BAC Information

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BAC

Clone NameB6Ng01-188E15
Chromosome11 (Build37)
Map Location 55,983,980 - 56,117,953
singlet/doubletdoublet
Overlap geneLOC100040816
Upstream geneSlc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1, Nmur2
Downstream geneLOC624168, Gria1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E15.bB6Ng01-188E15.g
ACCGA012626GA012627
length534928
definitionB6Ng01-188E15.b B6Ng01-188E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,117,414 - 56,117,953)(55,983,980 - 55,984,910)
sequence
tctgtgtaattattccatgcattggtgactttacacattgctgtcacaga
atagctaaccaaagcaccttcaagggaaagggattaattcgatcatctag
ttctgtggggatacagggccatcctggtggggaaggcaggtagcgtgcct
agcatatcgcatcaacaggctggaaggaaagagaaccagaaattgggctg
ggctataaaatgtcaaagcttacatccaacgacatatctcttcaacaggg
ctccacctcctaagggttccataatctccccaaacagtaccaataactgg
ttccaagtgcccaaacacgtgatcctaaggatgacagtccacatttaaac
taacaacattctccatatatatggacctaaggggacctagagcaataccc
ccaaagcaatgaacttacctaatgcctgaaacttagtttttaagtattat
ttttcattaacgtgagtaaggttatgtgcaatgccaatattactgccaag
tctattgcccttttatttttagggtagtgtgtgt
gaattctatccccaaaatgaaaatagagaactaataggtatgtggtacct
aaggttctggccaagaaatgtagtagatagcttcaaagtcatatcgaata
ttgctcattctctctctctctctctctctctctctctctctctctctctc
tccctctctctctccctccctctatctcttaagagactacataatgttat
ttacacatacatgggcttgaattttgaattatctctgtagccatccttct
actgacatcattacttgcttccctctctcttacaaccaccaaccactcca
gctccaggggatctgatgccctcttttggcctccaaggaaaacatgcacg
cagacttatgaaattaaaaataaaaactgaaaacaaggaagcattttatt
ccctagtatttctttctgtagtttcttatccattttgttttcgtttccca
gattccaagcacaggaggaaaacctgtggtatttgtctctgcaggtcttg
cttatttcatgtagcatgaaccttcagttccatccattttcctgctaatg
agaaaatttcattcttctttgtggctgagcaaaaagtcccctgtgtctat
gtaccaaatctgatccccacattctctgatgagctccaaaggctaatttc
atagtttagctattgtggatcgctctgtaataaacatggccactctttta
cagggcagaaaacagcaacccaggactgtacagagaaacctgtggtcagc
ctatgagtaggtaaacttggagcctggtcagccaaacaactttttgttgg
cagggtttttgtgtgtgtgtgctttcctaaattttaatgttaatcagagc
tcaatcttgacaggcccatccttttagggaacttttagttctaagataaa
aaaagaaaagggattgatgatgatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56117414_56117953
seq2: B6Ng01-188E15.b_46_585 (reverse)

seq1  ACACACACTACCCTAAAAATAAAAGGGCAATAGACTTGGCAGTAATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTACCCTAAAAATAAAAGGGCAATAGACTTGGCAGTAATATTG  50

seq1  GCATTGCACATAACCTTACTCACGTTAATGAAAAATAATACTTAAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCACATAACCTTACTCACGTTAATGAAAAATAATACTTAAAAACT  100

seq1  AAGTTTCAGGCATTAGGTAAGTTCATTGCTTTGGGGGTATTGCTCTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGGCATTAGGTAAGTTCATTGCTTTGGGGGTATTGCTCTAGGT  150

seq1  CCCCTTAGGTCCATATATATGGAGAATGTTGTTAGTTTAAATGTGGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAGGTCCATATATATGGAGAATGTTGTTAGTTTAAATGTGGACTG  200

seq1  TCATCCTTAGGATCACGTGTTTGGGCACTTGGAACCAGTTATTGGTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTAGGATCACGTGTTTGGGCACTTGGAACCAGTTATTGGTACTG  250

seq1  TTTGGGGAGATTATGGAACCCTTAGGAGGTGGAGCCCTGTTGAAGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAGATTATGGAACCCTTAGGAGGTGGAGCCCTGTTGAAGAGATA  300

seq1  TGTCGTTGGATGTAAGCTTTGACATTTTATAGCCCAGCCCAATTTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTTGGATGTAAGCTTTGACATTTTATAGCCCAGCCCAATTTCTGGT  350

seq1  TCTCTTTCCTTCCAGCCTGTTGATGCGATATGCTAGGCACGCTACCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCTTCCAGCCTGTTGATGCGATATGCTAGGCACGCTACCTGCC  400

