BAC Information

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BAC

Clone NameB6Ng01-193J15
Chromosome11 (Build37)
Map Location 21,618,221 - 21,750,825
singlet/doubletdoublet
Overlap geneAV249152
Upstream geneAftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, Pgam1-ps1
Downstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193J15.bB6Ng01-193J15.g
ACCGA016528GA016529
length1,1351,093
definitionB6Ng01-193J15.b B6Ng01-193J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,749,679 - 21,750,825)(21,618,221 - 21,619,139)
sequence
gaattctctattcactcttgaaaacaaaagaaaccatgaattacttagaa
ttttgctttagtctttttttctaggacaaagtttgtggtccatgtaccaa
attcaattgacagatgtttaacctacagtgtttaaaagttatttttagtt
acttaccaacactgaaaattggtaaacttttttttctttaaaatttcaca
ttattaaaaagatgatacattcttgcatgtgaaaaggatatgatatttag
acttcagtggctaaatgaagtctgactggagcatagccactgttgtttaa
cttgagtagtttaaactgagattctgtgacctacaaaactcaacatattt
cttgattcgtgaggaagtccttgaaccctgctgtggctcaaaatatttca
ttcccttgcttcttcttgtttcttttgtctcttgcagtgtttttactctc
tcttatcgtacacatgctcacaggacagaaaggcagcagtgaaaaattca
agagactggatatgatctctgctttaacagtcacctaagacaaactatct
catctctttgagcttctttttcctcacttgttcaacaaaagtgatagatt
agtcttgaacagtggcacacatctgtcatatcagcattggaagggagagg
caggaggattagcagttcaaggctagcttgggctgcagaacagattcttg
catcatgatagtacgttcctgaaatgttgggcataaagtctgagttgtcc
atttcaacaatggtttgactcaagacaattcagtgcagatcacatttgtt
atttgacatgatcttccacattattcttaaatctttctattttgttggct
ctgtgccttcaaagaagataccacccagtctccagaggattttcaggtag
gacacatttcaaggtgtgtaatcacatggaagaatgaaaatcttttataa
aattgtgaaactgacagctctacctaacagaagccattaagtatttacaa
agtagcagctgctcttgtagatataacagtacaggggatcaaaataacag
ctgatagtgcagatagcatgacagattctggtgcatacactgaacaatat
tagaaacctctgatgttacacagcatcacattgta
gaattcttttgtgcccacgtgttttcacactctgtgttagcctgtgagaa
tcttccatattacctgtaaatcactttccattcatagtcagctattatgt
acctacacaccacaatgctttgtttttctttcacatgttggtggacattt
ggtttatctcaaggtttaagctaaagcactaaaaatgctctgtactttta
tggccaagcctttatatagacatatatttcatttctgttagaaaaaaacc
tacaaatggacatgccagggccatgtgcttctttaaaagtgattataaaa
attagtatcaatgagcaatgaaagcagcagttgagccaggcagtggtggc
acacgcctttaatgccagctcttgggaggcagaggcaggtggatttctga
gttcgaggccagcctggtctgcagagtgagttccaggacagaactacaca
gagaaaccctgtcttgaaaaaaccaaaccaaaccaaaccaaaccaaaacc
aaaaccaaaaccaaagccaaaaacaaacagcaattgttccacatcttcac
taagacttggtataaatggtcttctcaactttagcctttataatccatgt
atagtattgttaattttatttccctggtggcttttggagttgaacatttt
tatgtttagtgccatatatatttttcctttctttttgtttatttagtcac
attgtttattttaaaaaaatcaacaactacttctatcagactttgaggat
ttgttttatttttaagtatgtctgtgtcggggtcgaggtggggcgtgtgt
gtggatataagactgtaagtacttaaagagtccagaagagggcatttgat
cccctggagctggcgttcattagtagttgtaaattgtgtgtcataggtac
tggaaagggaacttagtttctctgaaagagagcagtatgcactctaccac
tgagccatcgcttcagtcactcagcattactctccagtgatgatctcact
agtgacattttttttcatatttgagtttctctctgctttttgattctaat
tctgatgtaggagatctatctattctaatgtagtcatatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21749679_21750825
seq2: B6Ng01-193J15.b_43_1177 (reverse)

seq1  TACAATGTGATTGCTGTGTAAACATCAGAGTTTTCTAAATATTGTTCAGT  50
      |||||||||| |||||||| |||||||||| ||||| |||||||||||||
seq2  TACAATGTGA-TGCTGTGT-AACATCAGAGGTTTCT-AATATTGTTCAGT  47

