BAC Information

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BAC

Clone NameB6Ng01-190E16
Chromosome11 (Build37)
Map Location 69,254,843 - 69,388,755
singlet/doubletdoublet
Overlap geneDnahc2, Efnb3, Wdr79, LOC100043030
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3
Downstream geneTrp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190E16.bB6Ng01-190E16.g
ACCGA014083GA014084
length8561,117
definitionB6Ng01-190E16.b B6Ng01-190E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,387,904 - 69,388,755)(69,254,843 - 69,255,970)
sequence
gaattcactatgtagaccagactgtcctcaaagatcctctcagatatcct
ctatacctgcttctggactgtccgcttctccccccccccttgagataagg
gctcatctgcagactgagcttgggctccgtgagtagctgaggatgacctt
agactcctcatcttcatgcttcaagtgctaggatcacaggcatgcactgc
tacgccctgctcgtaaacataggtggaaaaacccctttgtgtgcacgtga
tatgtgtgtgtgcgtgtgtgaattttgggacatgcagaggtcagaacaca
cttctgggtatgggtcactgctttccatgttgattgagacagggtctctc
gttcagtgctgcaggtgaggggattgtcttgtctctaccttgtgtcttgt
catagggctctgggattgcaggcaggagctgctgtgtctggcagaagcgg
gttgtagaattgtggagagagggagtgaacttggtggttagaggtggtaa
tgacaatctgctgaggacactgactgtgggagcaagtggcgggtgtaaac
tgaggggaatggctgcggttccaaggaagtaaatgcatgacatcatcagg
cccgaatgcagtgtgaatccacggcttcttctcagtcatccttcaagcca
ggtggttgttgttgttgttgttgttgtagtattgagagagggtttatctg
tgtaacagtcctggctgtcctgaaaactcattctgtagacctggttggcc
tggactctgaacccacagagaattacttacctctgccctcctgagtctgg
gattaaaaggcctgtgccaccacacctgggtgttgtttggcgggggctgt
ggtggt
gaattcaattcccaaagcctagaggatggaagggaagaaccaactcctgt
gacttgtcctttggcttctacattctctctgtctctgtctctgtcacaca
cacacacacacacacacacacacacacacacacacagagtaatttaaaaa
ggagaagaactgattcctaacacccacgacacctgctagggcagctcaca
actgtctagtactctggttccaggaaaatccgacacctctgccctctggg
tgctggcgtgtaccagtacaaaccccacacaaaacacggagtttgtttgt
ttgtttgtttgtttgtttgtgtgaagaagttcctgccaggcttcagggaa
ttacttgagaggctgacgtaagaaaatgacaagtccagtgactcaggact
gcagagtgggtttaaggccagcctgggcaatggaagggagaacctatgaa
aaatgtttactaagggctagagggctgggaacgcagctcatttggatgag
tgcttgcatagcatgcacagagctttgggtttgaccccagcatctataat
ctctgcgtttgggagttagaggcaggaggatcaggagagttcaaggtcat
ccttggttatacagcaaattcaaggctagcctgggctaaaggagactttg
cctcaataaaacaaaccaaaaccaaacaaccaaaaaccaagcaagcaggt
cacgtagcctggaggacagactatgtctaagatgacgcccccccccatcc
catatagcacaggtggagcacagcagtcctgagataccctagatacccag
aggtcccgggtgccattaagaggagcacgtaagtggtggagagacggaag
aaaaagagaagcagaaggacatgggctcatgaagagaagcagaactggag
acttgagggtagtgaggaacagcctcatgtgagtagccagtgatgccacc
tgggaccatggtggaggtcctggcctgtgtgccaccagtaggagctggat
ttgtagctctgcagtagaggggtatgtcaccacaaggctaggtggatatc
tggcctgggctgcataatggagaactgtgtaagctgtcccacctcctcct
gggcatcatgggaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69387904_69388755
seq2: B6Ng01-190E16.b_44_899 (reverse)

seq1  ACCACCACAGCCCCCGCC-AACAACACCCAGGTGTGGTGGCACAGGCC-T  48
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  ACCACCACAGCCCCCGCCAAACAACACCCAGGTGTGGTGGCACAGGCCTT  50

seq1  TTAATCCCAGACTCAGGA-GGCAGAGGTAAGTAATTCTCTGTGGGTTCAG  97
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAATCCCAGACTCAGGAGGGCAGAGGTAAGTAATTCTCTGTGGGTTCAG  100

