BAC Information

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BAC

Clone NameB6Ng01-190D04
Chromosome11 (Build37)
Map Location 25,432,321 - 25,583,399
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190D04.bB6Ng01-190D04.g
ACCGA014013GA014014
length1,1481,164
definitionB6Ng01-190D04.b B6Ng01-190D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,582,247 - 25,583,399)(25,432,321 - 25,433,507)
sequence
gaattcctttctggaaggcttggattcctttaatcagagttcatttgtcc
tacttgttttagatatggcggtcttatcattctttgagacatcgtggctg
atacagctgtgttctcttctcttagtagcacacctaacttgatgttcaca
agttttagccagatggtctccagtattctcacaagttccctgttcttata
tgtctttagctgcaaaatatgaaataaaaacacagatatggtgtctcaaa
caggagtgggttaataagctctgagtgtttgggtagacataaattatggg
ggagagagttatttttcaataataagtctgacttattgattccagggccc
tgctatccactttctctggggttcctaagataggctatacagagttgagc
ttgcctaacaagtgcagaattactctccactacaaaacaaaagatgccta
ttaatcataaatcgtagcagaagtagcaatgtttagtttgggatgaccaa
aggagaagagctcctggctgtccaaatcagaggagtgtttttatttgtgt
ttgtcaaggatgaacctatacgcaaactacaaaaggctgttgcctttttt
ctcagctctggcttcatggcatttcttcctaaagcagcatgagagagctg
attttcatttgcgaggcattagcatgatgttctaacacttgtaaatgaat
acagctcttgcctaatctgtcattttaatgccttatagattttatttcac
tcgatgttgtaccagattctcaataataataatcaacggctttgttgttc
tctggcagaaattaaatttcttcagtgagtgtgcaactaataaaagatgt
tgcttgaggaaacaaaaaataaatatgatgaatcataaaagttagtgggg
tggggggggacttgcctcctagatgaaagacaattatgaacctagtggtg
aattgtctgattctcgtcttgtcacagcttaataacctcagaacgtcttt
agccaccgtgcttatgtctgagtattagacgtgtggacttggtgttttcc
cagatttcatttggagcattagtatagaggtgagtactaaatagccattc
tcttgccagaattagttgcttacacttgcccagtatacagcttctcgc

gaattccaatttcaggtcatagccgttctgagattgcttaagaaggagat
gggaacaactcatcttattcatgtattcaaggaaccttctaaaatgtgca
aaacagaacagttttaaggagcaacgcatgcatcttatcttgacagagct
gttttattatgtgcactgttgtacactgacctaatatatggagcattttt
agctaatataccttgtagggaaccagcctttaatatgatggattttatgg
tatctcattagggtgtgtttatataacctgatattaaacacgtttttaga
ttcatgctccttattaaaactgtgagccacattgacttttagttggaata
gaaacctagtcatttttaccattaagatgggtgtctctgaagtcactgaa
gagtgcatctattacctagacaaacttgaacatgccaccttcaaagctcc
aattaggaagggtggttcctctgaagcccactgccctcaagggcttacca
tgttctacctgctctcatccataatgtagaatttttattttcataagaaa
attttctttgtgtttccagagtggaaaaaaaaacctgttactttcccacc
aacacttactttttattttaggaatcacctccaattaatattgacaaaca
ggccctagagtaatagacaccttcatggtgaacttccagggtcttcataa
tgaatgtcaccagacaaggtgatgtttctataaaagtggcagagagcaag
taattaaagagagaaagaaggagagagaaagaaaaaagaagaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaataacatttcaagctgt
gttaaacaaaataatggctttcatatgttgaagtctccgttttgtaaact
gatcctgtggggcacctcagaagccagccataaatcgtgtcccagggtat
tttgcaggagtctggggaaagatgacctagcagtactgtaaatagtttaa
atattggagtctgtctcagaagtgtaatgtgagaaagcagagatgtttct
ctctatgcagccagaagtgccctttgaagtgatccacattcagaccagat
ctttggaagagggctatctttgagagaaacagactgtgccttctacttat
acagcaagagctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25582247_25583399
seq2: B6Ng01-190D04.b_48_1195 (reverse)

seq1  GCGAGGAAGCTGTATACT-GGCAGTTGTAGGCAAACTAA-TCTGGCAAAG  48
      |||| ||||||||||||| ||||  |||| || |||||| |||||| |||
seq2  GCGA-GAAGCTGTATACTGGGCAAGTGTAAGC-AACTAATTCTGGC-AAG  47

seq1  AGAATGGCTATTTTAGTAACTCACCTCTTATACTAATGCTTCCAAATGAA  98
      |||||||||| |||||| ||||||||| ||||||||||| ||||||||||
seq2  AGAATGGCTA-TTTAGT-ACTCACCTC-TATACTAATGC-TCCAAATGAA  93

seq1  ATCTGGGAAAACACCAAGTCCACACGTCTAATACTCAGACATAAGCACGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAAAACACCAAGTCCACACGTCTAATACTCAGACATAAGCACGG  143

