BAC Information

Click to search

BAC

Clone NameB6Ng01-189J22
Chromosome11 (Build37)
Map Location 89,971,140 - 89,972,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp, Tmem100
Downstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189J22.bB6Ng01-189J22.g
ACCGA013594GA013595
length1,1191,005
definitionB6Ng01-189J22.b B6Ng01-189J22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcaccattaaaatggcctccaacaattgtatctcttgttact
aacaagaaaaccctcaccatggttcattaaacccttttcaacaggctttt
agctcttttcactaatgaaacatggttgtcctctttgtccttggggggtt
taaatgcagccagagtaacgatcactgtcaggtttgggtgcctgtagtca
atttacacatcaatcctgactctctccttcaggaccccctccccctccat
acaagttgtgcttggcaacaagatagctgaggaggaatccagtctgtgtc
agcaccattccaccaatttcagtcaaggacatttagccaaaaagcaactt
cttcaaactctaactgcaaacagcagatcaactccgtcctgccctgccct
ggaagtgaggagcttggatttggcttccatgactcatagttcagagtttc
tactttttttcttttatttatccacttgacatcctgatcatcacccccac
ccccatccctcatccttcctctcctccaagttccacccttacaaatccct
cctcccgttacaccctcctcttcttttcagagaagggaagccccccttgg
gtaccaccccaccctgggacatccagtccaagtaggccttaagtacatcc
tctctcactgaggcccaaccaggcagcccaggtaggggaaggggatacaa
aggcaggcaacagagtcagaggcagcatcccatccgattgttaggtgact
gaaggttcagagttcttttattctttctaggattctatctccagatctag
gggacagaagttgtttccccatagttcattatgtcctcactggtgacaga
cctgggaagtgggccttagagatgaataagcaatctattgtgaacttata
ctgttcccactgcctaccctaagacttctatgacttacttaagcctgctt
tctttttgttcgagaaccccttttgcgatcacttctggccagtggtcagt
gtggctttataaaatacagttgcctttaaaaattaatataaaagcattcc
tttaaaattagtttttgggatcgaatctgatccatacctttcaacttgga
tcatcctctgactttcttt
gaattctctttagtgagaggttggggcatttgttggaaacaatcatgagc
aatgtttaaaactggggctgcttaaagtagaggtcacatttgagaacaag
aagaagctgagaagacttctgataggaaaaaatgaagactaagatgctca
tgggagactttgaaaaaactgcagcgtctttacagagatccaaaaggctg
tgcttgtgtgcagggctgtgcccagcaaaggcctaagaatgtcccaactt
cttaccttgacctccaggccctactttagcaggaagtaaaggctaacaag
gtagagttgtgaactctccagcagggtagtgaaggcacactaaaaacccc
acagagagatgcttgactaaattaatgagtttgctagtgtactggattta
agatcatctctacttaatcgttagctgaccactaaactgagtgaagtctc
agaatttgttcagaaacatcaccatagaagcaaacagtgactcaataata
acaaactctcgagaggagatcacatctgatttccatggttgccatattgc
accaggtaaatcatccggttttcaacaacaacaacaacaacattaacaat
ttgttaggcatgggaatgaaaagcatacaacctgttttcagagaatgaat
ttgaggaaactcagactccagattagttattacctcaatcttcaaagaag
gggaatcctgagaacaagcccggccacaggaagactctcaatacagggcc
agaagtcagaagggaggatcaaatagaagctgtagagttaaaaagaaatc
taacagcggctggggcagggaaagcctgcagcacaaaagagctgtagagt
tgggctgattacaacttatgaagtctgggggaagaaaagaatgaattaag
ataacagggagcaactagagacccgttgagacaccatcagcacacagcat
ggaatatatattgtatatacatacattcattacatacatacatacataca
tatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89971140_89972221
seq2: B6Ng01-189J22.b_46_1164

seq1  GAATTCTTTCACCATTAAAATGGCCTCCAACAATTGTATCTCTTGTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACCATTAAAATGGCCTCCAACAATTGTATCTCTTGTTACT  50

seq1  AACAAGAAAACCCTCACCATGGTTCATTAAACCCTTTTCAACAGGCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAACCCTCACCATGGTTCATTAAACCCTTTTCAACAGGCTTTT  100

seq1  AGCTCTTTTCACTAATGAAACATGGTTGTCCTCTTTGTCCTTGGGGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTTCACTAATGAAACATGGTTGTCCTCTTTGTCCTTGGGGGGTT  150

seq1  TAAATGCAGCCAGAGTAACGATCACTGTCAGGTTTGGGTGCCTGTAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAGCCAGAGTAACGATCACTGTCAGGTTTGGGTGCCTGTAGTCA  200