seq1  AGTCCAGGCCAACCAGGTCTACAGAATGAG-TTTCAGGACAGCCAGGACT  146
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTCCAGGCCAACCAGGTCTACAGAATGAGTTTTCAGGACAGCCAGGACT  150

seq1  GTTACACAGATAAACCCTCTCTCAATACTACAACAACAACAACAACAACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAGATAAACCCTCTCTCAATACTACAACAACAACAACAACAACA  200

seq1  ACCACCTGGCTTGAAGGATGACTGAGAAGAAGCCGTGGATTCACACTGCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGGCTTGAAGGATGACTGAGAAGAAGCCGTGGATTCACACTGCA  250

seq1  TTCGGGCCTGATGATGTCATGCATTTACTTCCTTGGAACCGCAGCCATTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGCCTGATGATGTCATGCATTTACTTCCTTGGAACCGCAGCCATTC  300

seq1  CCCTCAGTTTACACCCGCCACTTGCTCCCACAGTCAGTGTCCTCAGCAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTTTACACCCGCCACTTGCTCCCACAGTCAGTGTCCTCAGCAGA  350

seq1  TTGTCATTACCACCTCTAACCACCAAGTTCACTCCCTCTCTCCACAATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTACCACCTCTAACCACCAAGTTCACTCCCTCTCTCCACAATTC  400

seq1  TACAACCCGCTTCTGCCAGACACAGCAGCTCCTGCCTGCAATCCCAGAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCCGCTTCTGCCAGACACAGCAGCTCCTGCCTGCAATCCCAGAGC  450

seq1  CCTATGACAAGACACAAGGTAGAGACAAGACAATCCCCTCACCTGCAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGACAAGACACAAGGTAGAGACAAGACAATCCCCTCACCTGCAGCA  500

seq1  CTGAACGAGAGACCCTGTCTCAATCAACATGGAAAGCAGTGACCCATACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGAGAGACCCTGTCTCAATCAACATGGAAAGCAGTGACCCATACC  550

seq1  CAGAAGTGTGTTCTGACCTCTGCATGTCCCAAAATTCACACACGCACACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGTGTTCTGACCTCTGCATGTCCCAAAATTCACACACGCACACA  600

seq1  CACATATCACGTGCACACAAAGGGGTTTTTCCACCTATGTTTACGAGCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCACGTGCACACAAAGGGGTTTTTCCACCTATGTTTACGAGCAG  650

seq1  GGCGTAGCAGTGCATGCCTGTGATCCTAGCACTTGAAGCATGAAGATGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTAGCAGTGCATGCCTGTGATCCTAGCACTTGAAGCATGAAGATGAG  700

seq1  GAGTCTAAGGTCATCCTCAGCTACTCACGGAGCCCAAGCTCAGTCTGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAAGGTCATCCTCAGCTACTCACGGAGCCCAAGCTCAGTCTGCAG  750

seq1  ATGAGCCCTTATCTCAAGGGGGGGGGGAGAAGCGGACAGTCCAGAAGCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCTTATCTCAAGGGGGGGGGGAGAAGCGGACAGTCCAGAAGCAG  800

seq1  GTATAGAGGATATCTGAGAGGATCTTTGAGGACAGTCTGGTCTACATAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAGGATATCTGAGAGGATCTTTGAGGACAGTCTGGTCTACATAGT  850

seq1  GAATTC  852
      ||||||
seq2  GAATTC  856

seq1: chr11_69254843_69255970
seq2: B6Ng01-190E16.g_66_1182

seq1  GAATTCAATTCCCAAAGCCTAGAGGATGGAAGGGAAGAACCAACTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAAAGCCTAGAGGATGGAAGGGAAGAACCAACTCCTGT  50

seq1  GACTTGTCCTTTGGCTTCTACATTCTCTCTGTCTCTGTCTCTGTCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCCTTTGGCTTCTACATTCTCTCTGTCTCTGTCTCTGTCACACA  100

seq1  CACACACACACACACACACACACACACACACACACAGAGTAATTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAGAGTAATTTAAAAA  150

seq1  GGAGAAGAACTGATTCCTAACACCCACGACACCTGCTAGGGCAGCTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAACTGATTCCTAACACCCACGACACCTGCTAGGGCAGCTCACA  200

seq1  ACTGTCTAGTACTCTGGTTCCAGGAAAATCCGACACCTCTGCCCTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTAGTACTCTGGTTCCAGGAAAATCCGACACCTCTGCCCTCTGGG  250