seq1  TGGCTAAAGACGTTCTGAGGGTTATTAAGCTGTTGACAAGACGAGAATCA  198
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TGGCTAAAGACGTTCTGA-GGTTATTAAGCTG-TGACAAGACGAGAATCA  191

seq1  GACAATTCACCACTAGGTTCATAATTGTCTTTCATCTAGGA-GCAAGT-C  246
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  GACAATTCACCACTAGGTTCATAATTGTCTTTCATCTAGGAGGCAAGTCC  241

seq1  CCCCCCACCCCACTAACTTTTATGATTCATCATATTTATTTTTTGTTTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCACTAACTTTTATGATTCATCATATTTATTTTTTGTTTCC  291

seq1  TCAAGCAACATCTTTTATTAGTTGCACACTCACTGAAGAAATTTAATTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAACATCTTTTATTAGTTGCACACTCACTGAAGAAATTTAATTTC  341

seq1  TGCCAGAGAACAACAAAGCCGTTGATTATTATTATTGAGAATCTGGTACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGAACAACAAAGCCGTTGATTATTATTATTGAGAATCTGGTACA  391

seq1  ACATCGAGTGAAATAAAATCTATAAGGCATTAAAATGACAGATTAGGCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGAGTGAAATAAAATCTATAAGGCATTAAAATGACAGATTAGGCAA  441

seq1  GAGCTGTATTCATTTACAAGTGTTAGAACATCATGCTAATGCCTCGCAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTATTCATTTACAAGTGTTAGAACATCATGCTAATGCCTCGCAAA  491

seq1  TGAAAATCAGCTCTCTCATGCTGCTTTAGGAAGAAATGCCATGAAGCCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCAGCTCTCTCATGCTGCTTTAGGAAGAAATGCCATGAAGCCAG  541

seq1  AGCTGAGAAAAAAGGCAACAGCCTTTTGTAGTTTGCGTATAGGTTCATCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAAAAAAGGCAACAGCCTTTTGTAGTTTGCGTATAGGTTCATCC  591

seq1  TTGACAAACACAAATAAAAACACTCCTCTGATTTGGACAGCCAGGAGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAACACAAATAAAAACACTCCTCTGATTTGGACAGCCAGGAGCTC  641

seq1  TTCTCCTTTGGTCATCCCAAACTAAACATTGCTACTTCTGCTACGATTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTGGTCATCCCAAACTAAACATTGCTACTTCTGCTACGATTTA  691

seq1  TGATTAATAGGCATCTTTTGTTTTGTAGTGGAGAGTAATTCTGCACTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATAGGCATCTTTTGTTTTGTAGTGGAGAGTAATTCTGCACTTGT  741

seq1  TAGGCAAGCTCAACTCTGTATAGCCTATCTTAGGAACCCCAGAGAAAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGCTCAACTCTGTATAGCCTATCTTAGGAACCCCAGAGAAAGTG  791

seq1  GATAGCAGGGCCCTGGAATCAATAAGTCAGACTTATTATTGAAAAATAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGGGCCCTGGAATCAATAAGTCAGACTTATTATTGAAAAATAAC  841

seq1  TCTCTCCCCCATAATTTATGTCTACCCAAACACTCAGAGCTTATTAACCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCCATAATTTATGTCTACCCAAACACTCAGAGCTTATTAACCC  891

seq1  ACTCCTGTTTGAGACACCATATCTGTGTTTTTATTTCATATTTTGCAGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTTTGAGACACCATATCTGTGTTTTTATTTCATATTTTGCAGCT  941

seq1  AAAGACATATAAGAACAGGGAACTTGTGAGAATACTGGAGACCATCTGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATATAAGAACAGGGAACTTGTGAGAATACTGGAGACCATCTGGC  991

seq1  TAAAACTTGTGAACATCAAGTTAGGTGTGCTACTAAGAGAAGAGAACACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTGTGAACATCAAGTTAGGTGTGCTACTAAGAGAAGAGAACACA  1041

seq1  GCTGTATCAGCCACGATGTCTCAAAGAATGATAAGACCGCCATATCTAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATCAGCCACGATGTCTCAAAGAATGATAAGACCGCCATATCTAAA  1091

seq1  ACAAGTAGGACAAATGAACTCTGATTAAAGGAATCCAAGCCTTCCAGAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGGACAAATGAACTCTGATTAAAGGAATCCAAGCCTTCCAGAAA  1141

seq1  GGAATTC  1153
      |||||||
seq2  GGAATTC  1148


seq1: chr11_25432321_25433507
seq2: B6Ng01-190D04.g_66_1229

seq1  GAATTCCAATTTCAGGTCATAGCCGTTCTGAGATTGCTTAAGAAGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTCAGGTCATAGCCGTTCTGAGATTGCTTAAGAAGGAGAT  50

seq1  GGGAACAACTCATCTTATTCATGTATTCAAGGAACCTTCTAAAATGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAACTCATCTTATTCATGTATTCAAGGAACCTTCTAAAATGTGCA  100

