BAC Information

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BAC

Clone NameB6Ng01-190H02
Chromosome12 (Build37)11 (Build37)
Map Location 106,869,624 - 106,870,79056,785,540 - 56,785,627
singlet/doubletsingletsinglet
Overlap gene2410024A21Rik
Upstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1
Downstream gene4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190H02.bB6Ng01-190H02.g
ACCGA014196GA014197
length1,16093
definitionB6Ng01-190H02.b B6Ng01-190H02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,869,624 - 106,870,790)(56,785,540 - 56,785,627)
sequence
gaattctgtgactctctaagcctgactgtactgttaatctgctgccacag
aacctcagctaggcataaatgttttacagtcaaagtttaacactgaatat
agaacctaagtcttagtgtttaaatgactgtgctgaggcattcttagata
acaaagcatgcagctgttaggtctgcagtggggcttgacatactcttaca
gcggagtgactgctccatcggctgaaatgccctatcttctctccccatct
tgaaatagccattcttctttccatcacctcagttgttgtcatcctggctg
tgctctgtatgagttaaggaagtatgtttgcttcttcctctggactgtgt
ctgtgaggttcaggtgtcacaggttgtcactctacatgggccccagctta
ctccctgctgatttgcacttatttttagtgctcataaataagaccattgt
gaaatttgtttataagtgtttgtggacatgtttttcatttcttttgggta
acttgaatgtgtatctatttttacacatgtatacatacttgtagtatgta
tatgtacatctaaaagtacataaaagtttctatgtctttgtttggagttc
cttgatggctgctgatgtttagccttttcacatccttattagccattgct
ctatcttcttttgtgaggtattgtgatttgctgtttttatagtgggatgt
aaataataaaaagagcatcataaaatgccagggtttcttgtgtcttcctc
ttcaagaacaactctatatctaatactttcttttttttgaacagtgttat
agttaagacagttacaaaattcaactgtcaccatctagtggtagttaaag
aacagcattttatactgttaacatgtaatgctgagtatgatacatacatg
taataagcatgtacagggtaaatagtatgtgcttgttcctagcatgacat
aataatgaaccctctgtgaacctgctccttgcctcagaaccagggtgttc
catattggtggacctatctcagacctctggcacatatacctataatatgt
catctgtgtcattaatataatgtaatgggaatggcaaggtactagttctt
gcaatagtgggttcagaactttttcgggtgtatcgacatgatgcgctgta
gcttacggta
tcctttaatcatctcatgtggtgtgtgtgtttgcatgtgtgcgtgcgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106869624_106870790
seq2: B6Ng01-190H02.b_32_1191 (reverse)

seq1  TACCGTGAGCTACAGGGCCACGATGTCGATACACACCGAAAAAG-TCTG-  48
      |||||| |||||||| | ||  |||||||||||| ||||||||| |||| 
seq2  TACCGTAAGCTACAGCG-CATCATGTCGATACAC-CCGAAAAAGTTCTGA  48

seq1  ACCCACTATTTCCAAGAACTTAGTTACTTGCCATTCCATTTACATTATAT  98
      |||||||| || ||||||| ||||  |||||||||||  |||||||||||
seq2  ACCCACTA-TTGCAAGAAC-TAGTACCTTGCCATTCCCATTACATTATAT  96

seq1  TTAAATGACACAGATGACAATATTATAGGTAATATGGTGCCCAGAGGTCT  148
      |  ||||||||||||||| ||||||||||| |||| ||| ||||||||||
seq2  T--AATGACACAGATGAC-ATATTATAGGT-ATAT-GTG-CCAGAGGTCT  140

seq1  GAGATAGGTCCACCAATATGGAACAACCTGGTTCTGAGGCAAGGAGCAGG  198
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGATAGGTCCACCAATATGGAACACCCTGGTTCTGAGGCAAGGAGCAGG  190

seq1  TTCACAGAGGGTTCATTATTATGTCATGCTAGGAACAAGCACATACTATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGGGTTCATTATTATGTCATGCTAGGAACAAGCACATACTATT  240

seq1  TACCCTGTACATGCTTATTACATGTATGTATCATACTCAGCATTACATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTACATGCTTATTACATGTATGTATCATACTCAGCATTACATGT  290

