BAC Information

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BAC

Clone NameB6Ng01-193N18
Chromosome11 (Build37)
Map Location 87,009,464 - 87,179,826
singlet/doubletdoublet
Overlap geneTrim37, Ppm1e
Upstream geneBrip1, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik
Downstream geneRad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193N18.bB6Ng01-193N18.g
ACCGA016708GA016709
length8411,185
definitionB6Ng01-193N18.b B6Ng01-193N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,009,464 - 87,010,288)(87,179,275 - 87,179,826)
sequence
gaattctttggttatttcttcaggtaattcttgacagtttttcttttgtg
actcaagttatgtgttgctacacttaggagggacccacacgtttctgaaa
ctctggttattcttttgtgttttgtctttgtaggaaatgccagattaaaa
cctaaaaaaaaaaaaaagaaagaaagaaagaaaaaagaaaaagccggacg
tggtggtacacgcctttaatcccagcacttgggaggcagaggcaggcaga
tttctgagtttgaggctagcctggtctacagagtgagttccaggacagcc
agggctacacaaagaaacccgactcaaaaaacaaaaacaaaaaacaatgt
agtaagattaccactgcacattggtcaatattaatttttttattttttat
tttttttatatagcctgggttggttttttaacttgttatgtagccaaaga
tggctttaaatttctgatcctttaacctccagctctcaacctctcaagtg
ttaggattacaaacagtgtcaccacacttaatctggttaatattttaaaa
actggcagtactaaatgctcagcttatagagacatgcaaactcttactct
attcaccggattgaaaacttttccttgctttgcccctggcttgccccagg
ttgtgtatacatatacatcgtttgtgtggtgtttttgctcttgaattctg
gggtagttaacaagggccccatgctttagttaattgttctagtattcatt
tgttttgacagtatgggttactttgtggttttcattgtctgcaaggcagg
gtaattcagctagtaatttgttttttttatatgtggcaggg
gaattccagggaagcaagggctaaacagagaaaccttgtcttgaataaac
caaaaaaaaaaaaaaaaaaaaagccaggtggtagttggcacacatcttta
atcacagcactcaggagacaaaggcaggaagcctagtctatagagtgaat
tttagaatagccagggctacatgcaagggtacacagagagatcctgtcac
acacacacacaaaatcaagccaaaccaaccaaacaatgacaaaaaatctt
tacatacaaaaattaaccagtcccccaaaatgatacaactcaatgatctt
ctctcagctacagtagaaactgcgggtcttaacattggattctagagttt
cactatagaatgtatttttatatatgtatccactaccaaaaccaaaaaaa
aatacttggcagagttagaactagaaaaataattagctttctattctctt
tcatagctcatatttatttttctttaaaaaaaaagatttatatatttatt
tcatgtatgtgagtctctgtctttagacacaccagaagagggcatctggc
ctgcattacagatggttgtcaggctccatgtggttgctgggatttgaact
cgggacctctggaagagcaggctcttaaccactgagccatctctccagac
ctcatatttattttttcaaagattctatctatctatctatctatctatct
atctatctatctatctatctatctgtctgtctgtctgtctgtctgtctgt
ctgtctgtctgtctgtctgtctgtctaagagacaatgtctttctatagag
ccctggctgtcctggaactcactatgtagaccaagctggtcttgaactca
tttattctctgcctcctgagtgttaggatcaaaggtgtgcatcatcatgc
cctgggccttttagaaaaaaatgtaaaagtttatatgtgtgcatgccaca
tgtgtataggtgccctcagagatcagcagaggacattggatccactgggg
gtttggagttaccgaattgtgcccagctgaagttggtgctgaaactaact
cagttcccttgaagagcaaatgctctatcaactagctagttctcagcccc
cgatcagtttgaaataggtaaaacccccacgttgttactaggcctaagcc
ttactagttggccattgcattgactctgtaaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_87009464_87010288
seq2: B6Ng01-193N18.b_47_886

seq1  GAATTCTTTGGTTATTTCTTCAGGTAATTCTTGACAGTTTTTCTTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTATTTCTTCAGGTAATTCTTGACAGTTTTTCTTTTGTG  50

seq1  ACTCAAGTTATGTGTTGCTACACTTAGGAGGGACCCACACGTTTCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTTATGTGTTGCTACACTTAGGAGGGACCCACACGTTTCTGAAA  100

seq1  CTCTGGTTATTCTTTTGTGTTTTGTCTTTGTAGGAAATGCCAGATTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTATTCTTTTGTGTTTTGTCTTTGTAGGAAATGCCAGATTAAAA  150

seq1  CCTAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAAGAAAAAGCCGGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAAGAAAAAGCCGGACG  200

seq1  TGGTGGTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGA  250

seq1  TTTCTGAGTTTGAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTGAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  300

seq1  AGGGCTACACAAAGAAACCCGACTCAAAAAACAAAAACAAAAAACAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAAAGAAACCCGACTCAAAAAACAAAAACAAAAAACAATGT  350

seq1  AGTAAGATTACCACTGCACATTGGTCAATATTAATTTTTTTATTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTACCACTGCACATTGGTCAATATTAATTTTTTTATTTTTTAT  400

