BAC Information

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BAC

Clone NameB6Ng01-187O17
Chromosome11 (Build37)
Map Location 101,565,093 - 101,566,237
singlet/doubletsinglet
Overlap genenone
Upstream geneD11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
Downstream geneDhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187O17.bB6Ng01-187O17.g
ACCGA012363GA012364
length4041,164
definitionB6Ng01-187O17.b B6Ng01-187O17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cattccatttcaaggtaaggtcatatggtttgtgtttacatagcacatta
tatttatccattcatctgctgatgaacacaagttgtttctaaccttattc
taaaatatatatatatatatatatatatatatatatatatatcttgtaca
aattccagtgtcgatatatttttatttcttttagaaatatactttagaag
ttgagttgtggccagatgttagtggcacacttttagttccagcattcagg
aggcagagccaagtggatctctgtgagtttcgggccagcctggtgtacat
agagagttccaggtcatcaggaactgtgtagagaccccatctttaaaaaa
aaagaaaaacccaagagagaaagaggaagatggtgaggatggtgaggatt
ggga
gaattcacagaaatcctttgcctcctgagtgttggaattagctttggttg
gttctctttgagctgagccttgggacagaaatggagatgagtggattgaa
aaggtaaaagctgctctttagagacctgtgtttgctcagtcctactttct
gccccaaggagggaagtgtttctgctctcttcctgttctaccccatcccg
cttcatcctgagtttctcccttagtttcttccttccacccctctcctcct
ctttcagctcatctctggcatcctgggcttttacaaggtccctgagtttt
gggtcagtgctactccaagctacagggccacctttgtctctttgttcctc
aggttctgctgctgccgggtaccagggctctgtgggactttgtacagggg
ttatttccagtctaaattactgagtgaatttctgtgcagaaatcaagcct
tcattagaaacacagctgttccagcccgatcttgttcagttaataattta
ctgcccgggaaatgggagtaaaatgagcccagaggcatctcgggtgtgaa
ctttggggttcctctgacagcaatttgtgtaatttgtccagacagatcct
aaagccgtctgaattctaatgtcctgcctgccatcctgaccctgtgggtc
cattttattaacatggttggctttgatttatgttttttttttaaattgct
ctggtttctctgtgcaactcatgaccagcgcggtgctcagtgtggaaatg
actttgtgaggaatcaggtgtggagtcctggagccgctgcaggtttcttg
ctccactctgcattgctgagatgtcaaacccctgtgtgcagggcctggct
ttaaaaattctgtaccgggtgactttctctgctccccacttcccaattgc
tgtaagtagagcattagggccttctaaggtcatcatgcccttttctcctg
ctcagaggccattcctgaaaatcctgttgctgagaacctttctaggaagt
tcttgggctacggcgttcaagaatctttacagcttcaccagtccaaggtc
actttaaagttttacacagagataaaggaatttgcatagttgcagaatgg
aacttacaatatcttggtaattgcaatatttggggaaaggagaccgaagg
atgagacctatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101565093_101566237
seq2: B6Ng01-187O17.g_72_1235

seq1  GAATTCACAGAAATCCTTTGCCTCCTGAGTGTTGGAATTAGCTTTGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAATCCTTTGCCTCCTGAGTGTTGGAATTAGCTTTGGTTG  50

seq1  GTTCTCTTTGAGCTGAGCCTTGGGACAGAAATGGAGATGAGTGGATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTGAGCTGAGCCTTGGGACAGAAATGGAGATGAGTGGATTGAA  100

seq1  AAGGTAAAAGCTGCTCTTTAGAGACCTGTGTTTGCTCAGTCCTACTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAAGCTGCTCTTTAGAGACCTGTGTTTGCTCAGTCCTACTTTCT  150

seq1  GCCCCAAGGAGGGAAGTGTTTCTGCTCTCTTCCTGTTCTACCCCATCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGGAGGGAAGTGTTTCTGCTCTCTTCCTGTTCTACCCCATCCCG  200

seq1  CTTCATCCTGAGTTTCTCCCTTAGTTTCTTCCTTCCACCCCTCTCCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCTGAGTTTCTCCCTTAGTTTCTTCCTTCCACCCCTCTCCTCCT  250

seq1  CTTTCAGCTCATCTCTGGCATCCTGGGCTTTTACAAGGTCCCTGAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTCATCTCTGGCATCCTGGGCTTTTACAAGGTCCCTGAGTTTT  300

