BAC Information

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BAC

Clone NameB6Ng01-191K23
Chromosome11 (Build37)
Map Location 39,993,404 - 40,119,412
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191K23.bB6Ng01-191K23.g
ACCGA015115GA015116
length1,0601,203
definitionB6Ng01-191K23.b B6Ng01-191K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,118,349 - 40,119,412)(39,993,404 - 39,994,607)
sequence
gaattcagcatccattcactgaggcagacataacgctgaacccgactatg
attaggaagttgagtacctcagcagcttatatggggacaaaggttatagc
tgatgggtaaatgcccctaggagctattgactagtgttgccttcagaatt
caggattgtgatttgctagaaatagttttcttatcctttgcaagaggata
gtaaatcactttctggatctttctcatttataagttccaatcttctgcct
aagtgtttctcaacacccatgtgaaagtgacaaattgagcaactgttctc
agatggcaatgagattgtggtagaaaaatcactggtctaggagttagaag
actttttgtacattccttcgttctatcttttttggtgactttgggaaact
catttggggaattctgacctttcacgttaatgtttcctagaaggtattgt
gtgatcaagagagaagatgttaagttggttaaagaattatttctaaagaa
tatataatgctagataaatataggtgttactcctgtgttataatgattat
tcttttacctatgggtagttatgcacagatcatgtctttggagagatacg
ggtactagtgttgttgttggagggagaaataaataatatactaaataaaa
agatttaaacctttctatagtggaatttactatgcatgtaactaactatt
ctgtattgtttagtattttatgaactgtgtatactgttttgttttagaaa
tgtgattttctagtggatgttcatagtagaaaggacacacaataaaaaat
gattttgaggtggggctttagagatggctcagctgttaagagaactttat
agtctttttagagaacctgaattcagttcccagctcccgactgtctgtaa
taccaccgtcagagtgtgctcttttctggacttaacggacattttatcac
atgtgcacatgtctttttctcacagaaatacctaacctaatttacttatt
tttgatatatgttttatcacaatattttctctccctttcaaactttctca
tgtactgctt

gaattccagaggttgttttgttaccaagttcaaatttcataactataggt
agccactaaactcacctatctaattttattaatttatgcaatctataaaa
acaaatactttaaaaagtattaaacataattgaaggcaaattatgttcat
atttaatttgtttcaataaaaatgtttattatcatgttatacccactaac
tttttaaataaaaaatattaaatttaaaccatctatcaagttttaacata
tcttgaaattttataaggtcaacctgaaaacttgcctcatagggctggct
cacatggcgaagacatagatatggaataaatgacatctatttcataacca
ggcaacaactctttgatctttgattggttgtcactgttttgatgactagc
tggcttgccatctttggggactcttaatgatgagggatgacctatggatc
tctggaactgctgcttatgtgccagctcttcttcatttcttagtccaaaa
tcaaagcagaacgttccaatgatgacgccattctcttcttcacttaaact
gaatgaggttattctggaaatttcaagaaaacatgatatagaaaagagcc
aagaaatcctaacagtgacaagttctaaagcactggacatgtattagcta
gcttctttagctataaaaaaggcaaagttacatgagagaaatcaagagat
ttatttacttggtttagtatttccaaaagtttaatatgttagggagaatg
tgacagaaagacagcaggaaacagaatgagtgtgtctgctctagctggct
ttcctttatttccccatcattttgtccattcaagttcccagtctctggga
tgctgctgcccacattctggacagttttccccttcttagttaatgatccc
tggcaatgcctacacagacacactcataggaatgctctcataatcactca
attcagtccactccaacgacacggacaaagctaattaaccttcacagggt
gaatgaccacagatgagccagcccagcagaagcccaagacatcatggagt
caacgaggcttccaccacagtctgtctgaactactgatactcaaaccatg
gagcacagtaaacatcatgttgtactggattaaatgattttggcataggc
catgatcacaactatagagagaaccctcacaattgaaacttggatttttt
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40118349_40119412
seq2: B6Ng01-191K23.b_48_1107 (reverse)

seq1  AAGCAGTACATGAGAAAGTTTGAAAGGGAAGGAGAAAATATTGTGATTAA  50
      |||||||||||||||||||||||||||||  ||||||||||||||| |||
seq2  AAGCAGTACATGAGAAAGTTTGAAAGGGA--GAGAAAATATTGTGA-TAA  47

seq1  AACATAATATCAAAAATAAGTAAATTAGGTTAGGTATTTCTGTGAAGAAA  100
      ||||| |||||||||||||||||||||||||||||||||||||||  |||
seq2  AACAT-ATATCAAAAATAAGTAAATTAGGTTAGGTATTTCTGTGAGAAAA  96

seq1  AGACATGTGCACATGTGATAAAATGTCCGTTAAGTCCAGAAAAGAGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTGCACATGTGATAAAATGTCCGTTAAGTCCAGAAAAGAGCACA  146

