BAC Information

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BAC

Clone NameB6Ng01-188H06
Chromosome11 (Build37)
Map Location 59,976,709 - 60,126,207
singlet/doubletdoublet
Overlap geneRai1, Srebf1, Tom1l2
Upstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt
Downstream geneLOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188H06.bB6Ng01-188H06.g
ACCGA012748GA012749
length3111,156
definitionB6Ng01-188H06.b B6Ng01-188H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,125,897 - 60,126,207)(59,976,709 - 59,977,858)
sequence
tctccagctgtccaagcaaaccgacagctttttgtctggaattagtctca
gcaccaaagtgaacaatgctagagagggaccttcagaccagataaggttg
cctcactgcaagtcctgggaaagggctagctcagatggaagctgcatacc
aggagactagctgcttaccaagaccttaatgtgactgttttcatcctgtt
actgagaaactgtgttatagctcataagcaaagggttctggcctggaagc
caggcagagaagggtgcatgcttgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgt
gaattcaagagcagtctgggccacatgacatactgtcatgttccccaacc
cccaccccaaaagagaaaaatgaggcacacctcagctatagactatggtt
caggccagggctacaggtttgtgttctacagtgttacaggtgaggggaac
aaatgactaggcaaatgtagctgaacactcagttatcatggtggaaggca
gagagggaagaatcgatgatctagagagggcttggcctttagggctagag
acaccacagattactgtctctctgctttctgaaaactaatttcaaggtgt
ggccagctgagttctgggtagcttttgtccccctgctttagagagggcgg
agccccacccagcatggtgggggaagtatcctccagctgtgtgcctgact
ttggtttccttcgctctcatatggcctcttagctctcttaaaccctatgc
aggcttctaaagttataattgatatgagacctccagtacacaaagtcctc
agcagaagggtccggctccccatctggcaccaactgctcagagatggcct
ctgtgcctctggcatgtagtaagggcctggcagatgaacactgcctttgg
cctcttcactgtcctcccagggtgatgagtggcaggtatttcagcaattt
ctcggatttctgtgtactcaccagattctgcatctggaacccaaaccacg
gttttttgatttttgtgagcatctaccatgtgctagtggatgggtgctat
gacagaaccgggaactgtggcctggaagaagctactgctgctaaggatag
ggtttcagggagggaatccaatgtaatctgaggagagatggtccttgtgt
ggagatgacaatccatggatagtgtgccaggcaaattgaagagggtagag
catctagcattttgatgcccagtgtgtttaaaaggctgggtatgcaaaaa
gtcttttaaaggatcttgtaagtgggcaccatgttggagggggcctttgg
tggccttgagctagcagctctgagccctgacaccaacaggcagacagttc
tcagtcagctgcattctggtactgctctagcctgtagaagcgaacattca
ctcttcatggccagtacttccttctgtgtgccctcagagttcccaagaca
cgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60125897_60126207
seq2: B6Ng01-188H06.b_50_360 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACAAGCATGCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACAAGCATGCACCC  50

seq1  TTCTCTGCCTGGCTTCCAGGCCAGAACCCTTTGCTTATGAGCTATAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCTGGCTTCCAGGCCAGAACCCTTTGCTTATGAGCTATAACAC  100

seq1  AGTTTCTCAGTAACAGGATGAAAACAGTCACATTAAGGTCTTGGTAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAGTAACAGGATGAAAACAGTCACATTAAGGTCTTGGTAAGCA  150

seq1  GCTAGTCTCCTGGTATGCAGCTTCCATCTGAGCTAGCCCTTTCCCAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTCCTGGTATGCAGCTTCCATCTGAGCTAGCCCTTTCCCAGGAC  200

seq1  TTGCAGTGAGGCAACCTTATCTGGTCTGAAGGTCCCTCTCTAGCATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGAGGCAACCTTATCTGGTCTGAAGGTCCCTCTCTAGCATTGTT  250

seq1  CACTTTGGTGCTGAGACTAATTCCAGACAAAAAGCTGTCGGTTTGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGTGCTGAGACTAATTCCAGACAAAAAGCTGTCGGTTTGCTTGG  300

seq1  ACAGCTGGAGA  311
      |||||||||||
seq2  ACAGCTGGAGA  311

seq1: chr11_59976709_59977858
seq2: B6Ng01-188H06.g_66_1221

seq1  GAATTCAAGAGCAGTCTGGGCCACATGACATACTGTCATGTTCCCCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCAGTCTGGGCCACATGACATACTGTCATGTTCCCCAACC  50

seq1  CCCACCCCAAAAGAGAAAAATGAGGCACACCTCAGCTATAGACTATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCAAAAGAGAAAAATGAGGCACACCTCAGCTATAGACTATGGTT  100

seq1  CAGGCCAGGGCTACAGGTTTGTGTTCTACAGTGTTACAGGTGAGGGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGGGCTACAGGTTTGTGTTCTACAGTGTTACAGGTGAGGGGAAC  150

