BAC Information

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BAC

Clone NameB6Ng01-194H16
Chromosome11 (Build37)
Map Location 54,982,923 - 54,984,074
singlet/doubletsinglet
Overlap geneSlc36a2
Upstream geneDbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3
Downstream geneSlc36a1, Fat2, Sparc, Atox1, G3bp, Glra1, Nmur2, LOC100040816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194H16.bB6Ng01-194H16.g
ACCGA017162GA017163
length1,155595
definitionB6Ng01-194H16.b B6Ng01-194H16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactacgaataatcaatccagaagaatggatgccgggagccaagg
cagcagaccccactataaatgcagttatacatcgctgaattcactgcatt
ggtagcctcctttgaggaagtctggtgaagagcatttagaataaggcatt
tcatgggctggagagatggcactgacagccaagcccgatgacctgagttc
cagccccagggcccacacagtggaagaagagaaccaactcctctaagttt
tcttctgactgcctcatgtgggtcatgtgagcacatatgcacacacacac
acacacatacatgtttgtgtgtgtgcatatataatttaaatgtctttaaa
aattaaaaccaaaaagaagttctcaagtaccctgtacttgctcgagctcc
cccgactctttgtaagagagtctggttctggggaaagccctagatccacc
atgcgcccggatgtttttttccacctcatcttttcccattccttcctcag
gtagtagaagctgttaacagcacaaccatcagctgccacaagaacgagac
ggtagttctgacgcccaccatggactctcgactctacatgctctccttcc
tgcccgttctggggcttctggtgttcgtcaggaacctgcgtgtcctcacc
atcttctccctgctggccaacatcagcatgctggtcagcctggtcatcat
tgcccagtacatcatccaggtgggcacacaccacccactgactccccagg
acacaggacccttgtatcaataatagacagcaggggccaagtcctaaatg
ggtgggtttgttcctcacccttgagcctaggacccatctccccatcttgc
tgtaacctcccctctttgtactgtctcctcttttgagctatctccttcct
gctatgtctccaaatgacactttttaataccaaattcagctcttaaaaag
gcttctgtcttgtggagttggggaggcaactccatttagtaaaccgtttg
ccagtacctgtgctgtggcaacattgctataattccagcatctgggggtc
ggggggaattagagtgtgcagagccaaagtagggtgatttctgttcgtct
agtcagttgaatgaatcgcttagtgagagacgctaacaaaaaatagccga
gaggg
gaattccccagaaatctatgagggcgatcctagctaagactcctagcaaa
gggggatacagagcttgagccagccatctcctgtaaccaggcaagacttc
cagtggagagactgggacaccaatccagctaaaaaagcttcaacctacaa
tctgtcctgtctacaaaatgtgcagtgataaaagtggcacagaaattatg
gggattgtcaaccagtgactggtccagcttgacaaggacaccagaagaaa
acccacagaacctgggctaatagggctcacagagactgacaaccaggcag
cctgcatgggactggcctagccctctgcacatatgttagttttatagctt
ggtcttcttgtgggactcctaacagtgggagcagggactgtctctgactc
tttagcgtgctttgggaccctttcctgcctaatgggttccttctaaggcc
tcacccagccttacttcaaggggatttaattactcttcctgaaccttact
gatctgccatgtttgctttagatccatgggagcctgcccttttctgaaga
ggaggagtggaagggggtagagaaaggagggactgggaggaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54982923_54984074
seq2: B6Ng01-194H16.b_47_1201 (reverse)

seq1  CCCTCTCTGCTTTATTTTTTGTTAGCGTCTCTCACTAAACCGGATCCTAT  50
      ||||||| ||  |||||||||||||||||||||||||| |  ||| |  |
seq2  CCCTCTCGGC--TATTTTTTGTTAGCGTCTCTCACTAAGC--GATTCATT  46

seq1  CAACTTGACTAGACTGACAGGAATCACCCTATCTCTGCTCTGCTCACTCT  100
      |||| |||||||||  |||| ||||||||||  |  ||||||| ||||||
seq2  CAAC-TGACTAGACGAACAGAAATCACCCTACTTTGGCTCTGCACACTCT  95

seq1  AATTCCCCC---ACCCCAG-TGCTGGAATTATAAGCATG-TGCCACAGCA  145
      |||||||||    |||||| |||||||||||||   ||| ||||||||||
seq2  AATTCCCCCCGACCCCCAGATGCTGGAATTATAGCAATGTTGCCACAGCA  145

