BAC Information

Click to search

BAC

Clone NameB6Ng01-191E10
Chromosome11 (Build37)
Map Location 78,251,807 - 78,415,859
singlet/doubletdoublet
Overlap geneSlc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570
Upstream geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2
Downstream geneLOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191E10.bB6Ng01-191E10.g
ACCGA014811GA014812
length1,1891,160
definitionB6Ng01-191E10.b B6Ng01-191E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,414,659 - 78,415,859)(78,251,807 - 78,252,993)
sequence
gaattccaggacagccaatgctacacacagagaaatcttgtcttgaaaaa
caaaacaaaataaaaacaataacaaaaagagtcccttttgttctttcaga
ggactcaggcttaatttgcactatctacttagtggcttataactataagt
aacccaggtcccaggggatctgacaccctcttctggcccctggccaccaa
gcatgaatgtagtacacaaataatacatgtgggcaaaatatatttacaca
tgaaaaataaaataattaaaaaataagaataaaaagtgtactgcaaggcc
aaaagtaagaagattgtgagtgaacagtcaggagtgggcaggtgtgtaac
cttagaagatcatgagtgagtagtcaggagtgggcacgtgtataagctca
gccggaggaaggctgagacaggccagcctgctcatagggtgagacctctc
ttcctaaagaatgaattgttctttcctccttcagcaatgatgctcttttg
agattgcctggtctttcattttgaaatcccactggctcaaaagaactatg
tagaacagttgtcaattttctttttacttatattcttccccttcacctat
agtctttttcccactgaaccttgacacacctggtagaaggaaagagggaa
gaataggaacacagtcgtacatttttttcaaacagtcctgagttcatatt
ttaatcccctgcccagcttgctaacttctgaccttgagaaggttacttga
tggcactccttactggtggatgaattatgtatgtccaacatctggcacag
ctcctggtactaagacttaataaactctacccttcctcctccttgtaagg
atgataatgatggctgccacctcattcctttcccctttgtgccagacact
gtgtgattctcaacacagttgcttaaatcctggcaagaacctcatcatgc
ctattttataagcacaggaaagttacataacttgcctattgttacccagc
tggtaaatgacagagtcaagattgtaaccctgatcatttgggatctgcat
cacagcactttccaccagctagtctgttcagcttctcattttcaaaatca
gttttgagcctttttccctctgaagtgtagtattttgttcttaagtgtca
tgtggatgctcattttacaaacaggtaatggtttgaaaa
gaattcatttatgagtactggcattagtgcaggatggattcacgtgcatg
ttagataacacttgcatctactcgtgtgtattctagtggctgggaggggt
tgacaagtactctgtgaagactcactgtatcaagggagaaggaaaaaata
aaacgattctgatagcttgtcagtggctgataaggcaggttaccagtggc
cccagcttccctagtcttagcgttgaaagtcctgaatgctggactaacct
ggatagctgatcattgtatgggcctggctaccagtatctttactgtcatg
ctcttttgatgactgtgacagagtcgaagtgactctgtgactacaatata
tcaaagccaacacaaggacaccatgcaactgaaagtcattaagcatcttc
cctctgagctagcacaaatgactaatgccctttgaccaaggacaactgca
ggccagctttgatccttctgcttgctagataagaatagtcaagatgatca
gccatcagcttgttcttgcttcttcatgatgctcaacccagaatggactt
gaatccctgagtacttaccaaagtcacccagcacagtctcatgcctgtac
tgaaatttctggaattttggtttcatttaaaaacatagaaatagggctgg
tgagatggctcagcaggtaagaacaccgtctgctctcctgaaggtcctga
gttcaaatcccagcaaattggtggctcacaaccatctgtaatgagatctg
acgccctcttctggtgcatctgaagacagctacagtgtacttattacata
ataataattaaatctttgggccagaacaagcagggctgaccggagtgagc
agagatcctaaaattcaatttccaagcaaccacatgaaaggctcacaacc
atctgtacagctacaatgtattcatatacataaaataaataaataaataa
attattttttaaaaccatagaaataaaccaggcatggttgcacatgccct
ttatcctagcctttgtgagacagagcatgtgaatgcaaggtcagcttatc
taaagagtgagttcaggggaaaactctgtatcaaacaaacaagcattaac
atcaagaagttataaaatgtgctatcaatcagttagataggctactcgaa
tgtctgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78414659_78415859
seq2: B6Ng01-191E10.b_45_1233 (reverse)

