BAC Information

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BAC

Clone NameB6Ng01-194F24
Chromosome11 (Build37)
Map Location 99,715,176 - 99,716,172
singlet/doubletsinglet
Overlap geneOTTMUSG00000002191
Upstream geneWipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196
Downstream geneKrtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194F24.bB6Ng01-194F24.g
ACCGA017087GA017088
length1,2011,003
definitionB6Ng01-194F24.b B6Ng01-194F24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcaggttcaagacccgtggaaaggcctg
tacgcttattttgtgtaccatatttcctctttgttcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcatctagaatccgccctgc
cttaaccacttgataacatgtgaaaaggaacaaaagggcttctaacatta
gaaaaaattcaaggccaaacatattccactttacttctgatagactgtct
tgaatttccttagaaagttcaagatcagacttacctcgtaaagctgtact
cactggtactctcgttccccagctgaaaagttctgaattcatacagttga
atccttcttaacagtctgctttacgggaacctttattaccgcgacccgca
gttctggttctggaatgagggatcttccttgcgccagtcccgagtttttt
ctcgtcccggaattcggcaccaattgttattagacgcgttctcacgaccg
gccaggaaagacgcaacaaaccagaatcttctgcggcaaagctttattgc
ttacatcttcaggagccagagtgcaagaagcaagagagagagaaaacgaa
accccgtccctattaaggagaattttccttcgcctaggacgtgtcactcc
ctgattggctgcagcccatcggccgagttgacgtcacggggaaaggcaga
gcacatgggagtagagaaccaccctcggcatatgcgcagattatttgttt
accacttagaacacagctgtcagcgccatcttgtaacggcgaatgtgggc
gcggctcccaacaaaaaagttctctcaactatctgaaatcataaatttaa
attttatttgaatcaatcaggattatgtaatgtcacttatgaagacttta
aaatcaacatttcttctaccagcattatttcacaaatttaaactactgtt
gattctgtagaaaggatgctcaatagtatgggaccaatagcaggatgaca
tcaagatttatgcccgaaagatctctttcaattcgccaatattataaccc
a
gaattcttttcttaagtaatttggagtaggaaaccacttctaatatggat
ctttgaggtagaaaaataagcctttcgtacagatgttttgaggtggggat
atccacctttaatctagaccacacttgtcctatacgaaggaccgaagaca
gaagcttgctctctgccagcttgctctcactcttgctagcaagaaagtct
gtctcttcactggcattaaagcttggttatttagtattctggcataaact
aaagacaagtgaagacgtccagcatcatagagtaaagaaatactggattt
ttggaccttctgttcataaatggcagttgtaggattagctggaccaaggt
tttaggctggtcaatgaacaatgaagagtaaattcaggctgaagctgagc
acctctctcagcagtctttcagatactgtagagagaagttgaaagaacat
gtcaatgatagaatgctgatctcagcaaagcttagggagcagggttgcta
tgggaacataaatgcttcacatcaattgaagacatcagacagcaggaagg
ttggcagtggctgcacagccagcaagagccagcaagagggcagcatagag
tgtgctgcagccactggccacacaggctggtctccaatgcgtggtcctgc
agtagttggttgggctgtcagtaagaagagaaacatggtgtgggtcctgg
tgacttgcggtggggcggggtagggcttctgaggggagacaagtttctca
ttgccagtgattgtctctatcatatctttcatgtactcttttccagcata
gaaaggacagtttaaggtttattaagctttaaaagttacactaactggag
ttctgtaataggactgacagactaaaaaccgatgtggaaagaagaaaaat
gaatgcttttacctctaatgttaagctttgaagcatgtaccttttcacca
gtcataatttctttgtaattttcaaccttagccatattgattttttatca
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99715176_99716172
seq2: B6Ng01-194F24.g_63_1065 (reverse)

seq1  TGAT-ATAAAAAATCAATATGG-TAAAGTTGAAAATTACAAAGAAA-TAA  47
      |||| ||||||||||||||||| ||| ||||||||||||||||||| || 
seq2  TGATGATAAAAAATCAATATGGCTAAGGTTGAAAATTACAAAGAAATTAT  50

seq1  GACTGGTG-AAAGGTACATTGCTTCAAA-CTTAACATTTAGA-GTAAAAG  94
      |||||||| ||||||||| ||||||||| ||||||| ||||| |||||||
seq2  GACTGGTGAAAAGGTACA-TGCTTCAAAGCTTAACA-TTAGAGGTAAAAG  98

