BAC Information

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BAC

Clone NameB6Ng01-193K19
Chromosome11 (Build37)
Map Location 49,598,963 - 49,763,730
singlet/doubletdoublet
Overlap geneGfpt2, Mapk9, Rasgef1c
Upstream geneGnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073
Downstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193K19.bB6Ng01-193K19.g
ACCGA016579GA016580
length952820
definitionB6Ng01-193K19.b B6Ng01-193K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,598,963 - 49,599,906)(49,762,913 - 49,763,730)
sequence
gaattccttcctggcttagaagcttcagttagaaggtaaactcggatata
ctcttttgagctcccactctctctaaagcttttctgcccctttctccctc
cctctcctgtacataggtttctgtatatgcttgctcagagcgtcccagcg
tggtaaatgggatgagtttctctcttcccccttgctgtcactcaggaaag
acgcagtgtggagaatatttgtgagataaactaatgacctctaggtgtga
ggcttcctttgcttctgcagagtttctgtttgggaattttgtttgtttag
ttggtttttttcttttttgttttgtttgtttgttgtttgtttgtttgttt
gtttctgagacaactgaaacagttggggtggaatgagctcaggcagtacc
agataatggagagaaggggggaataaaagaccgtcaccagctgtccttgt
ctgtaaagttactacaacaaaacaccacaggaggcttacaatcagtagaa
tctagtttttcaacgttctggagatgaggaagtccaaaaatcaaggcact
ggcagattctgtgtctggatcatttggctctttgtatggatgtcttcaca
tggaggaaggggagaggcagcttttgggatctcttttttggctttcattt
taaaagacatagtcttatgtgactctggctggcctcgaactctctacata
gaccaggttggctttgaactcatagagcactctgtctaccaaagtgctgg
aatttaaatgcagatgctgccatgttcatccttgggatctctttctctgt
ggatagcactcctttatcatctttcttcctgacctggccatgaagcttcc
tatcaccattggctatactaccgggacgcttgacattcagattagagaag
agcatggtcccctgggccttggccacaggttgatggggactacacacctt
gg
gaattcacctgactttatccacagggggctggtgacagcactggctggga
gactggtgacagcactggctgggagactggggacagcactggctgggaga
ctggggacagcactggctgggagagggatgctaagctgtcttatctgggg
ctccagatggccccctgctcccgctgacagaccctgctgcttccacactt
ctagaagcagtgggtttggagagctcggggcacttgcaggcaatctgttg
ttgcaagtggagagaaaaagcctcacagtagattggtagctgaaaataga
gttctccaaagagggatgagtcggcttctccccgctccgttatccatcct
cagtcatgttgacaattatttcctaaaccttactttgaagagctgtccca
cttaacggatcccccaaactatagcaaagggcagatgtttctacctccca
atgacaacgctttttttttttttaggatttaacattggtaatttaatgta
tgtccttgtgagactatgccggggcctagcaaacacagaagtggatgctc
acagtcagctattggatggaccacagggcccccaatggaggagctagaga
aagtacccaaggagctaaagggatctgcaatcctatagatggaacaacaa
tatgaactaaccagtaccccccagagctcgtgtctctagctgcatatgaa
tcagaaaatggcctagtcggccatcagtggaaagaggcccattagtcgtg
caaactctatatgcctcagtacagggggaacgacagggccaagaagtggg
agtgggtggggggagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49598963_49599906
seq2: B6Ng01-193K19.b_50_1001

seq1  GAATTCCTTCCTGGCTTAGAAGCTTCAGTTAGAAGGTAAACTCGGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTGGCTTAGAAGCTTCAGTTAGAAGGTAAACTCGGATATA  50

seq1  CTCTTTTGAGCTCCCACTCTCTCTAAAGCTTTTCTGCCCCTTTCTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGAGCTCCCACTCTCTCTAAAGCTTTTCTGCCCCTTTCTCCCTC  100