seq1  TTCCCCACCAGGATGGCCCTGTATCCCCACAGAACTAGATGATCGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCAGGATGGCCCTGTATCCCCACAGAACTAGATGATCGAATTA  450

seq1  ATCCCTTTCCCTTGAAGGTGCTTTGGTTAGCTATTCTGTGACAGCAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCCCTTGAAGGTGCTTTGGTTAGCTATTCTGTGACAGCAATGT  500

seq1  GTAAAGTCACCAATGCATGGAATAATTACACAGAGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTCACCAATGCATGGAATAATTACACAGAGAATTC  540

seq1: chr11_55983980_55984910
seq2: B6Ng01-188E15.g_67_994

seq1  GAATTCTATCCCCAAAATGAAAATAGAGAACTAATAGGTATGTGGTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCCAAAATGAAAATAGAGAACTAATAGGTATGTGGTACCT  50

seq1  AAGGTTCTGGCCAAGAAATGTAGTAGATAGCTTCAAAGTCATATCGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTGGCCAAGAAATGTAGTAGATAGCTTCAAAGTCATATCGAATA  100

seq1  TTGCTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  150
      ||||||||      ||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAT------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  144

seq1  TCTCTCTCCCTCTCTCTCTCCCTCCCTCTATCTCTTAAGAGACTACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTCTCTCTCTCCCTCCCTCTATCTCTTAAGAGACTACATAA  194

seq1  TGTTATTTACACATACATGGGCTTGAATTTTGAATTATCTCTGTAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTACACATACATGGGCTTGAATTTTGAATTATCTCTGTAGCCAT  244

seq1  CCTTCTACTGACATCATTACTTGCTTCCCTCTCTCTTACAACCACCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACTGACATCATTACTTGCTTCCCTCTCTCTTACAACCACCAACC  294

seq1  ACTCCAGCTCCAGGGGATCTGATGCCCTCTTTTGGCCTCCAAGGAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCTCCAGGGGATCTGATGCCCTCTTTTGGCCTCCAAGGAAAACA  344

seq1  TGCACGCAGACTTATGAAATTAAAAATAAAAACTGAAAACAAGGAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCAGACTTATGAAATTAAAAATAAAAACTGAAAACAAGGAAGCAT  394

seq1  TTTATTCCCTAGTATTTCTTTCTGTAGTTTCTTATCCATTTTGTTTTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCTAGTATTTCTTTCTGTAGTTTCTTATCCATTTTGTTTTCGT  444

seq1  TTCCCAGATTCCAAGCACAGGAGGAAAACCTGTGGTATTTGTCTCTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATTCCAAGCACAGGAGGAAAACCTGTGGTATTTGTCTCTGCAG  494

seq1  GTCTTGCTTATTTCATGTAGCATGAACCTTCAGTTCCATCCATTTTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTATTTCATGTAGCATGAACCTTCAGTTCCATCCATTTTCCTG  544

seq1  CTAATGAGAAAATTTCATTCTTCTTTGTGGCTGAGCAAAAAGTCCCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGAAAATTTCATTCTTCTTTGTGGCTGAGCAAAAAGTCCCCTGT  594

seq1  GTCTATGTACCAAATCTGATCCCCACATTCTCTGATGAGCTCCAAAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTACCAAATCTGATCCCCACATTCTCTGATGAGCTCCAAAGGCT  644

seq1  AATTTCATAGTTTAGCTATTGTGGATCGCTCTGTAATAAACATGGCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATAGTTTAGCTATTGTGGATCGCTCTGTAATAAACATGGCCACT  694

seq1  CTTTTACAGGGCAGAAAACAGCAACCCAGGACTGTACAGAGAAACCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAGGGCAGAAAACAGCAACCCAGGACTGTACAGAGAAACCTGTG  744

seq1  GTCAGCCTATGAGTAGGTAAACTTGGAGCCTGGTCAGCCAAACAACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTATGAGTAGGTAAACTTGGAGCCTGGTCAGCCAAACAACTTTT  794

seq1  TGTTGGCAGGGTTTTTGTGTGTGTGTGC-TTCCTAAA-TTTAATGTTAAT  848
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  TGTTGGCAGGGTTTTTGTGTGTGTGTGCTTTCCTAAATTTTAATGTTAAT  844

seq1  CAGAGC-CAATCTTGACAGGCCCATCC-TTTAGGGAACTTTTAGTCTAAA  896
      |||||| |||||||||||||||||||| |||||||||||||||||   ||
seq2  CAGAGCTCAATCTTGACAGGCCCATCCTTTTAGGGAACTTTTAGTTCTAA  894

seq1  GATAAAAAAAGAAAAGGGTATTGATGATGATGGTG  931
      |||||||||||||||||| ||||||||||||||||
seq2  GATAAAAAAAGAAAAGGG-ATTGATGATGATGGTG  928