seq1  CATTCATTTTTCTTCTTTTCCACATCGGTTTTTAGTCTGTCAGTCCTATT  144
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATTCATTTTTCTTC-TTTCCACATCGGTTTTTAGTCTGTCAGTCCTATT  147

seq1  ACAG-ACTCCAGTTAGTGTAACTTTTAAAGC-TAATAAACCTTAAACTGT  192
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAGAACTCCAGTTAGTGTAACTTTTAAAGCTTAATAAACCTTAAACTGT  197

seq1  CC-TTCTATGCTGGAAAAGAGTACATGAAAGATATGATAGAGACAATCAC  241
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTATGCTGGAAAAGAGTACATGAAAGATATGATAGAGACAATCAC  247

seq1  TGGCAATGAGAAACTTGTCTCCCCTCAGAAGCCCTACCCCGCCCCACCGC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGAGAAACTTGTCTCCCCTCAGAAGCCCTACCCCGCCCCACCGC  297

seq1  AAGTCACCAGGACCCACACCATGTTTCTCTTCTTACTGACAGCCCAACCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCAGGACCCACACCATGTTTCTCTTCTTACTGACAGCCCAACCA  347

seq1  ACTACTGCAGGACCACGCATTGGAGACCAGCCTGTGTGGCCAGTGGCTGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGCAGGACCACGCATTGGAGACCAGCCTGTGTGGCCAGTGGCTGC  397

seq1  AGCACACTCTATGCTGCCCTCTTGCTGGCTCTTGCTGGCTGTGCAGCCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTCTATGCTGCCCTCTTGCTGGCTCTTGCTGGCTGTGCAGCCAC  447

seq1  TGCCAACCTTCCTGCTGTCTGATGTCTTCAATTGATGTGAAGCATTTATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCTTCCTGCTGTCTGATGTCTTCAATTGATGTGAAGCATTTATG  497

seq1  TTCCCATAGCAACCCTGCTCCCTAAGCTTTGCTGAGATCAGCATTCTATC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAGCAACCCTGCTCCCTAAGCTTTGCTGAGATCAGCATTCTATC  547

seq1  ATTGACATGTTCTTTCAACTTCTCTCTACAGTATCTGAAAGACTGCTGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATGTTCTTTCAACTTCTCTCTACAGTATCTGAAAGACTGCTGAG  597

seq1  AGAGGTGCTCAGCTTCAGCCTGAATTTACTCTTCATTGTTCATTGACCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGCTCAGCTTCAGCCTGAATTTACTCTTCATTGTTCATTGACCAG  647

seq1  CCTAAAACCTTGGTCCAGCTAATCCTACAACTGCCATTTATGAACAGAAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACCTTGGTCCAGCTAATCCTACAACTGCCATTTATGAACAGAAG  697

seq1  GTCCAAAAATCCAGTATTTCTTTACTCTATGATGCTGGACGTCTTCACTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAAATCCAGTATTTCTTTACTCTATGATGCTGGACGTCTTCACTT  747

seq1  GTCTTTAGTTTATGCCAGAATACTAAATAACCAAGCTTTAATGCCAGTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGTTTATGCCAGAATACTAAATAACCAAGCTTTAATGCCAGTGA  797

seq1  AGAGACAGACTTTCTTGCTAGCAAGAGTGAGAGCAAGCTGGCAGAGAGCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACTTTCTTGCTAGCAAGAGTGAGAGCAAGCTGGCAGAGAGCA  847

seq1  AGCTTCTGTCTTCGGTCCTTCGTATAGGACAAGTGTGGTCTAGATTAAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGTCTTCGGTCCTTCGTATAGGACAAGTGTGGTCTAGATTAAAG  897

seq1  GTGGATATCCCCACCTCAAAACATCTGTACGAAAGGCTTATTTTTCTACC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATCCCCACCTCAAAACATCTGTACGAAAGGCTTATTTTTCTACC  947

seq1  TCAAAGATCCATATTAGAAGTGGTTTCCTACTCCAAATTACTTAAGAAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCCATATTAGAAGTGGTTTCCTACTCCAAATTACTTAAGAAAA  997

seq1  GAATTC  997
      ||||||
seq2  GAATTC  1003