BAC Information

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BAC

Clone NameB6Ng01-193E09
Chromosome11 (Build37)
Map Location 13,796,875 - 13,946,281
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193E09.bB6Ng01-193E09.g
ACCGA016293GA016294
length1,085946
definitionB6Ng01-193E09.b B6Ng01-193E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,945,209 - 13,946,281)(13,796,875 - 13,797,882)
sequence
gaattcttcagcacagaggtcttccttcagctctgcatggactgtagtgt
tctttaagtgccaagctatatggagaaaatcatattcatacctagtaaat
gattttcttgttgctatgactcagagctgataggaaatatcttaaaagag
atgatgggagtttggtggcttgtagtctgagggaacaggatttgtggtga
tggggaaattatggcaacagaaggaaactggatattttgcatttaccgac
tggaagtacagataaagcagggagttggttcatgcaataaaacctcaggc
ttcatattctgtgtaccacttttccagtaaggctcagccaattatagttt
ctacaggtttccagaataatgcaaccctttggaaatgaagcgttttaaca
tgagatcccaccagaagcatttcacattcaacacataataatagagcaag
tggacataacatatattaatagagaatcagactatagtatgaactaaagg
aaactatggaaaaatattttcctacatcccaataaagacaagaacaggga
acttcccttcagaaaaagggaaggaaagtaaataataatcaattacctaa
aacattaagacaacaacaacaacaacacacacacacaatctatatctagt
gaaatgtcctttaaaggtaagtaaatatgaaaattttctcaaaatgaaaa
aatttactgtcagtacacagtaatattatattgaataatcattgcatatg
aatgactgtagtacttgaaatcattgcaataaataacacaaggcaataag
aacacctataaagtttctatgctgcatggcaccaataaaatgatatttga
aagaactcagatgatacagaacatatcattgggaattctgagaactcact
aacctctcatgaagaaaaggaaaaagtcattataaaaactcaatacagca
ggacagtgtagaaaacgaaaaaaaaaatgagtaaagtataaaaataaaat
gtttatgaatattgcctaatacaagtattttgattactgagtaatttatt
ggattgtagaggaggtaggctaaactttagatatc
gaattccaggacagccagggctagctacacagagaaaccctgtgtcaaaa
aagaaagaaaggaagaaagaaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagcctgtctgtgaatgtttgtgtgtgtgtatgtgtgtgc
acacatgcatctgtggatataatagaataaattcttttcatacatgtatt
aagtttctccaaaagcatcagcatcgctacaactgagtggattctgtttc
tttttatggctgaattgtagttcttcttgataatcaatccattgtacttt
tggacacctttgaaaacttagttgcttatattttctcttcctcttagatt
tttcattattttgttgttaagaagacagctatagatgaataaacgtagaa
ggcaactacttctttaatatgagaacaccttccatcaatggtatagaatt
cagtaacttcaccatgttacatgagtatcagtggctaacagtataatgct
atcataagatataacaacaatcaatagcaataggtacatctgaacagtaa
tactcaagaacaagatcattaatcaatagtcttggcagcaaatatcctaa
taaacagagcagactagtccttagttgattctataagtccttcctaagtg
gcacagttgagatgtgagaatagatgtgtatagatagctacagatttagt
aaatcctattgtatcattcgtatgacgacatgttacttgatcatgttttg
ggtacagtcatcatgatggaagtcatggtcatgagtcaccggcatctcgc
ttgcagagcatggagcttatgagctgctgttcagctgcatctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13945209_13946281
seq2: B6Ng01-193E09.b_48_1132 (reverse)

seq1  GATATCTAAAGTTTAG-CTAC--TCTCTACCAT-CAATAAATTACTCAGT  46
      |||||||||||||||| ||||   |||||| || ||||||||||||||||
seq2  GATATCTAAAGTTTAGCCTACCTCCTCTACAATCCAATAAATTACTCAGT  50

seq1  AATC-AAATAC-TGTA-TAG--CATATTCATAAACATTTTA-TTTTATAC  90
      |||| |||||| |||| |||   |||||||||||||||||| ||||||||
seq2  AATCAAAATACTTGTATTAGGCAATATTCATAAACATTTTATTTTTATAC  100

seq1  CTTACTCA-TTTTTTTTTCCTTTTCTACACTGT-CTGCTTGTATTTGAGT  138
       ||||||| |||||||||| ||||||||||||| |||| |||| ||||||
seq2  TTTACTCATTTTTTTTTTCGTTTTCTACACTGTCCTGC-TGTA-TTGAGT  148

