BAC Information

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BAC

Clone NameB6Ng01-191B18
Chromosome11 (Build37)
Map Location 96,573,863 - 96,684,302
singlet/doubletdoublet
Overlap geneSkap1, Snx11, Cbx1, LOC629750, Nfe2l1
Upstream gene1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Downstream geneCopz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191B18.bB6Ng01-191B18.g
ACCGA014693GA014694
length1,036962
definitionB6Ng01-191B18.b B6Ng01-191B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,683,286 - 96,684,302)(96,573,863 - 96,574,828)
sequence
gaattctgtcaggggtcatgaggtgaggctgggcctttaatagttgtgga
tgttcaagcttactccagctgtgagccaatgaagggggaatgactgtaga
agggctgaagacagcctgtcgttgtcattggttgcatcaggtggttggaa
atgcagggattttcctctctaggctaccccacccctttatgcaaatgcag
tggcaccacaggctgatgcaagtctggtcactgctaagcaattccacagg
gcagtttgcccttgcttgccatggtcagacagtctgtgttttcagagtct
ccaaatcttaaaaggagaggggtctcttgcttcctcctctgtctttttag
aggtgatacagccctgacctttagcttgggtgtgactctggcccacagtc
taaacctgaaagcctgtgtgatgctagacacattagtagtttttagcaat
gcctcttattttggtggaaggttgcctgggaatgaatgatgccttgctgg
tgcagagggagcaggaaaggagggctaaaaggcacaggcctgagtatgac
cccacccaggactcattggagcgtcagtaggtgggacctgtgaaggggta
ggaccgggagctttctccctgggatgggggactacttgaaagctaaagtc
atcttggtctgtctttcaggatatagatctgattgacatcctttggcgac
aggatattgatctgggggctgggcgtgaggtttttgactacagtcatcgc
cagaaggagcagatgtggataaggaactgcaagatgggacgagaacgaga
ggacacctggtcaggcgagggtgcggaagctcttggcccgagacctgcta
gtagatggagagactgggggagagctttccctgcacaggttactgcctcc
ttaactgtctcccgaaactgtcgctgctcctccctgctcctacagacttc
accatgctggaacactttccagaacaacttgctctggaatcagaggttgt
tgctctttagcagtggaaccctgattgtggttttgg
gaattccacagtgagaccaccgggaaatgaacgtctgagagctcagactc
cgccatattgcctgggctctgtcaccctggccaacttggagccatcgctc
accgatccggttttctgcttggcgagcagagcataggacacaggcaatgc
ctcgcctggcctattttcttcctttcaccttgcgtttccgttcccatacc
catacttttctgggctgcttcatcctgaccacgttttattgccagggagg
atttatgttggtgggttaaacctgatgcagtgacgggctggccttttctg
tagatttcctgccactgaggcccgcattagaaataacagcccttaaccta
gtgtttcattttctcctgacatgttttattctcatccctcctcctctctc
acctcctcctttcctatacttctttttttttctatctttattcattctta
tctttgctcccgctgcagatcttagctccttaaccattcccttcgaagag
gaggaggaggaagaggaggaagaagagaaagaagaggaagaaatgtacaa
tgacgtcgatggctttgactccccaaggtctggctcccagtgcagagcca
tggccttgcctgagcctactgagaaagaggaggacatttatgaagtccta
ccaggtaagatacatcaccggctaactacccacctcctgctgctcagaaa
aacaacaacaaaaacaaaaaactcttgacatgcgaaagaacgaaacagcc
cccaaagttatccctattcaaggttcactgtctgaaagagatggtgtaaa
agcccggtgactctgccttgttctgggaacaagatgaattcttctatcag
cggtaccacgtgacgtgacgtcacttgttcttgagctatgaggttaaagg
ctagagaccacctccctcctgtttctcattgctagctgtgagttggggtg
cgttctctaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96683286_96684302
seq2: B6Ng01-191B18.b_44_1079 (reverse)

seq1  CCAAAA-CACAATCAGG--TCCACTGC-AAAGA--CACAA-CTCTGA-TC  42
      |||||| ||||||||||  |||||||| |||||   |||| |||||| ||
seq2  CCAAAACCACAATCAGGGTTCCACTGCTAAAGAGCAACAACCTCTGATTC  50

seq1  CAGAGCAAG-TGTTCTGG-AAGTGTTCCAGCATGGTG-AGTCTG-GGGAG  88
      ||||||||| |||||||| |||||||||||||||||| ||||||  ||||
seq2  CAGAGCAAGTTGTTCTGGAAAGTGTTCCAGCATGGTGAAGTCTGTAGGAG  100