seq1  TGCTGGCGTGTACCAGTACAAACCCCACACAAAACACGGAGTTTGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCGTGTACCAGTACAAACCCCACACAAAACACGGAGTTTGTTTGT  300

seq1  TTGTTTGTTTGTTTGTTTGTGTGAAGAAGTTCCTGCCAGGCTTCAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGTGTGAAGAAGTTCCTGCCAGGCTTCAGGGAA  350

seq1  TTACTTGAGAGGCTGACGTAAGAAAATGACAAGTCCAGTGACTCAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGAGAGGCTGACGTAAGAAAATGACAAGTCCAGTGACTCAGGACT  400

seq1  GCAGAGTGGGTTTAAGGCCAGCCTGGGCAATGGAAGGGAGAACCTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGGGTTTAAGGCCAGCCTGGGCAATGGAAGGGAGAACCTATGAA  450

seq1  AAATGTTTACTAAGGGCTAGAGGGCTGGGAACGCAGCTCATTTGGATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTACTAAGGGCTAGAGGGCTGGGAACGCAGCTCATTTGGATGAG  500

seq1  TGCTTGCATAGCATGCACAGAGCTTTGGGTTTGACCCCAGCATCTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATAGCATGCACAGAGCTTTGGGTTTGACCCCAGCATCTATAAT  550

seq1  CTCTGCGTTTGGGAGTTAGAGGCAGGAGGATCAGGAGAGTTCAAGGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCGTTTGGGAGTTAGAGGCAGGAGGATCAGGAGAGTTCAAGGTCAT  600

seq1  CCTTGGTTATACAGCAAATTCAAGGCTAGCCTGGGCTAAAGGAGACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTATACAGCAAATTCAAGGCTAGCCTGGGCTAAAGGAGACTTTG  650

seq1  CCTCAATAAAACAAACCAAAACCAAACAACCAAAAACCAAGCAAGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATAAAACAAACCAAAACCAAACAACCAAAAACCAAGCAAGCAGGT  700

seq1  CACGTAGCCTGGAGGACAGACTATGTCTAAGATGACGCCCCCCCCCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAGCCTGGAGGACAGACTATGTCTAAGATGACGCCCCCCCCCATCC  750

seq1  CATATAGCACAGGTGGAGCACAGCAGTCCTGAGATACCCTAGATACCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCACAGGTGGAGCACAGCAGTCCTGAGATACCCTAGATACCCAG  800

seq1  AGGTCCCGGGTGCCATTAAGAGGAGCACGTAAGTGGTGGAGAGACGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCGGGTGCCATTAAGAGGAGCACGTAAGTGGTGGAGAGACGGAAG  850

seq1  AAAAAGAGAAGCAGAAGGACATGGGCTCATGAAGAGAAGCAGAACTGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAAGCAGAAGGACATGGGCTCATGAAGAGAAGCAGAACTGGAG  900

seq1  ACTTGAGGGTAGTGAGGAACAGCCTCATGTGAGTAGCCAGTGATGCCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGGTAGTGAGGAACAGCCTCATGTGAGTAGCCAGTGATGCCACC  950

seq1  TGGGACCATGGT-GAGGTCCTGGCCTGTGTTGCCACCAAGTTAAGAGCTG  999
      |||||||||||| |||||||||||||||| ||||||||   || ||||||
seq2  TGGGACCATGGTGGAGGTCCTGGCCTGTG-TGCCACCA--GTAGGAGCTG  997

seq1  GATTTGTAGCTCTGCAGTAGAGGGGTTATGTCACCACCAAAGGCTAGGTG  1049
      ||||||||||||||||||||||||| |||||||||||  |||||||||||
seq2  GATTTGTAGCTCTGCAGTAGAGGGG-TATGTCACCAC--AAGGCTAGGTG  1044

seq1  GATATTCCTGGGCTGGGCTGCCATATATGAGAACTGTGTAGAGCTGTCCC  1099
      |||||  |||| |||||||| ||||   |||||||||||| |||||| ||
seq2  GATAT--CTGGCCTGGGCTG-CATAATGGAGAACTGTGTA-AGCTGT-CC  1089

seq1  CACCCTCTCCTGGGCATCATGGGAGAGCT  1128
      ||||  |||||||||||||||||| ||||
seq2  CACCTCCTCCTGGGCATCATGGGA-AGCT  1117