BAC Information

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BAC

Clone NameB6Ng01-188E05
Chromosome11 (Build37)
Map Location 29,232,675 - 29,233,842
singlet/doubletsinglet
Overlap geneLOC672637
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104
Downstream geneLOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E05.bB6Ng01-188E05.g
ACCGA012606GA012607
length1,177971
definitionB6Ng01-188E05.b B6Ng01-188E05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgtaccccatttttaaatagagttatttggtt
ttctggaatcttacttcttgagttttttgtatatattggataatagccct
ctatcagatgtaggattggtaaagatcttttcccaatctgtctttcttaa
cttggctggcactagtccttttctctctttcagtgttaacacatctcttc
tgggacagatgtgagcatatgtcacaagcccacctggtcataacattcca
ttctccagactctgttagggattgagcatgtggcccaattgagaatcctt
ctctggaactggtgaagggagagacaggacttgctccaaagatccccaaa
gtagacggtgcaagcctatcactgtgagcaacctacttctctggcgtgga
agatggaagaatatgatttcatgcacagaggaatctgagccgagactaga
agagggaagtgtgaaagtcccaatgagataacttccatctaggcccaaag
acaaacccatccaggaacctcattcattcttatcctcattttccctctct
ttctctctctccttctttcctttcctccatccctctctcacttctttcat
tttttgacagcccattcttgtttaatgggaaaaaacaaacaaacaaacaa
aaaatcaaaacactgcaacaatagcaacagacatttcttccaatccagac
agctctgagtttctaccttgggaggtggtctgtacacacctaaaccatag
catggccttgttcataaggctatttgcctgctcctgaggcttcatgttct
cctgctgcatcttctcttcagatgcaaacacaacttccaccaagtctgtg
gagtcaatgtagttggccttaatggcgatcacaaagtgtcctctattcca
aaggaaggtggggtattcggggccacaatctgggtttggtctggctgggc
tacattgaccaagattgcattccccattgcaataaacatgtggaatttgt
gtggtgctgagcttctttaatcatgggaacaatgttgctcttcttcttgg
ccaattgatgatgtccagctaaaggtagtaaggaatgccacctcaacaga
acatccagcaatattccagagaacctgggagaaacttgtggtaaccttga
aggggctgcctaaggctagagcaactt
gaattctgtgtaggctggcctctaactcacagacctatatctacctctgc
ctcctaagtgctaggatcataggtatgtgccatcatgctcagaaaataaa
acagatgtttattgctggaggttaaatttctaaacttagaccaggagaac
ttaaaaaaaaatcacatttggctacatgagaaatttctgtagataaaaat
caatctaaaaataagagaaaaaagtgagaggaaggagggaggaaagtaaa
caaagccaggagccgctcctctcttacttttttttctctcttatatttcg
attagatttttatttaaattagtagttttcaacctgtaggttaaaacacc
tctgacaaactatatttcccaaaatatttacaccatgactcataactaga
aaaattacagttataaagtagtaatgaaattaattattttttcgaaaaat
gtttatttatacactgtacactatagctgtcttcagacactccagaaaac
agcatcagatttggttacggatggttgtgagcccaccatgtgggttgctg
ggatttgaactcaaggcctttggaagagcagtcattgcttcttaaccacc
ttggagccatctccaccagcctgaaataattaattaattattttattttt
ttattgtttttggtttcgaagacagggtttcctcttgtattaggcctggc
ttgtctggactcacctctgtgaaaacaggctggcctccaactcgaaatcc
ccctgcctctctgccctccgagtgcgggattaagacgtgtgccaaccttc
gccccgcgaatgaaatatattataggtgtggagtcattacacacatgaga
actgttatagttgcgcaccatatgagagcgtgaaacactggtccatgacc
aatttgacaaattttgctcaattgcgagagagattatctggaaaactgcg
tcggttgccataaaagagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29232675_29233842
seq2: B6Ng01-188E05.b_46_1222

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAAATAGAGTTATTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAAATAGAGTTATTTGGTT  50

seq1  TTCTGGAATCTTACTTCTTGAGTTTTTTGTATATATTGGATAATAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATCTTACTTCTTGAGTTTTTTGTATATATTGGATAATAGCCCT  100

seq1  CTATCAGATGTAGGATTGGTAAAGATCTTTTCCCAATCTGTCTTTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATGTAGGATTGGTAAAGATCTTTTCCCAATCTGTCTTTCTTAA  150

seq1  CTTGGCTGGCACTAGTCCTTTTCTCTCTTTCAGTGTTAACACATCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGGCACTAGTCCTTTTCTCTCTTTCAGTGTTAACACATCTCTTC  200