seq1  CTCTGACGGTGGTATTACAGACAGTCGGGAGCTGGGAACTGAATTCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACGGTGGTATTACAGACAGTCGGGAGCTGGGAACTGAATTCAGGT  196

seq1  TCTCTAAAAAGACTATAAAGTTCTCTTAACAGCTGAGCCATCTCTAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAAAGACTATAAAGTTCTCTTAACAGCTGAGCCATCTCTAAAGC  246

seq1  CCCACCTCAAAATCATTTTTTATTGTGTGTCCTTTCTACTATGAACATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCAAAATCATTTTTTATTGTGTGTCCTTTCTACTATGAACATCC  296

seq1  ACTAGAAAATCACATTTCTAAAACAAAACAGTATACACAGTTCATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAATCACATTTCTAAAACAAAACAGTATACACAGTTCATAAAAT  346

seq1  ACTAAACAATACAGAATAGTTAGTTACATGCATAGTAAATTCCACTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAATACAGAATAGTTAGTTACATGCATAGTAAATTCCACTATAG  396

seq1  AAAGGTTTAAATCTTTTTATTTAGTATATTATTTATTTCTCCCTCCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTAAATCTTTTTATTTAGTATATTATTTATTTCTCCCTCCAACA  446

seq1  ACAACACTAGTACCCGTATCTCTCCAAAGACATGATCTGTGCATAACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTAGTACCCGTATCTCTCCAAAGACATGATCTGTGCATAACTAC  496

seq1  CCATAGGTAAAAGAATAATCATTATAACACAGGAGTAACACCTATATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTAAAAGAATAATCATTATAACACAGGAGTAACACCTATATTTA  546

seq1  TCTAGCATTATATATTCTTTAGAAATAATTCTTTAACCAACTTAACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATTATATATTCTTTAGAAATAATTCTTTAACCAACTTAACATCT  596

seq1  TCTCTCTTGATCACACAATACCTTCTAGGAAACATTAACGTGAAAGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGATCACACAATACCTTCTAGGAAACATTAACGTGAAAGGTCA  646

seq1  GAATTCCCCAAATGAGTTTCCCAAAGTCACCAAAAAAGATAGAACGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAATGAGTTTCCCAAAGTCACCAAAAAAGATAGAACGAAGG  696

seq1  AATGTACAAAAAGTCTTCTAACTCCTAGACCAGTGATTTTTCTACCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAAAAAGTCTTCTAACTCCTAGACCAGTGATTTTTCTACCACAA  746

seq1  TCTCATTGCCATCTGAGAACAGTTGCTCAATTTGTCACTTTCACATGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGCCATCTGAGAACAGTTGCTCAATTTGTCACTTTCACATGGGT  796

seq1  GTTGAGAAACACTTAGGCAGAAGATTGGAACTTATAAATGAGAAAGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAACACTTAGGCAGAAGATTGGAACTTATAAATGAGAAAGATCC  846

seq1  AGAAAGTGATTTACTATCCTCTTGCAAAGGATAAGAAAACTATTTCTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGATTTACTATCCTCTTGCAAAGGATAAGAAAACTATTTCTAGC  896

seq1  AAATCACAATCCTGAATTCTGAAGGCAACACTAGTCAATAGCTCCTAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAATCCTGAATTCTGAAGGCAACACTAGTCAATAGCTCCTAGGG  946

seq1  GCATTTACCCATCAGCTATAACCTTTGTCCCCATATAAGCTGCTGAGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACCCATCAGCTATAACCTTTGTCCCCATATAAGCTGCTGAGGTA  996

seq1  CTCAACTTCCTAATCATAGTCGGGTTCAGCGTTATGTCTGCCTCAGTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTCCTAATCATAGTCGGGTTCAGCGTTATGTCTGCCTCAGTGAA  1046

seq1  TGGATGCTGAATTC  1064
      ||||||||||||||
seq2  TGGATGCTGAATTC  1060


seq1: chr11_39993404_39994607
seq2: B6Ng01-191K23.g_65_1267

seq1  GAATTCCAGAGGTTGTTTTGTTACCAAGTTCAAATTTCATAACTATAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGTTGTTTTGTTACCAAGTTCAAATTTCATAACTATAGGT  50

seq1  AGCCACTAAACTCACCTATCTAATTTTATTAATTTATGCAATCTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTAAACTCACCTATCTAATTTTATTAATTTATGCAATCTATAAAA  100

seq1  ACAAATACTTTAAAAAGTATTAAACATAATTGAAGGCAAATTATGTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACTTTAAAAAGTATTAAACATAATTGAAGGCAAATTATGTTCAT  150

seq1  ATTTAATTTGTTTCAATAAAAATGTTTATTATCATGTTATACCCACTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTGTTTCAATAAAAATGTTTATTATCATGTTATACCCACTAAC  200