seq1  GTATGCA-CAG-ATCTGGTCATGGCTTATCTTGCACTTATCAGCTTGTTT  98
      ||||||| ||| |||| ||||||   |||| ||||| ||||||||   ||
seq2  GTATGCACCAGAATCT-GTCATG--CTATC-TGCAC-TATCAGCT--GTT  90

seq1  ATTTTGATTCCCCTGTACCTGTATATCTAACAAGAGCAGCTGCTACTTTG  148
      ||||||| ||||||||||   ||||||| |||||||||||||||||||||
seq2  ATTTTGA-TCCCCTGTACTGTTATATCT-ACAAGAGCAGCTGCTACTTTG  138

seq1  TAAATACTTTAATGGCTTCTGTTAGGTAGAGCTGTCAGTTTCACAATTTT  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAC-TTAATGGCTTCTGTTAGGTAGAGCTGTCAGTTTCACAATTTT  187

seq1  ATAAAAGATTTTCATTCTTCCATGTGATTACACACCTTGAAATGTGTCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATTTTCATTCTTCCATGTGATTACACACCTTGAAATGTGTCCT  237

seq1  ACCCTGAAAATCCTCTGGAGACTGGGTGGTATCTTCTTTGAAGGCACAGA  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CCTGAAAATCCTCTGGAGACTGGGTGGTATCTTCTTTGAAGGCACAGA  286

seq1  GCCAACAAAATAGAAAGATTTAAGAATAATGTGGAAGATCATGTCAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAAATAGAAAGATTTAAGAATAATGTGGAAGATCATGTCAAATA  336

seq1  ACAAATGTGATCTGCACTGAATTGTCTTGAGTCAAACCATTGTTGAAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTGATCTGCACTGAATTGTCTTGAGTCAAACCATTGTTGAAATG  386

seq1  GACAACTCAGACTTTATGCCCAACATTTCAGGAACGTACTATCATGATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTCAGACTTTATGCCCAACATTTCAGGAACGTACTATCATGATGC  436

seq1  AAGAATCTGTTCTGCAGCCCAAGCTAGCCTTGAACTGCTAATCCTCCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTGTTCTGCAGCCCAAGCTAGCCTTGAACTGCTAATCCTCCTGC  486

seq1  CTCTCCCTTCCAATGCTGATATGACAGATGTGTGCCACTGTTCAAGACTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTCCAATGCTGATATGACAGATGTGTGCCACTGTTCAAGACTA  536

seq1  ATCTATCACTTTTGTTGAACAAGTGAGGAAAAAGAAGCTCAAAGAGATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCACTTTTGTTGAACAAGTGAGGAAAAAGAAGCTCAAAGAGATGA  586

seq1  GATAGTTTGTCTTAGGTGACTGTTAAAGCAGAGATCATATCCAGTCTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTGTCTTAGGTGACTGTTAAAGCAGAGATCATATCCAGTCTCTT  636

seq1  GAATTTTTCACTGCTGCCTTTCTGTCCTGTGAGCATGTGTACGATAAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCACTGCTGCCTTTCTGTCCTGTGAGCATGTGTACGATAAGAG  686

seq1  AGAGTAAAAACACTGCAAGAGACAAAAGAAACAAGAAGAAGCAAGGGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAAACACTGCAAGAGACAAAAGAAACAAGAAGAAGCAAGGGAAT  736

seq1  GAAATATTTTGAGCCACAGCAGGGTTCAAGGACTTCCTCACGAATCAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTTGAGCCACAGCAGGGTTCAAGGACTTCCTCACGAATCAAGA  786

seq1  AATATGTTGAGTTTTGTAGGTCACAGAATCTCAGTTTAAACTACTCAAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTGAGTTTTGTAGGTCACAGAATCTCAGTTTAAACTACTCAAGT  836

seq1  TAAACAACAGTGGCTATGCTCCAGTCAGACTTCATTTAGCCACTGAAGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACAGTGGCTATGCTCCAGTCAGACTTCATTTAGCCACTGAAGTC  886

seq1  TAAATATCATATCCTTTTCACATGCAAGAATGTATCATCTTTTTAATAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCATATCCTTTTCACATGCAAGAATGTATCATCTTTTTAATAAT  936

seq1  GTGAAATTTTAAAGAAAAAAAAGTTTACCAATTTTCAGTGTTGGTAAGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTTAAAGAAAAAAAAGTTTACCAATTTTCAGTGTTGGTAAGTA  986

seq1  ACTAAAAATAACTTTTAAACACTGTAGGTTAAACATCTGTCAATTGAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATAACTTTTAAACACTGTAGGTTAAACATCTGTCAATTGAATT  1036