seq1  TGGGACAGATGTGAGCATATGTCACAAGCCCACCTGGTCATAACATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGATGTGAGCATATGTCACAAGCCCACCTGGTCATAACATTCCA  250

seq1  TTCTCCAGACTCTGTTAGGGATTGAGCATGTGGCCCAATTGAGAATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGACTCTGTTAGGGATTGAGCATGTGGCCCAATTGAGAATCCTT  300

seq1  CTCTGGAACTGGTGAAGGGAGAGACAGGACTTGCTCCAAAGATCCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAACTGGTGAAGGGAGAGACAGGACTTGCTCCAAAGATCCCCAAA  350

seq1  GTAGACGGTGCAAGCCTATCACTGTGAGCAACCTACTTCTCTGGCGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACGGTGCAAGCCTATCACTGTGAGCAACCTACTTCTCTGGCGTGGA  400

seq1  AGATGGAAGAATATGATTTCATGCACAGAGGAATCTGAGCCGAGACTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAGAATATGATTTCATGCACAGAGGAATCTGAGCCGAGACTAGA  450

seq1  AGAGGGAAGTGTGAAAGTCCCAATGAGATAACTTCCATCTAGGCCCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGTGTGAAAGTCCCAATGAGATAACTTCCATCTAGGCCCAAAG  500

seq1  ACAAACCCATCCAGGAACCTCATTCATTCTTATCCTCATTTTCCCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCATCCAGGAACCTCATTCATTCTTATCCTCATTTTCCCTCTCT  550

seq1  TTCTCTCTCTCCTTCTTTCCTTTCCTCCATCCCTCTCTCACTTCTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCCTTCTTTCCTTTCCTCCATCCCTCTCTCACTTCTTTCAT  600

seq1  TTTTTGACAGCCCATTCTTGTTTAATGGGAAAAAACAAACAAACAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACAGCCCATTCTTGTTTAATGGGAAAAAACAAACAAACAAACAA  650

seq1  AAAATCAAAACACTGCAACAATAGCAACAGACATTTCTTCCAATCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAACACTGCAACAATAGCAACAGACATTTCTTCCAATCCAGAC  700

seq1  AGCTCTGAGTTTCTACCTTGGGAGGTGGTCTGTACACACCTAAACCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGAGTTTCTACCTTGGGAGGTGGTCTGTACACACCTAAACCATAG  750

seq1  CATGGCCTTGTTCATAAGGCTATTTGCCTGCTCCTGAGGCTTCATGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTTGTTCATAAGGCTATTTGCCTGCTCCTGAGGCTTCATGTTCT  800

seq1  CCTGCTGCATCTTCTCTTCAGATGCAAACACAACTTCCACCAAGTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCATCTTCTCTTCAGATGCAAACACAACTTCCACCAAGTCTGTG  850

seq1  GAGTCAATGTAGTTGGCCTTAATGGCGATCACAAAGTGTCCTCTATTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATGTAGTTGGCCTTAATGGCGATCACAAAGTGTCCTCTATTCCA  900

seq1  AAGGAAGGTGGGGTATTCGGGGCCACAATCTGGGTTTGGTCTGGCTGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTGGGGTATTCGGGGCCACAATCTGGGTTTGGTCTGGCTGGGC  950

seq1  TACATTGACCAAGATTGCATTCCCCATTGCAATAAACATGTGGAATTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGACCAAGATTGCATTCCCCATTGCAATAAACATGTGGAATTTGT  1000

seq1  GTGGGTGCTGAGCTTCTTTAATCATGGGAACAATGTTGCTCTTCTTCTTG  1050
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-GGTGCTGAGCTTCTTTAATCATGGGAACAATGTTGCTCTTCTTCTTG  1049

seq1  GCCAAATTGATGATGTCCCAGCTAAA-GTAGTA--GGATG-CACTCAAAC  1096
      ||| |||||||||||| ||||||||| ||||||  | ||| |||   |||
seq2  GCC-AATTGATGATGT-CCAGCTAAAGGTAGTAAGGAATGCCACCTCAAC  1097

seq1  AGACCATCCCAGCCAATAT--CAGAG-ACGTGGGAGA---CTGTGGTA--  1138
      ||| ||| |||| ||||||  ||||| || |||||||    |||||||  
seq2  AGAACAT-CCAG-CAATATTCCAGAGAACCTGGGAGAAACTTGTGGTAAC  1145

seq1  CCTGA--GGGCTGCCCCAGGGTAGAGCAACTT  1168
      | |||  ||||||||  ||| |||||||||||
seq2  CTTGAAGGGGCTGCCTAAGGCTAGAGCAACTT  1177