seq1  TTTTC-AACTATACCCTGTTTGTTAAAAAATGAAGCAAACCCACATGACA  49
      ||||| ||| ||  |||||||||   |||||| |||  | ||||||||| 
seq2  TTTTCAAACCATTACCTGTTTGT---AAAATG-AGC--ATCCACATGAC-  43

seq1  AACTAAGAACAAAATAATTACACTTCAGAAGGGAAAAAGGCTTCAAAACT  99
      |  |||||||||||| | |||||||||| |||||||||||| ||||||||
seq2  ACTTAAGAACAAAAT-ACTACACTTCAG-AGGGAAAAAGGC-TCAAAACT  90

seq1  GATTTTTGAAAATGAGAAGCTGAACAGACTTAGCTGGTGGGAAGGTGCTG  149
      || |||||||||||||||||||||||||| |||||||| |||| ||||||
seq2  GA-TTTTGAAAATGAGAAGCTGAACAGAC-TAGCTGGT-GGAAAGTGCTG  137

seq1  TGATGCAGATCCCAAATGATCAGGGTTACAATCTTGACTCTGTCATTTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGATCCCAAATGATCAGGGTTACAATCTTGACTCTGTCATTTAC  187

seq1  CAGCTTGGTAACATTAGGCAAGTTATGTAACTTTCCTGTGCTTATAAAAT  249
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGTAACAATAGGCAAGTTATGTAACTTTCCTGTGCTTATAAAAT  237

seq1  AGGCATGATGAGGTTCTTGCCAGGATTTAAGCAACTGTGTTGAGAATCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGATGAGGTTCTTGCCAGGATTTAAGCAACTGTGTTGAGAATCAC  287

seq1  ACAGTGTCTGGCACAAAGGGGAAAGGAATGAGGTGGCAGCCATCATTATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCTGGCACAAAGGGGAAAGGAATGAGGTGGCAGCCATCATTATC  337

seq1  ATCCTTACAAGGAGGAGGAAGGGTAGAGTTTATTAAGTCTTAGTACCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTACAAGGAGGAGGAAGGGTAGAGTTTATTAAGTCTTAGTACCAGG  387

seq1  AGCTGTGCCAGATGTTGGACATACATAATTCATCCACCAGTAAGGAGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCCAGATGTTGGACATACATAATTCATCCACCAGTAAGGAGTGC  437

seq1  CATCAAGTAACCTTCTCAAGGTCAGAAGTTAGCAAGCTGGGCAGGGGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTAACCTTCTCAAGGTCAGAAGTTAGCAAGCTGGGCAGGGGATT  487

seq1  AAAATATGAACTCAGGACTGTTTGAAAAAAATGTACGACTGTGTTCCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAACTCAGGACTGTTTGAAAAAAATGTACGACTGTGTTCCTAT  537

seq1  TCTTCCCTCTTTCCTTCTACCAGGTGTGTCAAGGTTCAGTGGGAAAAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCTTTCCTTCTACCAGGTGTGTCAAGGTTCAGTGGGAAAAAGA  587

seq1  CTATAGGTGAAGGGGAAGAATATAAGTAAAAAGAAAATTGACAACTGTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGTGAAGGGGAAGAATATAAGTAAAAAGAAAATTGACAACTGTTC  637

seq1  TACATAGTTCTTTTGAGCCAGTGGGATTTCAAAATGAAAGACCAGGCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTTCTTTTGAGCCAGTGGGATTTCAAAATGAAAGACCAGGCAAT  687