seq1  AAACAGAACAGTTTTAAGGAGCAACGCATGCATCTTATCTTGACAGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAGTTTTAAGGAGCAACGCATGCATCTTATCTTGACAGAGCT  150

seq1  GTTTTATTATGTGCACTGTTGTACACTGACCTAATATATGGAGCATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTATGTGCACTGTTGTACACTGACCTAATATATGGAGCATTTTT  200

seq1  AGCTAATATACCTTGTAGGGAACCAGCCTTTAATATGATGGATTTTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATATACCTTGTAGGGAACCAGCCTTTAATATGATGGATTTTATGG  250

seq1  TATCTCATTAGGGTGTGTTTATATAACCTGATATTAAACACGTTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATTAGGGTGTGTTTATATAACCTGATATTAAACACGTTTTTAGA  300

seq1  TTCATGCTCCTTATTAAAACTGTGAGCCACATTGACTTTTAGTTGGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTCCTTATTAAAACTGTGAGCCACATTGACTTTTAGTTGGAATA  350

seq1  GAAACCTAGTCATTTTTACCATTAAGATGGGTGTCTCTGAAGTCACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTAGTCATTTTTACCATTAAGATGGGTGTCTCTGAAGTCACTGAA  400

seq1  GAGTGCATCTATTACCTAGACAAACTTGAACATGCCACCTTCAAAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATCTATTACCTAGACAAACTTGAACATGCCACCTTCAAAGCTCC  450

seq1  AATTAGGAAGGGTGGTTCCTCTGAAGCCCACTGCCCTCAAGGGCTTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAAGGGTGGTTCCTCTGAAGCCCACTGCCCTCAAGGGCTTACCA  500

seq1  TGTTCTACCTGCTCTCATCCATAATGTAGAATTTTTATTTTCATAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACCTGCTCTCATCCATAATGTAGAATTTTTATTTTCATAAGAAA  550

seq1  ATTTTCTTTGTGTTTCCAGAGTGGAAAAAAAAACCTGTTACTTTCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTGTGTTTCCAGAGTGGAAAAAAAAACCTGTTACTTTCCCACC  600

seq1  AACACTTACTTTTTATTTTAGGAATCACCTCCAATTAATATTGACAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTACTTTTTATTTTAGGAATCACCTCCAATTAATATTGACAAACA  650

seq1  GGCCCTAGAGTAATAGACACCTTCATGGTGAACTTCCAGGGTCTTCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAGAGTAATAGACACCTTCATGGTGAACTTCCAGGGTCTTCATAA  700

seq1  TGAATGTCACCAGACAAGGTGATGTTTCTATAAAAGTGGCAGAGAGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCACCAGACAAGGTGATGTTTCTATAAAAGTGGCAGAGAGCAAG  750

seq1  TAATTAAAGAGAGAAAGAAGGAGAGAGAAAGAAAAAAAGAAAGAAGGAAG  800
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  TAATTAAAGAGAGAAAGAAGGAGAGAGAAAGAAAAAA--GAAGAAGGAAG  798

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAATAACATTTCAAGC  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG-AAATAACATTTCAAGC  847

seq1  TGTGTTAAACAAAATAATGGCTTTCATATGTTGAAGTCTCCGTTTTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAACAAAATAATGGCTTTCATATGTTGAAGTCTCCGTTTTGTAA  897

seq1  ACTGATCCTGTGGGGCACCTCAGAAGCCAGCCATAAATCGTGTCCCAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCCTGTGGGGCACCTCAGAAGCCAGCCATAAATCGTGTCCCAGGG  947

seq1  TATTTTGCAAGGAGTCTGGGGAAAAGATGACCTAGCAGTACTGTAAATAG  1000
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TATTTTGC-AGGAGTCTGGGG-AAAGATGACCTAGCAGTACTGTAAATAG  995

seq1  TTTAAATAATTGGAAGGTCTGTCTCAGAAGTGTAATGTGAGAAAGCAGAG  1050
      ||||||| ||||||  ||||||||||||||||||||||||||||||||||
seq2  TTTAAAT-ATTGGA--GTCTGTCTCAGAAGTGTAATGTGAGAAAGCAGAG  1042

seq1  GAATGTTTCTCTCTATTGCAGCCAG-AGTGCCCTTTGGAGGTGATCCACA  1099
        ||||||||||||| ||||||||| |||||||||| || ||||||||||
seq2  --ATGTTTCTCTCTA-TGCAGCCAGAAGTGCCCTTT-GAAGTGATCCACA  1088

seq1  TTCAGAACCCAGATCTTTGGAGGAAAGGGCTATCTTTGGAGAGAAACAAA  1149
      ||||||  |||||||||||||  | |||||||||||| |||||||||  |
seq2  TTCAGA--CCAGATCTTTGGA--AGAGGGCTATCTTT-GAGAGAAAC--A  1131

seq1  GACTGTGCCTTTTCTACTTATTACAGCAAAAGAGCTAA  1187
      |||||||||  ||||||||| ||||||  |||||||||
seq2  GACTGTGCC--TTCTACTTA-TACAGC--AAGAGCTAA  1164


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