seq1  CAGGTACTGGCAAACGGTTTACT-AATGGAGTTGCCTCCCCAACTCCAC-  193
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CAGGTACTGGCAAACGGTTTACTAAATGGAGTTGCCTCCCCAACTCCACA  195

seq1  AGACAG-AGCCTTTTTAAGAGCTGAATTTGGTATTAAAAAGTGTCATTTG  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAGCCTTTTTAAGAGCTGAATTTGGTATTAAAAAGTGTCATTTG  245

seq1  GAGACATAGCAGGAAGGAGATAGCTCAAAAGAGGAGACAGTACAAAGAGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAGCAGGAAGGAGATAGCTCAAAAGAGGAGACAGTACAAAGAGG  295

seq1  GGAGGTTACAGCAAGATGGGGAGATGGGTCCTAGGCTCAAGGGTGAGGAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTACAGCAAGATGGGGAGATGGGTCCTAGGCTCAAGGGTGAGGAA  345

seq1  CAAACCCACCCATTTAGGACTTGGCCCCTGCTGTCTATTATTGATACAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCACCCATTTAGGACTTGGCCCCTGCTGTCTATTATTGATACAAG  395

seq1  GGTCCTGTGTCCTGGGGAGTCAGTGGGTGGTGTGTGCCCACCTGGATGAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGTGTCCTGGGGAGTCAGTGGGTGGTGTGTGCCCACCTGGATGAT  445

seq1  GTACTGGGCAATGATGACCAGGCTGACCAGCATGCTGATGTTGGCCAGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGCAATGATGACCAGGCTGACCAGCATGCTGATGTTGGCCAGCA  495

seq1  GGGAGAAGATGGTGAGGACACGCAGGTTCCTGACGAACACCAGAAGCCCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGATGGTGAGGACACGCAGGTTCCTGACGAACACCAGAAGCCCC  545

seq1  AGAACGGGCAGGAAGGAGAGCATGTAGAGTCGAGAGTCCATGGTGGGCGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGGGCAGGAAGGAGAGCATGTAGAGTCGAGAGTCCATGGTGGGCGT  595

seq1  CAGAACTACCGTCTCGTTCTTGTGGCAGCTGATGGTTGTGCTGTTAACAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTACCGTCTCGTTCTTGTGGCAGCTGATGGTTGTGCTGTTAACAG  645

seq1  CTTCTACTACCTGAGGAAGGAATGGGAAAAGATGAGGTGGAAAAAAACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTACCTGAGGAAGGAATGGGAAAAGATGAGGTGGAAAAAAACAT  695

seq1  CCGGGCGCATGGTGGATCTAGGGCTTTCCCCAGAACCAGACTCTCTTACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCGCATGGTGGATCTAGGGCTTTCCCCAGAACCAGACTCTCTTACA  745

seq1  AAGAGTCGGGGGAGCTCGAGCAAGTACAGGGTACTTGAGAACTTCTTTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCGGGGGAGCTCGAGCAAGTACAGGGTACTTGAGAACTTCTTTTT  795

seq1  GGTTTTAATTTTTAAAGACATTTAAATTATATATGCACACACACAAACAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAATTTTTAAAGACATTTAAATTATATATGCACACACACAAACAT  845

seq1  GTATGTGTGTGTGTGTGTGTGCATATGTGCTCACATGACCCACATGAGGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTGTGTGTGTGTGCATATGTGCTCACATGACCCACATGAGGC  895

seq1  AGTCAGAAGAAAACTTAGAGGAGTTGGTTCTCTTCTTCCACTGTGTGGGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGAAAACTTAGAGGAGTTGGTTCTCTTCTTCCACTGTGTGGGC  945

seq1  CCTGGGGCTGGAACTCAGGTCATCGGGCTTGGCTGTCAGTGCCATCTCTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCTGGAACTCAGGTCATCGGGCTTGGCTGTCAGTGCCATCTCTC  995

seq1  CAGCCCATGAAATGCCTTATTCTAAATGCTCTTCACCAGACTTCCTCAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATGAAATGCCTTATTCTAAATGCTCTTCACCAGACTTCCTCAAA  1045

seq1  GGAGGCTACCAATGCAGTGAATTCAGCGATGTATAACTGCATTTATAGTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTACCAATGCAGTGAATTCAGCGATGTATAACTGCATTTATAGTG  1095

seq1  GGGTCTGCTGCCTTGGCTCCCGGCATCCATTCTTCTGGATTGATTATTCG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGCTGCCTTGGCTCCCGGCATCCATTCTTCTGGATTGATTATTCG  1145

seq1  TAGTGAATTC  1152
      ||||||||||
seq2  TAGTGAATTC  1155