seq1  CCTCTCCTGTACATAGGTTTCTGTATATGCTTGCTCAGAGCGTCCCAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTGTACATAGGTTTCTGTATATGCTTGCTCAGAGCGTCCCAGCG  150

seq1  TGGTAAATGGGATGAGTTTCTCTCTTCCCCCTTGCTGTCACTCAGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATGGGATGAGTTTCTCTCTTCCCCCTTGCTGTCACTCAGGAAAG  200

seq1  ACGCAGTGTGGAGAATATTTGTGAGATAAACTAATGACCTCTAGGTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGTGTGGAGAATATTTGTGAGATAAACTAATGACCTCTAGGTGTGA  250

seq1  GGCTTCCTTTGCTTCTGCAGAGTTTCTGTTTGGGAATTTTGTTTGTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTTGCTTCTGCAGAGTTTCTGTTTGGGAATTTTGTTTGTTTAG  300

seq1  TTGGTTTTTTTCTTTTTTGTTTTGTTTGTTTGTTGTTTGTTTGTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTCTTTTTTGTTTTGTTTGTTTGTTGTTTGTTTGTTTGTTT  350

seq1  GTTTCTGAGACAACTGAAACAGTTGGGGTGGAATGAGCTCAGGCAGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGACAACTGAAACAGTTGGGGTGGAATGAGCTCAGGCAGTACC  400

seq1  AGATAATGGAGAGAAGGGGGGAATAAAAGACCGTCACCAGCTGTCCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGGAGAGAAGGGGGGAATAAAAGACCGTCACCAGCTGTCCTTGT  450

seq1  CTGTAAAGTTACTACAACAAAACACCACAGGAGGCTTACAATCAGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGTTACTACAACAAAACACCACAGGAGGCTTACAATCAGTAGAA  500

seq1  TCTAGTTTTTCAACGTTCTGGAGATGAGGAAGTCCAAAAATCAAGGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTTTCAACGTTCTGGAGATGAGGAAGTCCAAAAATCAAGGCACT  550

seq1  GGCAGATTCTGTGTCTGGATCATTTGGCTCTTTGTATGGATGTCTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTCTGTGTCTGGATCATTTGGCTCTTTGTATGGATGTCTTCACA  600

seq1  TGGAGGAAGGGGAGAGGCAGCTTTTGGGATCTCTTTTTTGGCTTTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGGGGAGAGGCAGCTTTTGGGATCTCTTTTTTGGCTTTCATTT  650

seq1  T-AAAGACATAGTCTTATGTGACTCTGGCTGGCCTCGAACTCTCTACATA  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACATAGTCTTATGTGACTCTGGCTGGCCTCGAACTCTCTACATA  700

seq1  GACCAGGTTGGCTTTGAACTCATAGAGCACTCTGTCTACC-AAGTGCTGG  748
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACCAGGTTGGCTTTGAACTCATAGAGCACTCTGTCTACCAAAGTGCTGG  750

seq1  AA-TTAAAGGCAGATGCTGCCATGTTCATCCTTGGGATCTC-TTCTCTGT  796
      || ||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  AATTTAAATGCAGATGCTGCCATGTTCATCCTTGGGATCTCTTTCTCTGT  800

seq1  GGATAGCACTCCTTTATCATC-TTCCTCCTGACCTGGCCATGAAGCTTCC  845
      ||||||||||||||||||||| ||| ||||||||||||||||||||||||
seq2  GGATAGCACTCCTTTATCATCTTTCTTCCTGACCTGGCCATGAAGCTTCC  850

seq1  TATCACCATTGGCTATACTACGGGGACGC-TGACATTCAGATTAGAG-AG  893
      ||||||||||||||||||||| ||||||| ||||||||||||||||| ||
seq2  TATCACCATTGGCTATACTACCGGGACGCTTGACATTCAGATTAGAGAAG  900