seq1  ATTTACACATCAATCCTGACTCTCTCCTTCAGGACCCCCTCCCCCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACATCAATCCTGACTCTCTCCTTCAGGACCCCCTCCCCCTCCAT  250

seq1  ACAAGTTGTGCTTGGCAACAAGATAGCTGAGGAGGAATCCAGTCTGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTGCTTGGCAACAAGATAGCTGAGGAGGAATCCAGTCTGTGTC  300

seq1  AGCACCATTCCACCAATTTCAGTCAAGGACATTTAGCCAAAAAGCAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATTCCACCAATTTCAGTCAAGGACATTTAGCCAAAAAGCAACTT  350

seq1  CTTCAAACTCTAACTGCAAACAGCAGATCAACTCCGTCCTGCCCTGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACTCTAACTGCAAACAGCAGATCAACTCCGTCCTGCCCTGCCCT  400

seq1  GGAAGTGAGGAGCTTGGATTTGGCTTCCATGACTCATAGTTCAGAGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGGAGCTTGGATTTGGCTTCCATGACTCATAGTTCAGAGTTTC  450

seq1  TACTTTTTTTCTTTTATTTATCCACTTGACATCCTGATCATCACCCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTCTTTTATTTATCCACTTGACATCCTGATCATCACCCCCAC  500

seq1  CCCCATCCCTCATCCTTCCTCTCCTCCAAGTTCCACCCTTACAAATCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCCTCATCCTTCCTCTCCTCCAAGTTCCACCCTTACAAATCCCT  550

seq1  CCTCCCGTTACACCCTCCTCTTCTTTTCAGAGAAGGGAAGCCCCCCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGTTACACCCTCCTCTTCTTTTCAGAGAAGGGAAGCCCCCCTTGG  600

seq1  GTACCACCCCACCCTGGGACATCCAGTCCAAGTAGGCCTTAAGTACATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACCCCACCCTGGGACATCCAGTCCAAGTAGGCCTTAAGTACATCC  650

seq1  TCTCTCACTGAGGCCCAACCAGGCAGCCCAGGTAGGGGAAGGGGATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTGAGGCCCAACCAGGCAGCCCAGGTAGGGGAAGGGGATACAA  700

seq1  AGGCAGGCAACAGAGTCAGAGGCAGCATCCCATCCGATTGTTAGGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAACAGAGTCAGAGGCAGCATCCCATCCGATTGTTAGGTGACT  750

seq1  GAAGGTTCAGAGTTC-TTTATTC-TTCTAGGATTCTATCTCCAGATCTAG  798
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  GAAGGTTCAGAGTTCTTTTATTCTTTCTAGGATTCTATCTCCAGATCTAG  800

seq1  GGGACAGAAGTTG-TTCCCCATAGTTCATTATGTCCTCACTGGTGACAGA  847
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAAGTTGTTTCCCCATAGTTCATTATGTCCTCACTGGTGACAGA  850

seq1  CCTGGGAAGTGGGCCTTAGAGATGAAT-AGCAATCTATTGTGAAC-TATA  895
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  CCTGGGAAGTGGGCCTTAGAGATGAATAAGCAATCTATTGTGAACTTATA  900

seq1  CTGT--CCACTG-CTACC--TAGAC-TCTATGAC-TACTTA--GCTGCTT  936
      ||||  |||||| |||||   |||| |||||||| ||||||   ||||||
seq2  CTGTTCCCACTGCCTACCCTAAGACTTCTATGACTTACTTAAGCCTGCTT  950

seq1  TCTTTT--GTCGAGA---CCCTTTGCGATCAC-TCTGGCCAGTGGTCAGT  980
      ||||||   ||||||   || ||||||||||| |||||||||||||||||
seq2  TCTTTTTGTTCGAGAACCCCTTTTGCGATCACTTCTGGCCAGTGGTCAGT  1000

seq1  GTGGCTTTAT-AAATACAG-TGC--TTAAAAATT-ATAT-AAAGCATTC-  1023
      |||||||||| |||||||| |||  ||||||||| |||| ||||||||| 
seq2  GTGGCTTTATAAAATACAGTTGCCTTTAAAAATTAATATAAAAGCATTCC  1050

seq1  -TTAAAA-TAGTTTT--GGGTCAGATCTGAT-CATAC--TTC-ACT--GG  1063
       |||||| |||||||  || ||  ||||||| |||||  ||| |||  | 
seq2  TTTAAAATTAGTTTTTGGGATCGAATCTGATCCATACCTTTCAACTTGGA  1100

seq1  TCATCCTCTGACTCTCTTT  1082
      ||||||||||||| |||||
seq2  TCATCCTCTGACTTTCTTT  1119