seq1  TTTTAT-ATGACTTTTTCCTTTTCTTCATGAGAGGTTAGTGAGTTCTCAG  187
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATGACTTTTTCCTTTTCTTCATGAGAGGTTAGTGAGTTCTCAG  198

seq1  AATT-CCAATGATATGTTCTGTATCATCTGAGTTCTTTCAAATATCATTT  236
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAATGATATGTTCTGTATCATCTGAGTTCTTTCAAATATCATTT  248

seq1  TATTGGTGCCATGCAGCATAGAAACTTTATAGGTGTTCTTATTGCCTTGT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGCCATGCAGCATAGAAACTTTATAGGTGTTCTTATTGCCTTGT  298

seq1  GTTATTTATTGCAATGATTTCAAGTACTACAGTCATTCATATGCAATGAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTATTGCAATGATTTCAAGTACTACAGTCATTCATATGCAATGAT  348

seq1  TATTCAATATAATATTACTGTGTACTGACAGTAAATTTTTTCATTTTGAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATATAATATTACTGTGTACTGACAGTAAATTTTTTCATTTTGAG  398

seq1  AAAATTTTCATATTTACTTACCTTTAAAGGACATTTCACTAGATATAGAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTCATATTTACTTACCTTTAAAGGACATTTCACTAGATATAGAT  448

seq1  TGTGTGTGTGTGTTGTTGTTGTTGTTGTCTTAATGTTTTAGGTAATTGAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTGTTGTTGTTGTTGTCTTAATGTTTTAGGTAATTGAT  498

seq1  TATTATTTACTTTCCTTCCCTTTTTCTGAAGGGAAGTTCCCTGTTCTTGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTACTTTCCTTCCCTTTTTCTGAAGGGAAGTTCCCTGTTCTTGT  548

seq1  CTTTATTGGGATGTAGGAAAATATTTTTCCATAGTTTCCTTTAGTTCATA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGGGATGTAGGAAAATATTTTTCCATAGTTTCCTTTAGTTCATA  598

seq1  CTATAGTCTGATTCTCTATTAATATATGTTATGTCCACTTGCTCTATTAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCTGATTCTCTATTAATATATGTTATGTCCACTTGCTCTATTAT  648

seq1  TATGTGTTGAATGTGAAATGCTTCTGGTGGGATCTCATGTTAAAACGCTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTGAATGTGAAATGCTTCTGGTGGGATCTCATGTTAAAACGCTT  698

seq1  CATTTCCAAAGGGTTGCATTATTCTGGAAACCTGTAGAAACTATAATTGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAAAGGGTTGCATTATTCTGGAAACCTGTAGAAACTATAATTGG  748

seq1  CTGAGCCTTACTGGAAAAGTGGTACACAGAATATGAAGCCTGAGGTTTTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTTACTGGAAAAGTGGTACACAGAATATGAAGCCTGAGGTTTTA  798

seq1  TTGCATGAACCAACTCCCTGCTTTATCTGTACTTCCAGTCGGTAAATGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGAACCAACTCCCTGCTTTATCTGTACTTCCAGTCGGTAAATGCA  848

seq1  AAATATCCAGTTTCCTTCTGTTGCCATAATTTCCCCATCACCACAAATCC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCAGTTTCCTTCTGTTGCCATAATTTCCCCATCACCACAAATCC  898

seq1  TGTTCCCTCAGACTACAAGCCACCAAACTCCCATCATCTCTTTTAAGATA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTCAGACTACAAGCCACCAAACTCCCATCATCTCTTTTAAGATA  948

seq1  TTTCCTATCAGCTCTGAGTCATAGCAACAAGAAAATCATTTACTAGGTAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATCAGCTCTGAGTCATAGCAACAAGAAAATCATTTACTAGGTAT  998

seq1  GAATATGATTTTCTCCATATAGCTTGGCACTTAAAGAACACTACAGTCCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGATTTTCTCCATATAGCTTGGCACTTAAAGAACACTACAGTCCA  1048

seq1  TGCAGAGCTGAAGGAAGACCTCTGTGCTGAAGAATTC  1073
      |||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCTGAAGGAAGACCTCTGTGCTGAAGAATTC  1085

seq1: chr11_13796875_13797882
seq2: B6Ng01-193E09.g_62_1007

seq1  GAATTCCAGGACAGCCAGGGCTAGCTACACAGAGAAACCCTGTGTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTAGCTACACAGAGAAACCCTGTGTCAAAA  50