seq1  CTCAAAAGAGCATCATTGCTGAAGGAGGAAAGAACAATTCATTCTTTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGAGCATCATTGCTGAAGGAGGAAAGAACAATTCATTCTTTAGG  737

seq1  AAGAGAGGTCTCACCCTATGAGCAGGCTGGCCTGTCTCAGCCTTCCTCCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGTCTCACCCTATGAGCAGGCTGGCCTGTCTCAGCCTTCCTCCG  787

seq1  GCTGAGCTTATACACGTGCCCACTCCTGACTACTCACTCATGATCTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTTATACACGTGCCCACTCCTGACTACTCACTCATGATCTTCTA  837

seq1  AGGTTACACACCTGCCCACTCCTGACTGTTCACTCACAATCTTCTTACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACACACCTGCCCACTCCTGACTGTTCACTCACAATCTTCTTACTT  887

seq1  TTGGCCTTGCAGTACACTTTTTATTCTTATTTTTTAATTATTTTATTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGCAGTACACTTTTTATTCTTATTTTTTAATTATTTTATTTTT  937

seq1  CATGTGTAAATATATTTTGCCCACATGTATTATTTGTGTACTACATTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAAATATATTTTGCCCACATGTATTATTTGTGTACTACATTCAT  987

seq1  GCTTGGTGGCCAGGGGCCAGAAGAGGGTGTCAGATCCCCTGGGACCTGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGGCCAGGGGCCAGAAGAGGGTGTCAGATCCCCTGGGACCTGGG  1037

seq1  TTACTTATAGTTATAAGCCACTAAGTAGATAGTGCAAATTAAGCCTGAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATAGTTATAAGCCACTAAGTAGATAGTGCAAATTAAGCCTGAGT  1087

seq1  CCTCTGAAAGAACAAAAGGGACTCTTTTTGTTATTGTTTTTATTTTGTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAAGAACAAAAGGGACTCTTTTTGTTATTGTTTTTATTTTGTTT  1137

seq1  TGTTTTTCAAGACAAGATTTCTCTGTGTGTAGCATTGGCTGTCCTGGAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAAGACAAGATTTCTCTGTGTGTAGCATTGGCTGTCCTGGAAT  1187

seq1  TC  1201
      ||
seq2  TC  1189

seq1: chr11_78251807_78252993
seq2: B6Ng01-191E10.g_67_1226

seq1  GAATTCATTTATGAGTACTGGCATTAGTGCAGGATGGATTCACGTGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATGAGTACTGGCATTAGTGCAGGATGGATTCACGTGCATG  50

seq1  TTAGATAACACTTGCATCTACTCGTGTGTATTCTAGTGGCTGGGAGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAACACTTGCATCTACTCGTGTGTATTCTAGTGGCTGGGAGGGGT  100

seq1  TGACAAGTACTCTGTGAAGACTCACTGTATCAAGGGAGAAGGAAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTACTCTGTGAAGACTCACTGTATCAAGGGAGAAGGAAAAAATA  150

seq1  AAACGATTCTGATAGCTTGTCAGTGGCTGATAAGGCAGGTTACCAGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATTCTGATAGCTTGTCAGTGGCTGATAAGGCAGGTTACCAGTGGC  200

seq1  CCCAGCTTCCCTAGTCTTAGCGTTGAAAGTCCTGAATGCTGGACTAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTCCCTAGTCTTAGCGTTGAAAGTCCTGAATGCTGGACTAACCT  250

seq1  GGATAGCTGATCATTGTATGGGCCTGGCTACCAGTATCTTTACTGTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTGATCATTGTATGGGCCTGGCTACCAGTATCTTTACTGTCATG  300

seq1  CTCTTTTGATGACTGTGACAGAGTCGAAGTGACTCTGTGACTACAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGATGACTGTGACAGAGTCGAAGTGACTCTGTGACTACAATATA  350

