CTCTGCTTTAAGGCTCACTCACCAGTTCACCACTGCGACTTAACTCT-GG  194
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTGCTTTAAGGCTCACTCACCAGTTCACCACTGCGACTTAACTCTGGG  198

seq1  GTGGACAATCCCTGACAGACTCAAACCACTGCCGATTCCTGTCCTCCTGA  244
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAT-CCTGACAGACTCAAACCACTGCCGATTCCTGTCCTCCTGA  247

seq1  GAGGAGATGGAAGAGTGACTGGTCAGTTGCGGCCTCCCATCTTGTTTGAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGGAAGAGTGACTGGTCAGTTGCGGCCTCCCATCTTGTTTGAC  297

seq1  CCTGACTCTGACCCTGGCCCCGGCCCATGAGGTACCGTCTCAGCTGTTTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCTGACCCTGGCCCCGGCCCATGAGGTACCGTCTCAGCTGTTTG  347

seq1  CCTGCTTCTCCCATCAGGAGGCCAACGTTTCCAAAAGGATTCTTCAGGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTCCCATCAGGAGGCCAACGTTTCCAAAAGGATTCTTCAGGGC  397

seq1  ATTGCCCAGCCCAGTGAGTTCCTTTCCTTTGTCCTGTGGAGAGAAGGGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCAGCCCAGTGAGTTCCTTTCCTTTGTCCTGTGGAGAGAAGGGGG  447

seq1  ACGGCGACAGTGAGGACTCAGTGTCCTCCCCAGCTGCTCTCTCTCATCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCGACAGTGAGGACTCAGTGTCCTCCCCAGCTGCTCTCTCTCATCCT  497

seq1  CCTTCCTCTTACCATACAGCCTTGCAGAGCCACAAACAGTCGAAGAATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTTACCATACAGCCTTGCAGAGCCACAAACAGTCGAAGAATGT  547

seq1  CATTTGCCCCTTCAAAGATCCGGAAGATTCGAATATCTCGGAGCACACGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCCCTTCAAAGATCCGGAAGATTCGAATATCTCGGAGCACACGC  597

seq1  TCCACCCCTGGTTCCTGGCACGCAGGAAGACACAGAAACCTCTGTTGAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCTGGTTCCTGGCACGCAGGAAGACACAGAAACCTCTGTTGAGA  647

seq1  TGTGCCTGTCCACTCTGAACAGATGCCCCCCCCTGCCGAGGAATACTCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTCCACTCTGAACAGATGCCCCCCCCTGCCGAGGAATACTCTG  697

seq1  TACCTTCATGAAGCCCATGCCCCCCATTATTTGGATGCACTCATCTGCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCATGAAGCCCATGCCCCCCATTATTTGGATGCACTCATCTGCCA  747

seq1  CTTTCCAGGCCGCCTCCTGAGGACAGAGAACCAGATGAGTTGGATTTTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGGCCGCCTCCTGAGGACAGAGAACCAGATGAGTTGGATTTTTG  797

seq1  AGCTGAGGTCCTAATCTGGACTCCGCCCTCCCATCACACCTGGGTCCTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGTCCTAATCTGGACTCCGCCCTCCCATCACACCTGGGTCCTCA  847

seq1  CCGAGCAAAAGATTTTGCTGATGGCGGCTTCTATCTGGAAGTCTTTGAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAAAAGATTTTGCTGATGGCGGCTTCTATCTGGAAGTCTTTGAAT  897

seq1  CCCTGGTCCATGTTGGCACTCAGCATGTAAGCCATGGACTAAGGGAGCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCCATGTTGGCACTCAGCATGTAAGCCATGGACTAAGGGAGCAT  947

seq1  GGTCGGGACATGGGGAAGACAACAGGGAAGGGCTGCATCAGACAGAATGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGGACATGGGGAAGACAACAGGGAAGGGCTGCATCAGACAGAATGG  997

seq1  CTAATGCTCAGACCTTCAAGACCAGTGCTGATCTACTCCTCCAACCCTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTCAGACCTTCAAGACCAGTGCTGATCTACTCCTCCAACCCTTG  1047

seq1  AATTC  1049
      |||||
seq2  AATTC  1052