BAC Information

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BAC

Clone NameB6Ng01-193G03
Chromosome11 (Build37)
Map Location 59,095,870 - 59,269,139
singlet/doubletdoublet
Overlap geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4
Upstream gene4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1
Downstream geneBC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193G03.bB6Ng01-193G03.g
ACCGA016370GA016371
length551989
definitionB6Ng01-193G03.b B6Ng01-193G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,095,870 - 59,096,426)(59,268,151 - 59,269,139)
sequence
attccatttcccctctctctgccaaccagggtggaggacagcctcttggg
agaagcctacaatcttactttcggctagaattttaactgtccaacttgac
atcacattgtaaggtcctctggacaaacccccaccaaataaaattagtgt
tctcctgccattccttctctgaaaggtccagccaccccaccccaccccaa
gccttttcttgggtcctagcagaaggactggcagccaaagttaggcagtg
gaccctaagcacttcagacctcaggtaactgctgaggccgccctcaaaat
gatcccaaaatgcagatgtttaaactatgccttagaaagtgaggctgaaa
ctttttatccttacaaaagcatgcgcgcgcacgcgcgcgagcgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaaacaagaacaagccacac
cagtgaaaatgcccgtgttatgccaatcagatctcagactcctcttgctt
tcattttcactaatgctgttaattttttattacttgttcctagtttgtct
t
gaattcttcctgcatcttgagctacagcatactaaagggcctctgcagca
gccactgcgtcctccagctgctgaagcaactcttctggctgtggtgagaa
tgcgctggtgtccactctctgaaagtcaggattcacaaccacagaggcca
gcacatctgcaaggcggccaatatcaaatgcagcctgctgtaggcccagg
tctaggctccggctgtcccctgaatcccccttcagtccttgctccaggac
aaggagcctcttctcggcgatgactttgaggaaatggtaaaattcttcaa
aattgatccctgtgcaggacttcatgatgacctggaccaagaggaaaggg
aaagtaagccctggggtcacatccagactcagactgcttaggtatgtaaa
gatccctcccacacattcaggggtcaggggctaagaggggacccagagac
aaaggttcagagctaggagaattgccagtagggtctgcgtcatggagcct
ggccctggcatctgtgctggccccaaggccgactcaatatgatctggttg
cttcccacctggcagtggtggtgccagtcaggcatggagtccttccattc
ttcgacctcatgctgcacagcctggagctcttgctgcaggaagtgccaca
tgtttggcaggttgcagccattgacccagttgtggttaatagaaatggtg
tcatcctggagggcagaagacaagctggtctgtgaggcggcagcaggcct
caccatgggcgagcaaaccaagtcccaccccacgcccatgcccaccaggc
tcagtgcttaaggtgggtgtaatagtttcagtgtcagcttgacccccacc
ttagaatcacctgagaaagatatctttttttttttcttttgagaacaggg
attctctcatagcctggctgttcctggaactcactctggtagaccaggct
agccctgaactcataatgagcaaatggtcttacatgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59095870_59096426
seq2: B6Ng01-193G03.b_44_600

seq1  GAATTCATTCCATTTCCCCTCTCTCTGCCAACCAGGGTGGAGGACAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCATTTCCCCTCTCTCTGCCAACCAGGGTGGAGGACAGCCT  50

seq1  CTTGGGAGAAGCCTACAATCTTACTTTCGGCTAGAATTTTAACTGTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGAAGCCTACAATCTTACTTTCGGCTAGAATTTTAACTGTCCAA  100

seq1  CTTGACATCACATTGTAAGGTCCTCTGGACAAACCCCCACCAAATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATCACATTGTAAGGTCCTCTGGACAAACCCCCACCAAATAAAAT  150

seq1  TAGTGTTCTCCTGCCATTCCTTCTCTGAAAGGTCCAGCCACCCCACCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTCCTGCCATTCCTTCTCTGAAAGGTCCAGCCACCCCACCCCA  200

seq1  CCCCAAGCCTTTTCTTGGGTCCTAGCAGAAGGACTGGCAGCCAAAGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGCCTTTTCTTGGGTCCTAGCAGAAGGACTGGCAGCCAAAGTTAG  250

seq1  GCAGTGGACCCTAAGCACTTCAGACCTCAGGTAACTGCTGAGGCCGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGACCCTAAGCACTTCAGACCTCAGGTAACTGCTGAGGCCGCCCT  300

seq1  CAAAATGATCCCAAAATGCAGATGTTTAAACTATGCCTTAGAAAGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGATCCCAAAATGCAGATGTTTAAACTATGCCTTAGAAAGTGAGG  350

seq1  CTGAAACTTTTTATCCTTACAAAAGCATGCGCGCGCACGCGCGCGAGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTTTTATCCTTACAAAAGCATGCGCGCGCACGCGCGCGAGCGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAAACAAGAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAAACAAGAACAAG  450

seq1  CCACACCAGTGAAAATGCCCGTGTTATGCCAATCAGATCTCAGACTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCAGTGAAAATGCCCGTGTTATGCCAATCAGATCTCAGACTCCTC  500