seq1  TTTTTAAATAAAAAATATTAAATTTAAACCATCTATCAAGTTTTAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATAAAAAATATTAAATTTAAACCATCTATCAAGTTTTAACATA  250

seq1  TCTTGAAATTTTATAAGGTCAACCTGAAAACTTGCCTCATAGGGCTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAATTTTATAAGGTCAACCTGAAAACTTGCCTCATAGGGCTGGCT  300

seq1  CACATGGCGAAGACATAGATATGGAATAAATGACATCTATTTCATAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCGAAGACATAGATATGGAATAAATGACATCTATTTCATAACCA  350

seq1  GGCAACAACTCTTTGATCTTTGATTGGTTGTCACTGTTTTGATGACTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAACTCTTTGATCTTTGATTGGTTGTCACTGTTTTGATGACTAGC  400

seq1  TGGCTTGCCATCTTTGGGGACTCTTAATGATGAGGGATGACCTATGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCCATCTTTGGGGACTCTTAATGATGAGGGATGACCTATGGATC  450

seq1  TCTGGAACTGCTGCTTATGTGCCAGCTCTTCTTCATTTCTTAGTCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACTGCTGCTTATGTGCCAGCTCTTCTTCATTTCTTAGTCCAAAA  500

seq1  TCAAAGCAGAACGTTCCAATGATGACGCCATTCTCTTCTTCACTTAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAGAACGTTCCAATGATGACGCCATTCTCTTCTTCACTTAAACT  550

seq1  GAATGAGGTTATTCTGGAAATTTCAAGAAAACATGATATAGAAAAGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGTTATTCTGGAAATTTCAAGAAAACATGATATAGAAAAGAGCC  600

seq1  AAGAAATCCTAACAGTGACAAGTTCTAAAGCACTGGACATGTATTAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCCTAACAGTGACAAGTTCTAAAGCACTGGACATGTATTAGCTA  650

seq1  GCTTCTTTAGCTATAAAAAAGGCAAAGTTACATGAGAGAAATCAAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTAGCTATAAAAAAGGCAAAGTTACATGAGAGAAATCAAGAGAT  700

seq1  TTATTTACTTGGTTTAGTATTTCCAAAAGTTTAATATGTTAGGGAGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTTGGTTTAGTATTTCCAAAAGTTTAATATGTTAGGGAGAATG  750

seq1  TGACAGAAAGACAGCAGGAAACAGAATGAGTGTGTCTGCTCTAGCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAAGACAGCAGGAAACAGAATGAGTGTGTCTGCTCTAGCTGGCT  800

seq1  TTCCTTTATTTCCCCATCATTTTGTCCATTCAAGTTCCCAGTCTCTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATTTCCCCATCATTTTGTCCATTCAAGTTCCCAGTCTCTGGGA  850

seq1  TGCTGCTGCCCACATTCTGGACAGTTTTCCCCTTCTTAGTTAATGATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGCCCACATTCTGGACAGTTTTCCCCTTCTTAGTTAATGATCCC  900

seq1  TGGCAATGCCTACACAGACACACTCATAGGAATGCTCTCATAATCACCTC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGCAATGCCTACACAGACACACTCATAGGAATGCTCTCATAATCA-CTC  949

seq1  AATTCAGTCCACTCCAACGACACGGACAAAGCTAATTAACCTTCACAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTCCACTCCAACGACACGGACAAAGCTAATTAACCTTCACAGGG  999

seq1  TGAATGACCACAGATGAGCCAGCCCAGCAGAAGCCCAAGACATCATGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACCACAGATGAGCCAGCCCAGCAGAAGCCCAAGACATCATGGAG  1049

seq1  TCAACGAGGC-TCCACCACAGTCTGTCTGAACTACTGATACTCAAACCCA  1099
      |||||||||| |||||||||||||||||||||||||||||||||||||  
seq2  TCAACGAGGCTTCCACCACAGTCTGTCTGAACTACTGATACTCAAACCAT  1099

seq1  TGAGCACAGTAAACAATCAATGTTTGTACTGAATTAAAATGATTTTTGCA  1149
       ||||||||||||| ||| ||| |||||||| ||| |||||||||| |||
seq2  GGAGCACAGTAAAC-ATC-ATG-TTGTACTGGATT-AAATGATTTTGGCA  1145

seq1  TA-GCCATAGATCACAACTATA-AGAGAACCCTCAC-ATTGAAACTTTG-  1195
      || ||||| ||||||||||||| ||||||||||||| |||||||||| | 
seq2  TAGGCCAT-GATCACAACTATAGAGAGAACCCTCACAATTGAAACTTGGA  1194

seq1  TTTTTTATG  1204
      |||||||||
seq2  TTTTTTATG  1203


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