seq1  CAGGGA-GAGCAGCGACCAGTGTC-GGAGACAG-TAAGG-GGCAGT-ACC  133
      |||||| ||||||||| |||| || |||||||| ||||| |||||| |||
seq2  CAGGGAGGAGCAGCGA-CAGTTTCGGGAGACAGTTAAGGAGGCAGTAACC  149

seq1  TGTGCAGGG-AAGCTCT-CCCCAGTCTCTCCATCTACTAGCAGGTCTCGG  181
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGAAAGCTCTCCCCCAGTCTCTCCATCTACTAGCAGGTCTCGG  199

seq1  GCC-AGAGCTTCCGCACCCTCGCCTGACCAGGTGTCCTCTCGTTCTCGT-  229
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCAAGAGCTTCCGCACCCTCGCCTGACCAGGTGTCCTCTCGTTCTCGTC  249

seq1  CCATCTTGCAGTTCCTTATCCACATCCTGCTCCTTCTGGCGATGACTGTA  279
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCATCTTGCAGTTCCTTATCCACAT-CTGCTCCTTCTGGCGATGACTGTA  298

seq1  GTCAAAAACCTCACGCCCAGCCCCCAGATCAATATCCTGTCGCCAAAGGA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAACCTCACGCCCAGCCCCCAGATCAATATCCTGTCGCCAAAGGA  348

seq1  TGTCAATCAGATCTATATCCTGAAAGACAGACCAAGATGACTTTAGCTTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCAGATCTATATCCTGAAAGACAGACCAAGATGACTTTAGCTTT  398

seq1  CAAGTAGTCCCCCATCCCAGGGAGAAAGCTCCCGGTCCTACCCCTTCACA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTCCCCCATCCCAGGGAGAAAGCTCCCGGTCCTACCCCTTCACA  448

seq1  GGTCCCACCTACTGACGCTCCAATGAGTCCTGGGTGGGGTCATACTCAGG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCACCTACTGACGCTCCAATGAGTCCTGGGTGGGGTCATACTCAGG  498

seq1  CCTGTGCCTTTTAGCCCTCCTTTCCTGCTCCCTCTGCACCAGCAAGGCAT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCTTTTAGCCCTCCTTTCCTGCTCCCTCTGCACCAGCAAGGCAT  548

seq1  CATTCATTCCCAGGCAACCTTCCACCAAAATAAGAGGCATTGCTAAAAAC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCCCAGGCAACCTTCCACCAAAATAAGAGGCATTGCTAAAAAC  598

seq1  TACTAATGTGTCTAGCATCACACAGGCTTTCAGGTTTAGACTGTGGGCCA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGTGTCTAGCATCACACAGGCTTTCAGGTTTAGACTGTGGGCCA  648

seq1  GAGTCACACCCAAGCTAAAGGTCAGGGCTGTATCACCTCTAAAAAGACAG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACACCCAAGCTAAAGGTCAGGGCTGTATCACCTCTAAAAAGACAG  698

seq1  AGGAGGAAGCAAGAGACCCCTCTCCTTTTAAGATTTGGAGACTCTGAAAA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGCAAGAGACCCCTCTCCTTTTAAGATTTGGAGACTCTGAAAA  748

seq1  CACAGACTGTCTGACCATGGCAAGCAAGGGCAAACTGCCCTGTGGAATTG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGTCTGACCATGGCAAGCAAGGGCAAACTGCCCTGTGGAATTG  798

seq1  CTTAGCAGTGACCAGACTTGCATCAGCCTGTGGTGCCACTGCATTTGCAT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGTGACCAGACTTGCATCAGCCTGTGGTGCCACTGCATTTGCAT  848

seq1  AAAGGGGTGGGGTAGCCTAGAGAGGAAAATCCCTGCATTTCCAACCACCT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTGGGGTAGCCTAGAGAGGAAAATCCCTGCATTTCCAACCACCT  898

seq1  GATGCAACCAATGACAACGACAGGCTGTCTTCAGCCCTTCTACAGTCATT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAACCAATGACAACGACAGGCTGTCTTCAGCCCTTCTACAGTCATT  948

seq1  CCCCCTTCATTGGCTCACAGCTGGAGTAAGCTTGAACATCCACAACTATT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCATTGGCTCACAGCTGGAGTAAGCTTGAACATCCACAACTATT  998

seq1  AAAGGCCCAGCCTCACCTCATGACCCCTGACAGAATTC  1017
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCAGCCTCACCTCATGACCCCTGACAGAATTC  1036