seq1  GGGTCAGTGCTACTCCAAGCTACAGGGCCACCTTTGTCTCTTTGTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTGCTACTCCAAGCTACAGGGCCACCTTTGTCTCTTTGTTCCTC  350

seq1  AGGTTCTGCTGCTGCCGGGTACCAGGGCTCTGTGGGACTTTGTACAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGCTGCTGCCGGGTACCAGGGCTCTGTGGGACTTTGTACAGGGG  400

seq1  TTATTTCCAGTCTAAATTACTGAGTGAATTTCTGTGCAGAAATCAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCAGTCTAAATTACTGAGTGAATTTCTGTGCAGAAATCAAGCCT  450

seq1  TCATTAGAAACACAGCTGTTCCAGCCCGATCTTGTTCAGTTAATAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGAAACACAGCTGTTCCAGCCCGATCTTGTTCAGTTAATAATTTA  500

seq1  CTGCCCGGGAAATGGGAGTAAAATGAGCCCAGAGGCATCTCGGGTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGGGAAATGGGAGTAAAATGAGCCCAGAGGCATCTCGGGTGTGAA  550

seq1  CTTTGGGGTTCCTCTGACAGCAATTTGTGTAATTTGTCCAGACAGATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGTTCCTCTGACAGCAATTTGTGTAATTTGTCCAGACAGATCCT  600

seq1  AAAGCCGTCTGAATTCTAATGTCCTGCCTGCCATCCTGACCCTGTGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGTCTGAATTCTAATGTCCTGCCTGCCATCCTGACCCTGTGGGTC  650

seq1  CATTTTATTAACATGGTTGGCTTTGATTTATGTTTTTTTTTTAAATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTAACATGGTTGGCTTTGATTTATGTTTTTTTTTTAAATTGCT  700

seq1  CTGGTTTCTCTGTGCAACTCATGACCAGCGCGGTGCTCAGTGTGGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTCTGTGCAACTCATGACCAGCGCGGTGCTCAGTGTGGAAATG  750

seq1  ACTTTGTGAGGAATCAGGTGTGGAGTCCTGGAGCCGCTGCAGGTTTC-TG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTTTGTGAGGAATCAGGTGTGGAGTCCTGGAGCCGCTGCAGGTTTCTTG  800

seq1  CTCCACTCTGCATTGCTGAGATGTCAAACCCCTGTGTGCAGGG-CTGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCCACTCTGCATTGCTGAGATGTCAAACCCCTGTGTGCAGGGCCTGGCT  850

seq1  TT-AAAATTCTGTACCGGGTGAC-TTCTCTGCTCCCCAC-TCCCAA-TGC  894
      || |||||||||||||||||||| ||||||||||||||| |||||| |||
seq2  TTAAAAATTCTGTACCGGGTGACTTTCTCTGCTCCCCACTTCCCAATTGC  900

seq1  TGTAAGTAGAGCA-TAGGGGCCTCTAAGGTCATCATGCCCTTTTCTCCTG  943
      ||||||||||||| ||||| | ||||||||||||||||||||||||||||
seq2  TGTAAGTAGAGCATTAGGGCCTTCTAAGGTCATCATGCCCTTTTCTCCTG  950

seq1  CCCAGAGGCCA-TCCTG-AAATCCTGTTGCTGAGAACC-TTCTA-GAAGG  989
      | ||||||||| ||||| |||||||||||||||||||| ||||| |||| 
seq2  CTCAGAGGCCATTCCTGAAAATCCTGTTGCTGAGAACCTTTCTAGGAAGT  1000

seq1  TCTT-GGCTACCGCGTTCAAGAATC-TTACAGCCTCACCAGT-CAAGG-C  1035
      |||| |||||| ||||||||||||| ||||||| |||||||| ||||| |
seq2  TCTTGGGCTACGGCGTTCAAGAATCTTTACAGCTTCACCAGTCCAAGGTC  1050

seq1  ACCTTAAAG-TTTACACAGAGATAAAGGAATTTGCATAGTTGCAG-ATGG  1083
      || |||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTTAAAGTTTTACACAGAGATAAAGGAATTTGCATAGTTGCAGAATGG  1100

seq1  -ACTTAC-ATATCT--GTAATTGC-ATATTTGGGGAAGGAAGACCGGAGG  1128
       |||||| ||||||  |||||||| |||||||||||| | |||||| |||
seq2  AACTTACAATATCTTGGTAATTGCAATATTTGGGGAAAGGAGACCGAAGG  1150

seq1  ATTGAGACCCCTATCTC  1145
      | |||||  ||||||||
seq2  A-TGAGA--CCTATCTC  1164