seq1  TCAAAGCCAACACAAGGACACCATGCAACTGAAAGTCATTAAGCATCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCAACACAAGGACACCATGCAACTGAAAGTCATTAAGCATCTTC  400

seq1  CCTCTGAGCTAGCACAAATGACTAATGCCCTTTGACCAAGGACAACTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGCTAGCACAAATGACTAATGCCCTTTGACCAAGGACAACTGCA  450

seq1  GGCCAGCTTTGATCCTTCTGCTTGCTAGATAAGAATAGTCAAGATGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTTTGATCCTTCTGCTTGCTAGATAAGAATAGTCAAGATGATCA  500

seq1  GCCATCAGCTTGTTCTTGCTTCTTCATGATGCTCAACCCAGAATGGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAGCTTGTTCTTGCTTCTTCATGATGCTCAACCCAGAATGGACTT  550

seq1  GAATCCCTGAGTACTTACCAAAGTCACCCAGCACAGTCTCATGCCTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTGAGTACTTACCAAAGTCACCCAGCACAGTCTCATGCCTGTAC  600

seq1  TGAAATTTCTGGAATTTTGGTTTCATTTAAAAACATAGAAATAGGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCTGGAATTTTGGTTTCATTTAAAAACATAGAAATAGGGCTGG  650

seq1  TGAGATGGCTCAGCAGGTAAGAACACCGTCTGCTCTCCTGAAGGTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGCTCAGCAGGTAAGAACACCGTCTGCTCTCCTGAAGGTCCTGA  700

seq1  GTTCAAATCCCAGCAAATTGGTGGCTCACAACCATCTGTAATGAGATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATCCCAGCAAATTGGTGGCTCACAACCATCTGTAATGAGATCTG  750

seq1  ACGCCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTTATTACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTTATTACATA  800

seq1  ATAATAATTAAATCTTTGGGCCAGAACAAGCAGGGCTGACCGGAGTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTAAATCTTTGGGCCAGAACAAGCAGGGCTGACCGGAGTGAGC  850

seq1  AGAGATCCTAAAATTCAA-TTCCAAGCAACCACATG-AAGGCTCACAACC  898
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  AGAGATCCTAAAATTCAATTTCCAAGCAACCACATGAAAGGCTCACAACC  900

seq1  ATCTGTACAGCTACAATGTATTCATATACATAAAATAAATAAATAAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACAGCTACAATGTATTCATATACATAAAATAAATAAATAAATAA  950

seq1  A-TATTTTTAAAAACCATAGAAATAAACCAGGCATGGTTGCACATGCCTT  997
      | ||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  ATTATTTTTTAAAACCATAGAAATAAACCAGGCATGGTTGCACATGCCCT  1000

seq1  TAATCCTAGCC-TTGTGAGACAGAGCATTGTGAATGCAGGGTCAGCTTAT  1046
      | ||||||||| ||||||||||||||| |||||||||| |||||||||| 
seq2  TTATCCTAGCCTTTGTGAGACAGAGCA-TGTGAATGCAAGGTCAGCTTA-  1048

seq1  TCTACAGAGTGAGTTTCAGGGGGAAAAACCCTGTATCAAAAAACAAAACA  1096
      |||| |||||||| ||||||||  ||||| |||||||   |||||||   
seq2  TCTAAAGAGTGAG-TTCAGGGG--AAAACTCTGTATC---AAACAAA--C  1090

seq1  AAGCAATAACAAACCCACAGAAATGTTATAAAAATGTGCTTTATTTTAAT  1146
      ||||| |||||    || ||||  ||||| |||||||||    | | |||
seq2  AAGCATTAACA---TCA-AGAA--GTTAT-AAAATGTGC----TATCAAT  1129

seq1  CCCAGTTGTAAGGATATAGGGCTACTCGGATTGTCTGAAGC  1187
        |||||      | ||| |||||||| || ||||||||||
seq2  --CAGTT------AGATA-GGCTACTC-GAATGTCTGAAGC  1160