seq1: chr11_96573863_96574828
seq2: B6Ng01-191B18.g_63_1024

seq1  GAATTCCACAGTGAGACCACCGGGAAATGAACGTCTGAGAGCTCAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTGAGACCACCGGGAAATGAACGTCTGAGAGCTCAGACTC  50

seq1  CGCCATATTGCCTGGGCTCTGTCACCCTGGCCAACTTGGAGCCATCGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATATTGCCTGGGCTCTGTCACCCTGGCCAACTTGGAGCCATCGCTC  100

seq1  ACCGATCCGGTTTTCTGCTTGGCGAGCAGAGCATAGGACACAGGCAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATCCGGTTTTCTGCTTGGCGAGCAGAGCATAGGACACAGGCAATGC  150

seq1  CTCGCCTGGCCTATTTTCTTCCTTTCACCTTGCGTTTCCGTTCCCATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCTGGCCTATTTTCTTCCTTTCACCTTGCGTTTCCGTTCCCATACC  200

seq1  CATACTTTTCTGGGCTGCTTCATCCTGACCACGTTTTATTGCCAGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTTCTGGGCTGCTTCATCCTGACCACGTTTTATTGCCAGGGAGG  250

seq1  ATTTATGTTGGTGGGTTAAACCTGATGCAGTGACGGGCTGGCCTTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTGGTGGGTTAAACCTGATGCAGTGACGGGCTGGCCTTTTCTG  300

seq1  TAGATTTCCTGCCACTGAGGCCCGCATTAGAAATAACAGCCCTTAACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCCTGCCACTGAGGCCCGCATTAGAAATAACAGCCCTTAACCTA  350

seq1  GTGTTTCATTTTCTCCTGACATGTTTTATTCTCATCCCTCCTCCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCATTTTCTCCTGACATGTTTTATTCTCATCCCTCCTCCTCTCTC  400

seq1  ACCTCCTCCTTTCCTATACTTCTTTTTTTTTCTATCTTTATTCATTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCCTTTCCTATACTTCTTTTTTTTTCTATCTTTATTCATTCTTA  450

seq1  TCTTTGCTCCCGCTGCAGATCTTAGCTCCTTAACCATTCCCTTCGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTCCCGCTGCAGATCTTAGCTCCTTAACCATTCCCTTCGAAGAG  500

seq1  GAGGAGGAGGAAGAGGAGGAAGAAGAGAAAGAAGAGGAAGAAATGTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGGAAGAGGAGGAAGAAGAGAAAGAAGAGGAAGAAATGTACAA  550

seq1  TGACGTCGATGGCTTTGACTCCCCAAGGTCTGGCTCCCAGTGCAGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCGATGGCTTTGACTCCCCAAGGTCTGGCTCCCAGTGCAGAGCCA  600

seq1  TGGCCTTGCCTGAGCCTACTGAGAAAGAGGAGGACATTTATGAAGTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGCCTGAGCCTACTGAGAAAGAGGAGGACATTTATGAAGTCCTA  650

seq1  CCAGGTAAGATACATCACCGGCTAACTACCCACCTCCTGCTGCTCAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAGATACATCACCGGCTAACTACCCACCTCCTGCTGCTCAGAAA  700

seq1  AACAACAACAAAAACAAAAAACTCTTGACATGCGAAAGAACGAAACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAAACAAAAAACTCTTGACATGCGAAAGAACGAAACAGCC  750

seq1  CCCAAAGTTATCCCTATTCAAGGTTCACTGTCTGAAGGAGATGGTGTAAA  800
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  CCCAAAGTTATCCCTATTCAAGGTTCACTGTCTGAAAGAGATGGTGT-AA  799

seq1  AAGCCCGGTGACTCTGCCTTGTTCTGGGAACAAGATGAAATCCTCTTTCA  850
      ||||||||||||||||||||||||||||||||||||||| || ||| |||
seq2  AAGCCCGGTGACTCTGCCTTGTTCTGGGAACAAGATGAATTCTTCTATCA  849

seq1  GCGGTACCACGTGACGTGACGTCACTTGTTCTTGAGCCATGAAGGTTAAA  900
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  GCGGTACCACGTGACGTGACGTCACTTGTTCTTGAGCTATG-AGGTTAAA  898

seq1  GGCTAGAGACCA-CTCCCT-CTGTTTCTCATTGGCTAGCTGTGAGTTTGG  948
      |||||||||||| |||||| |||||||||||| ||||||||||||||  |
seq2  GGCTAGAGACCACCTCCCTCCTGTTTCTCATT-GCTAGCTGTGAGTT--G  945

seq1  GGGTGCGTTCTCATAACT  966
      |||||||||||| |||||
seq2  GGGTGCGTTCTC-TAACT  962