seq1  AAGAAAGAAAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGA  150

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200

seq1  GAAAGAAAGAAAGCCTGTCTGTGAATGTTTGTGTGTGTGTATGTGTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGCCTGTCTGTGAATGTTTGTGTGTGTGTATGTGTGTGC  250

seq1  ACACATGCATCTGTGGATATAATAGAATAAATTCTTTTCATACATGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCATCTGTGGATATAATAGAATAAATTCTTTTCATACATGTATT  300

seq1  AAGTTTCTCCAAAAGCATCAGCATCGCTACAACTGAGTGGATTCTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTCCAAAAGCATCAGCATCGCTACAACTGAGTGGATTCTGTTTC  350

seq1  TTTTTATGGCTGAATTGTAGTTCTTCTTGATAATCAATCCATTGTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGGCTGAATTGTAGTTCTTCTTGATAATCAATCCATTGTACTTT  400

seq1  TGGACACCTTTGAAAACTTAGTTGCTTATATTTTCTCTTCCTCTTAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCTTTGAAAACTTAGTTGCTTATATTTTCTCTTCCTCTTAGATT  450

seq1  TTTCATTATTTTGTTGTTAAGAAAGACAGCTATAGATGAAATAAACGTAG  500
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TTTCATTATTTTGTTGTTAAG-AAGACAGCTATAGATG-AATAAACGTAG  498

seq1  AAGGCAACTACTTCTTTAATATGAGAAACACCTTCCCCATCAATGGTATA  550
      ||||||||||||||||||||||||| ||||||||  ||||||||||||||
seq2  AAGGCAACTACTTCTTTAATATGAG-AACACCTT--CCATCAATGGTATA  545

seq1  GAAATTTTCAGTAACTTTCACCATGTTACATGAGTATCAGTGGCTAACAG  600
      |||   ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAA---TTCAGTAAC-TTCACCATGTTACATGAGTATCAGTGGCTAACAG  591

seq1  TATAATGCTATCATAAGATATAAACAACAAAATCAAATAGCAATAGGTAC  650
      ||||||||||||||||||||| ||||||  |||| |||||||||||||||
seq2  TATAATGCTATCATAAGATAT-AACAAC--AATC-AATAGCAATAGGTAC  637

seq1  ATCTGAACAGTAATACTCAAGAAAAACAAAAGATCATTTAATCAATAGTC  700
      ||||||||||||||||||||||     | ||||||| |||||||||||||
seq2  ATCTGAACAGTAATACTCAAGA-----ACAAGATCA-TTAATCAATAGTC  681

seq1  TTGGGCAGCAAATATCCTAATAAACAGAGCAGACTAGTCCTTAGTTTTGA  750
      || |||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TT-GGCAGCAAATATCCTAATAAACAGAGCAGACTAGTCCTTAG--TTGA  728

seq1  TTTCTATAAGTCCCTTCCCTAAAAATGGCACCATTTTTTAGATGTGAAGA  800
       |||||||||| ||||||    || ||||||     || ||||||| |||
seq2  -TTCTATAAGT-CCTTCC---TAAGTGGCAC---AGTTGAGATGTG-AGA  769

seq1  ATAAGATGTGTATAGATAAGCTTACAGAATTTAGTAAAAATCCTTAATTT  850
      || |||||||||||||| ||| ||||| |||||||  |||||||    ||
seq2  AT-AGATGTGTATAGAT-AGC-TACAG-ATTTAGT--AAATCCT---ATT  810

seq1  GTATTCTTTTTTGTAATGAACGACATGTTTACTTTGATTCATGGTTTTGG  900
      ||||  ||  |    ||| |||||||| |||| |||| |||||  ||| |
seq2  GTATCATTCGT----ATG-ACGACATG-TTAC-TTGA-TCATG--TTTTG  850

seq1  GGTACAGTCCATCATGATGGGAAAGTCATGGGTCATGGAGGGAACACACA  950
      |||||||| |||||||||||  ||||||| |||||| |||    ||| | 
seq2  GGTACAGT-CATCATGATGG--AAGTCAT-GGTCAT-GAG---TCAC-CG  891

seq1  GCATCTCGC-TGCAGGAGGCATGGAGC-TATGAGGCTGCTGTTCAGCTTG  998
      ||||||||| |||||   ||||||||| ||||| ||||||||||||| ||
seq2  GCATCTCGCTTGCAG--AGCATGGAGCTTATGA-GCTGCTGTTCAGC-TG  937

seq1  CATTCTCTTT  1008
      || |||||||
seq2  CA-TCTCTTT  946