seq1  TGGTACATGGACCACAAACTTTGTCCTAGAAAAAAAGACTAAAGCAAAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATGGACCACAAACTTTGTCCTAGAAAAAAAGACTAAAGCAAAAT  1086

seq1  TCTAAGTAATTCATGGTTTCTTTTGTTTTCAAGAGTGAATAGAGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTAATTCATGGTTTCTTTTGTTTTCAAGAGTGAATAGAGAATTC  1135

seq1: chr11_21618221_21619139
seq2: B6Ng01-193J15.g_250_1160

seq1  AAATGCTCTGTACTTTTATGGCCAAGCCTTTATATAGACATATATTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTGTACTTTTATGGCCAAGCCTTTATATAGACATATATTTCAT  50

seq1  TTCTGTTAGAAAAAAACCTACAAATGGACATGCCAGGGCCATGTGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAGAAAAAAACCTACAAATGGACATGCCAGGGCCATGTGCTTCT  100

seq1  TTAAAAGTGATTATAAAAATTAGTATCAATGAGCAATGAAAGCAGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGATTATAAAAATTAGTATCAATGAGCAATGAAAGCAGCAGTT  150

seq1  GAGCCAGGCAGTGGTGGCACACGCCTTTAATGCCAGCTCTTGGGAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGCAGTGGTGGCACACGCCTTTAATGCCAGCTCTTGGGAGGCAG  200

seq1  AGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAGTT  250

seq1  CCAGGACAGAACTACACAGAGAAACCCTGTCTTGAAAAAACCAAACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGAACTACACAGAGAAACCCTGTCTTGAAAAAACCAAACCAAA  300

seq1  CCAAACCAAACCAAAACCAAAACCAAAACCAAAGCCAAAAACAAACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAACCAAAACCAAAACCAAAACCAAAGCCAAAAACAAACAGCA  350

seq1  ATTGTTCCACATCTTCACTAAGACTTGGTATAAATGGTCTTCTCAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCACATCTTCACTAAGACTTGGTATAAATGGTCTTCTCAACTTT  400

seq1  AGCCTTTATAATCCATGTATAGTATTGTTAATTTTATTTCCCTGGTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTATAATCCATGTATAGTATTGTTAATTTTATTTCCCTGGTGGCT  450

seq1  TTTGGAGTTGAACATTTTTATGTTTAGTGCCATATATATTTTTCCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTTGAACATTTTTATGTTTAGTGCCATATATATTTTTCCTTTCT  500

seq1  TTTTGTTTATTTAGTCACATTGTTTATTTTAAAAAAATCAACAACTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTATTTAGTCACATTGTTTATTTTAAAAAAATCAACAACTACTT  550

seq1  CTATCAGACTTTGAGGATTTGTTTTATTTTTAAGTATGTCTGTGTCGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGACTTTGAGGATTTGTTTTATTTTTAAGTATGTCTGTGTCGGGG  600

seq1  TCGAGGTGGGGCGTGTGTGTGGATATAAGACTGTAAGTACTTAAAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGTGGGGCGTGTGTGTGGATATAAGACTGTAAGTACTTAAAGAGTC  650

seq1  CAGAAGAGGGCATTTGATCCCCTGGAGCTGGCGTTCATTAGTAGTTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGCATTTGATCCCCTGGAGCTGGCGTTCATTAGTAGTTGTAA  700

seq1  ATTGTGTGTCATAGGTACTGGAAAGGGAACTTAGTTCCTCTGAAAGAGAG  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTGTGTGTCATAGGTACTGGAAAGGGAACTTAGTTTCTCTGAAAGAGAG  750

seq1  CAGTATGCACTCTACCACTGAGCCATCGCTTCAGTCACTCAGCATTTACT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGTATGCACTCTACCACTGAGCCATCGCTTCAGTCACTCAGCA-TTACT  799

seq1  CTCCAGTGATGATCTCACTTAGTGACATTTTTTTCAATATTTGGAGGTTT  850
      |||||||||||||||||| |||||||||||||||  |||||||   ||||
seq2  CTCCAGTGATGATCTCAC-TAGTGACATTTTTTTTCATATTTG--AGTTT  846

seq1  CTCTCTGCTTTTTGTATCTAATTTCCTTGATGTTAGAGAATCTAATCTA-  899
      ||||||||||||||  |||||||    ||||||  ||| |||| ||||| 
seq2  CTCTCTGCTTTTTGATTCTAATT---CTGATGTAGGAG-ATCT-ATCTAT  891

seq1  TCTAATGTAGTCATATGATT  919
      ||||||||||||||||||||
seq2  TCTAATGTAGTCATATGATT  911