seq1  AGCAGTGGTCCCCT-GGCCTTGGCCACAGGTTGATGGGAACTACACA-CT  941
      |||| ||||||||| ||||||||||||||||||||||| |||||||| ||
seq2  AGCA-TGGTCCCCTGGGCCTTGGCCACAGGTTGATGGGGACTACACACCT  949

seq1  TGG  944
      |||
seq2  TGG  952

seq1: chr11_49762913_49763730
seq2: B6Ng01-193K19.g_64_883 (reverse)

seq1  ACACACT-CCCCCACCCACTCCCACTTCTTGGCCCTGTCGTT-CCCCTGT  48
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  ACACACTCCCCCCACCCACTCCCACTTCTTGGCCCTGTCGTTCCCCCTGT  50

seq1  ACTGAGGCATATAGAGTTTGCACGACTAATGGGCCTCTTTCCACTGATGG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCATATAGAGTTTGCACGACTAATGGGCCTCTTTCCACTGATGG  100

seq1  CCGACTAGGCCATTTTCTGATTCATATGCAGCTAGAGACACGAGCTCTGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTAGGCCATTTTCTGATTCATATGCAGCTAGAGACACGAGCTCTGG  150

seq1  GGGGTACTGGTTAGTTCATATTGTTGTTCCATCTATAGGATTGCAGATCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGGTTAGTTCATATTGTTGTTCCATCTATAGGATTGCAGATCC  200

seq1  CTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGG  250

seq1  TCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC  300

seq1  GGCATAGTCTCACAAGGACATACATTAAATTACCAATGTTAAATCCTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTCTCACAAGGACATACATTAAATTACCAATGTTAAATCCTAAA  350

seq1  AAAAAAAAAAGCGTTGTCATTGGGAGGTAGAAACATCTGCCCTTTGCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGCGTTGTCATTGGGAGGTAGAAACATCTGCCCTTTGCTAT  400

seq1  AGTTTGGGGGATCCGTTAAGTGGGACAGCTCTTCAAAGTAAGGTTTAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGGGATCCGTTAAGTGGGACAGCTCTTCAAAGTAAGGTTTAGGA  450

seq1  AATAATTGTCAACATGACTGAGGATGGATAACGGAGCGGGGAGAAGCCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTCAACATGACTGAGGATGGATAACGGAGCGGGGAGAAGCCGA  500

seq1  CTCATCCCTCTTTGGAGAACTCTATTTTCAGCTACCAATCTACTGTGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCTCTTTGGAGAACTCTATTTTCAGCTACCAATCTACTGTGAGG  550

seq1  CTTTTTCTCTCCACTTGCAACAACAGATTGCCTGCAAGTGCCCCGAGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCTCCACTTGCAACAACAGATTGCCTGCAAGTGCCCCGAGCTC  600

seq1  TCCAAACCCACTGCTTCTAGAAGTGTGGAAGCAGCAGGGTCTGTCAGCGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCCACTGCTTCTAGAAGTGTGGAAGCAGCAGGGTCTGTCAGCGG  650

seq1  GAGCAGGGGGCCATCTGGAGCCCCAGATAAGACAGCTTAGCATCCCTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGGGCCATCTGGAGCCCCAGATAAGACAGCTTAGCATCCCTCTC  700

seq1  CCAGCCAGTGCTGTCCCCAGTCTCCCAGCCAGTGCTGTCCCCAGTCTCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGTGCTGTCCCCAGTCTCCCAGCCAGTGCTGTCCCCAGTCTCCC  750

seq1  AGCCAGTGCTGTCACCAGTCTCCCAGCCAGTGCTGTCACCAGCCCCCTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGCTGTCACCAGTCTCCCAGCCAGTGCTGTCACCAGCCCCCTGT  800

seq1  GGATAAAGTCAGGTGAATTC  818
      ||||||||||||||||||||
seq2  GGATAAAGTCAGGTGAATTC  820