seq1  AAATGACTAGGCAAATGTAGCTGAACACTCAGTTATCATGGTGGAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTAGGCAAATGTAGCTGAACACTCAGTTATCATGGTGGAAGGCA  200

seq1  GAGAGGGAAGAATCGATGATCTAGAGAGGGCTTGGCCTTTAGGGCTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGAATCGATGATCTAGAGAGGGCTTGGCCTTTAGGGCTAGAG  250

seq1  ACACCACAGATTACTGTCTCTCTGCTTTCTGAAAACTAATTTCAAGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGATTACTGTCTCTCTGCTTTCTGAAAACTAATTTCAAGGTGT  300

seq1  GGCCAGCTGAGTTCTGGGTAGCTTTTGTCCCCCTGCTTTAGAGAGGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTGAGTTCTGGGTAGCTTTTGTCCCCCTGCTTTAGAGAGGGCGG  350

seq1  AGCCCCACCCAGCATGGTGGGGGAAGTATCCTCCAGCTGTGTGCCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACCCAGCATGGTGGGGGAAGTATCCTCCAGCTGTGTGCCTGACT  400

seq1  TTGGTTTCCTTCGCTCTCATATGGCCTCTTAGCTCTCTTAAACCCTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCCTTCGCTCTCATATGGCCTCTTAGCTCTCTTAAACCCTATGC  450

seq1  AGGCTTCTAAAGTTATAATTGATATGAGACCTCCAGTACACAAAGTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTAAAGTTATAATTGATATGAGACCTCCAGTACACAAAGTCCTC  500

seq1  AGCAGAAGGGTCCGGCTCCCCATCTGGCACCAACTGCTCAGAGATGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGGGTCCGGCTCCCCATCTGGCACCAACTGCTCAGAGATGGCCT  550

seq1  CTGTGCCTCTGGCATGTAGTAAGGGCCTGGCAGATGAACACTGCCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTCTGGCATGTAGTAAGGGCCTGGCAGATGAACACTGCCTTTGG  600

seq1  CCTCTTCACTGTCCTCCCAGGGTGATGAGTGGCAGGTATTTCAGCAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCACTGTCCTCCCAGGGTGATGAGTGGCAGGTATTTCAGCAATTT  650

seq1  CTCGGATTTCTGTGTACTCACCAGATTCTGCATCTGGAACCCAAACCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGATTTCTGTGTACTCACCAGATTCTGCATCTGGAACCCAAACCACG  700

seq1  GTTTTTTGATTTTTGTGAGCATCTACCATGTGCTAGTGGATGGGTGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGATTTTTGTGAGCATCTACCATGTGCTAGTGGATGGGTGCTAT  750

seq1  GACAGAACCGGGAACTGTGGCCTGGAAGAAGCTACTGCTGCTAAGGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACCGGGAACTGTGGCCTGGAAGAAGCTACTGCTGCTAAGGATAG  800

seq1  GGTTTCAGGGAGGGAATCCAATGTAATCTGAGGAGAGATGGTCCTTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGGGAGGGAATCCAATGTAATCTGAGGAGAGATGGTCCTTGTGT  850

seq1  GGAGATGACAATCCATGGATAGTGTGCCAGGCAAA-TGGAGAGGGTAGAG  899
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  GGAGATGACAATCCATGGATAGTGTGCCAGGCAAATTGAAGAGGGTAGAG  900

seq1  CATCCTAGCA-TTTGATGCCCAGTGTGTTT-AAAGGCTGGGTATGCAAAA  947
      ||| |||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CAT-CTAGCATTTTGATGCCCAGTGTGTTTAAAAGGCTGGGTATGCAAAA  949

seq1  AGTCTTTTAAAGGATCTTGT-AGTGGGCACCATGGTTGGA-GGGGCCTTT  995
      |||||||||||||||||||| |||||||||||| |||||| |||||||||
seq2  AGTCTTTTAAAGGATCTTGTAAGTGGGCACCAT-GTTGGAGGGGGCCTTT  998

seq1  GGT-GCCCTGAGCTAGCAGCTCCTGAGCCTGAACACCACCA-GCAGACAG  1043
      ||| ||| ||||||||||||| |||||||   |||||| || ||||||||
seq2  GGTGGCCTTGAGCTAGCAGCT-CTGAGCCCTGACACCAACAGGCAGACAG  1047

seq1  TCTCCAGTCAGCTGCATTCT-GTACTGCTC-AG-CTGTAG-AGCGAACAT  1089
      |   |||||||||||||||| ||||||||| || |||||| |||||||||
seq2  TTCTCAGTCAGCTGCATTCTGGTACTGCTCTAGCCTGTAGAAGCGAACAT  1097

seq1  TCACTTCTTCATTGGGCCAGCATGTTCCTTCTGTGTGCCCCCAGAGTTCC  1139
      |||| |||||||  |||||| |  |||||||||||||||| |||||||||
seq2  TCAC-TCTTCAT--GGCCAGTA-CTTCCTTCTGTGTGCCCTCAGAGTTCC  1143

seq1  CAAG--ACGCTGT  1150
      ||||  |||||||
seq2  CAAGACACGCTGT  1156