seq1  TAACAGTATAAAATGCTGTTCTTTAACTACCACTAGATGGTGACAGTTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTATAAAATGCTGTTCTTTAACTACCACTAGATGGTGACAGTTGA  340

seq1  ATTTTGTAACTGTCTTAACTATAACACTGTTC-AAAAAAAGAAAGTATTA  397
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTTGTAACTGTCTTAACTATAACACTGTTCAAAAAAAAGAAAGTATTA  390

seq1  GATATAGAGTTGTTCTTGAAGAGGAAGACACAAGAAACCCTGGCATTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAGTTGTTCTTGAAGAGGAAGACACAAGAAACCCTGGCATTTTA  440

seq1  TGATGCTCTTTTTATTATTTACATCCCACTATAAAAACAGCAAATCACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCTTTTTATTATTTACATCCCACTATAAAAACAGCAAATCACAA  490

seq1  TACCTCACAAAAGAAGATAGAGCAATGGCTAATAAGGATGTGAAAAGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACAAAAGAAGATAGAGCAATGGCTAATAAGGATGTGAAAAGGCT  540

seq1  AAACATCAGCAGCCATCAAGGAACTCCAAACAAAGACATAGAAACTTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAGCAGCCATCAAGGAACTCCAAACAAAGACATAGAAACTTTTA  590

seq1  TGTACTTTTAGATGTACATATACATACTACAAGTATGTATACATGTGTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTAGATGTACATATACATACTACAAGTATGTATACATGTGTAA  640

seq1  AAATAGATACACATTCAAGTTACCCAAAAGAAATGAAAAACATGTCCACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATACACATTCAAGTTACCCAAAAGAAATGAAAAACATGTCCACA  690

seq1  AACACTTATAAACAAATTTCACAATGGTCTTATTTATGAGCACTAAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTATAAACAAATTTCACAATGGTCTTATTTATGAGCACTAAAAAT  740

seq1  AAGTGCAAATCAGCAGGGAGTAAGCTGGGGCCCATGTAGAGTGACAACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAATCAGCAGGGAGTAAGCTGGGGCCCATGTAGAGTGACAACCT  790

seq1  GTGACACCTGAACCTCACAGACACAGTCCAGAGGAAGAAGCAAACATACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCTGAACCTCACAGACACAGTCCAGAGGAAGAAGCAAACATACT  840

seq1  TCCTTAACTCATACAGAGCACAGCCAGGATGACAACAACTGAGGTGATGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACTCATACAGAGCACAGCCAGGATGACAACAACTGAGGTGATGG  890

seq1  AAAGAAGAATGGCTATTTCAAGATGGGGAGAGAAGATAGGGCATTTCAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAATGGCTATTTCAAGATGGGGAGAGAAGATAGGGCATTTCAGC  940

seq1  CGATGGAGCAGTCACTCCGCTGTAAGAGTATGTCAAGCCCCACTGCAGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGAGCAGTCACTCCGCTGTAAGAGTATGTCAAGCCCCACTGCAGAC  990

seq1  CTAACAGCTGCATGCTTTGTTATCTAAGAATGCCTCAGCACAGTCATTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGCTGCATGCTTTGTTATCTAAGAATGCCTCAGCACAGTCATTTA  1040

seq1  AACACTAAGACTTAGGTTCTATATTCAGTGTTAAACTTTGACTGTAAAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAGACTTAGGTTCTATATTCAGTGTTAAACTTTGACTGTAAAAC  1090

seq1  ATTTATGCCTAGCTGAGGTTCTGTGGCAGCAGATTAACAGTACAGTCAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCCTAGCTGAGGTTCTGTGGCAGCAGATTAACAGTACAGTCAGG  1140

seq1  CTTAGAGAGTCACAGAATTC  1167
      ||||||||||||||||||||
seq2  CTTAGAGAGTCACAGAATTC  1160

seq1: chr11_56785540_56785627
seq2: B6Ng01-190H02.g_83_159 (reverse)

seq1  CACACACACACACGCACACACACACACACACACACACACACACACACACA  50
              ||||| ||||||||||||||||||||||||||||||||||||
seq2  --------CACACACACACACACACACACACACACACACACACACACACA  42

seq1  CACACGCACACACGCACACACGCACACACACACA-CACA  88
      ||||||    |||||||||| ||| ||||||||| ||||
seq2  CACACG----CACGCACACATGCAAACACACACACCACA  77