seq1  TTGCTTTCATTTTCACTAATGCTGTTAATTTTTTATTACTTGTTCCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCATTTTCACTAATGCTGTTAATTTTTTATTACTTGTTCCTAGT  550

seq1  TTGTCTT  557
      |||||||
seq2  TTGTCTT  557

seq1: chr11_59268151_59269139
seq2: B6Ng01-193G03.g_64_1052 (reverse)

seq1  AGGCATGT-AGA-CAATTGCTCATTATGAGTTCAAGGCTAGCCTGGTCTA  48
      |||||||| ||| || |||||||||||||||||| |||||||||||||||
seq2  AGGCATGTAAGACCATTTGCTCATTATGAGTTCAGGGCTAGCCTGGTCTA  50

seq1  -CAGAGTGAGTTCCAGG-ACAGCCAGGGCTATGAGAGAAACCCTG-TCTC  95
       |||||||||||||||| ||||||| ||||||||||||| ||||| ||||
seq2  CCAGAGTGAGTTCCAGGAACAGCCA-GGCTATGAGAGAATCCCTGTTCTC  99

seq1  AAAAAAAAAAAAAAAAAAAAAAGATTATC-TTCTCAGGTGATTCT-AGGT  143
      |||| ||||||||||| |       |||| ||||||||||||||| ||||
seq2  AAAAGAAAAAAAAAAAGA-------TATCTTTCTCAGGTGATTCTAAGGT  142

seq1  -GGTGTCAAGCTGACACTGAAACTATTACACCCACCTTAAGCACTGAGCC  192
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCAAGCTGACACTGAAACTATTACACCCACCTTAAGCACTGAGCC  192

seq1  TGGTGGGCATGGGCGTGGGGTGGGACTTGGTTTGCTCGCCCATGGTGAGG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGCATGGGCGTGGGGTGGGACTTGGTTTGCTCGCCCATGGTGAGG  242

seq1  CCTGCTGCCGCCTCACAGACCAGCTTGTCTTCTGCCCTCCAGGATGACAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCCGCCTCACAGACCAGCTTGTCTTCTGCCCTCCAGGATGACAC  292

seq1  CATTTCTATTAACCACAACTGGGTCAATGGCTGCAACCTGCCAAACATGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATTAACCACAACTGGGTCAATGGCTGCAACCTGCCAAACATGT  342

seq1  GGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCCTGCAGCAAGAGCTCCAGGCTGTGCAGCATGAGGTCGAAGAA  392

seq1  TGGAAGGACTCCATGCCTGACTGGCACCACCACTGCCAGGTGGGAAGCAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGACTCCATGCCTGACTGGCACCACCACTGCCAGGTGGGAAGCAA  442

seq1  CCAGATCATATTGAGTCGGCCTTGGGGCCAGCACAGATGCCAGGGCCAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCATATTGAGTCGGCCTTGGGGCCAGCACAGATGCCAGGGCCAGG  492

seq1  CTCCATGACGCAGACCCTACTGGCAATTCTCCTAGCTCTGAACCTTTGTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGACGCAGACCCTACTGGCAATTCTCCTAGCTCTGAACCTTTGTC  542

seq1  TCTGGGTCCCCTCTTAGCCCCTGACCCCTGAATGTGTGGGAGGGATCTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCCCTCTTAGCCCCTGACCCCTGAATGTGTGGGAGGGATCTTT  592

seq1  ACATACCTAAGCAGTCTGAGTCTGGATGTGACCCCAGGGCTTACTTTCCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCTAAGCAGTCTGAGTCTGGATGTGACCCCAGGGCTTACTTTCCC  642

seq1  TTTCCTCTTGGTCCAGGTCATCATGAAGTCCTGCACAGGGATCAATTTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTGGTCCAGGTCATCATGAAGTCCTGCACAGGGATCAATTTTG  692

seq1  AAGAATTTTACCATTTCCTCAAAGTCATCGCCGAGAAGAGGCTCCTTGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTACCATTTCCTCAAAGTCATCGCCGAGAAGAGGCTCCTTGTC  742

seq1  CTGGAGCAAGGACTGAAGGGGGATTCAGGGGACAGCCGGAGCCTAGACCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAAGGACTGAAGGGGGATTCAGGGGACAGCCGGAGCCTAGACCT  792

seq1  GGGCCTACAGCAGGCTGCATTTGATATTGGCCGCCTTGCAGATGTGCTGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTACAGCAGGCTGCATTTGATATTGGCCGCCTTGCAGATGTGCTGG  842

seq1  CCTCTGTGGTTGTGAATCCTGACTTTCAGAGAGTGGACACCAGCGCATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGGTTGTGAATCCTGACTTTCAGAGAGTGGACACCAGCGCATTC  892

seq1  TCACCACAGCCAGAAGAGTTGCTTCAGCAGCTGGAGGACGCAGTGGCTGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAGCCAGAAGAGTTGCTTCAGCAGCTGGAGGACGCAGTGGCTGC  942

seq1  TGCAGAGGCCCTTTAGTATGCTGTAGCTCAAGATGCAGGAAGAATTC  989
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGCCCTTTAGTATGCTGTAGCTCAAGATGCAGGAAGAATTC  989