seq1  TTTTTTTATATAGCCTGGGTTGGTTTTTTAACTTGTTATGTAGCCAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATATAGCCTGGGTTGGTTTTTTAACTTGTTATGTAGCCAAAGA  450

seq1  TGGCTTTAAATTTCTGATCCTTTAACCTCCAGCTCTCAACCTCTCAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAAATTTCTGATCCTTTAACCTCCAGCTCTCAACCTCTCAAGTG  500

seq1  TTAGGATTACAAACAGTGTCACCACACTTAATCTGGTTAATATTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTACAAACAGTGTCACCACACTTAATCTGGTTAATATTTTAAAA  550

seq1  ACTGGCAGTACTAAATGCTCAGCTTATAGAGACATGCAAACTCTTACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGTACTAAATGCTCAGCTTATAGAGACATGCAAACTCTTACTCT  600

seq1  ATTCACCGGATTGAAAACTTTTCCTTGCTTTGCCCCTGGCTTGCCCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCGGATTGAAAACTTTTCCTTGCTTTGCCCCTGGCTTGCCCCAGG  650

seq1  TTGTGTATACATATACATCGTTTGTGTGGTG-TTTTGCTCTTGAATTCT-  698
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TTGTGTATACATATACATCGTTTGTGTGGTGTTTTTGCTCTTGAATTCTG  700

seq1  GGGTAG-TAACAAGG--CCCATGC-TTAGTT-ATTGTTCTAGTATTCATT  743
      |||||| ||||||||  ||||||| |||||| ||||||||||||||||||
seq2  GGGTAGTTAACAAGGGCCCCATGCTTTAGTTAATTGTTCTAGTATTCATT  750

seq1  --GTTTGACAGTAT-GGTTACTTTGTGGTTTTCATTGTCTGC-AGGCAGG  789
         ||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TGTTTTGACAGTATGGGTTACTTTGTGGTTTTCATTGTCTGCAAGGCAGG  800

seq1  --TATTCAGCTAGTAA-TTGTTTTTTTTATATGT-GCAGG  825
         ||||||||||||| ||||||||||||||||| |||||
seq2  GTAATTCAGCTAGTAATTTGTTTTTTTTATATGTGGCAGG  840

seq1: chr11_87179275_87179826
seq2: B6Ng01-193N18.g_702_1248 (reverse)

seq1  GGCC-TACA-AGTCAATGCATATGCAAATAATTAAGGCTTAGGCCTAGTA  48
      |||| |||| ||||||||||   || ||  | ||||||||||||||||||
seq2  GGCCTTACAGAGTCAATGCAATGGCCAACTAGTAAGGCTTAGGCCTAGTA  50

seq1  ACAAATGTGGTGTTTTTA-CTATTTTAAAAACTGAATTTGGGGGCTGGAG  97
      || || |||| | ||||| ||||||   |||||||  | ||||||| |||
seq2  AC-AACGTGGGGGTTTTACCTATTT--CAAACTGA--TCGGGGGCT-GAG  94

seq1  ACTTAGCCTAGTGGATTAGAGCATTTGCTCTTCCAGGGGACCTGAGTTTA  147
      |  ||| ||||| || |||||||||||||||| || |||| ||||| |||
seq2  AACTAG-CTAGTTGA-TAGAGCATTTGCTCTT-CAAGGGAACTGAG-TTA  140

seq1  GTTTTCAGCACCAACTTCAGGCTGGGCACAATTTCGGGTAACTCCAA--C  195
      | ||||||||||||||||| |||||||||||||   |||||||||||  |
seq2  G-TTTCAGCACCAACTTCA-GCTGGGCACAATT--CGGTAACTCCAAACC  186

seq1  CCCAGTGGATCCAATGTCCTCTGCTGATCTCTGAGGGCACCTATACACAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGGATCCAATGTCCTCTGCTGATCTCTGAGGGCACCTATACACAT  236

seq1  GTGGCATGCACACATATAAACTTTTACATTTTTTTCTAAAAGGCC--AGG  293
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  GTGGCATGCACACATATAAACTTTTACATTTTTTTCTAAAAGGCCCAGGG  286

seq1  CATGATGATGCACACCTTTGATCCTAACACTCAGGAGGCAGAGA--TAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  CATGATGATGCACACCTTTGATCCTAACACTCAGGAGGCAGAGAATAAAT  336

seq1  GAGTTCAAGACCAGCTTGGTCTACATAGTGAGTTCCAGGACAGCCAGGGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGACCAGCTTGGTCTACATAGTGAGTTCCAGGACAGCCAGGGC  386

seq1  TCTATAGAAAGACATTGTCTCTTAGACAGACAGACAGACAGACAGACAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAAAGACATTGTCTCTTAGACAGACAGACAGACAGACAGACAGA  436

seq1  CAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATA  486

seq1  GATAGATAGATAGATAGATAGATAGAATCTTTGAAAAAATAAATATGAGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGAATCTTTGAAAAAATAAATATGAGG  536

seq1  TCTGGAGAGAT  552
      |||||||||||
seq2  TCTGGAGAGAT  547