BAC Information

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BAC

Clone NameB6Ng01-194P11
Chromosome11 (Build37)
Map Location 68,819,399 - 68,820,471
singlet/doubletsinglet
Overlap genePfas
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik
Downstream gene1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194P11.bB6Ng01-194P11.g
ACCGA017516GA017517
length1,2021,078
definitionB6Ng01-194P11.b B6Ng01-194P11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcttacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccatgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgattgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgtataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaaggggttgtaatgctgcagctg
tccacttctgggtgggtgccttgcataacgtgcagagccatcaagttaaa
ccaggctctagtcttctcctcttcgggtcagtgatcatagggaaccaccc
caatgaggctataaggtgcatgcttggcagcagtatggcattgtaacaag
gaatagaaaccataggcatttgagcaacttctttcatggtaacttgcttt
gtggctatcaggaacttgctctgaccgatcacgtattaatccaacttcca
ttttgaaatatagactgctgcctgtgcacgttcccacttttatgactcgc
aggcttgagatagaacccagctcatgttatggatacttcaggacccaata
tc
gaattcttttggtatcccatccaagaccagtattgtgcagctgtcaatcc
agaggctacttaactgttcttataagccctctcagcagcacgagattcaa
ttaattttctacgtcttcaccctcctctcgtggctctaagcacaccatca
tcctcctgaaggtctttccctggctgatcccgagtcatccgagcttaccc
agcttctaactgttaggtatccagggttctgtccttatttctctcccttt
gtagtaagtggtttcagctagtcctgtgctttaaagtctacgtagtaaaa
ccaaccaatgaaatcgccacattcatctgttaatttaaaataatttgata
gcattcaaactaatgtttgccaaaaatattctataacttttcccaacagt
gaatctctaaaactccagattggtatatttaaataccatcccacctacat
ataagggtgtcataaatatagccaacaagggctgaatatttaacgcaaaa
tatttgtccagtatccatgaagccccgggctggtttgattcccaggacca
tataaactgggcaaagtggcacatatgcctgtaatcccagaacatggaac
gtggaggcagggggatcctaagctcaatgccattcccagctacacagtga
gtttgagaccagccaagacttattattttttttaaagatgtatttatata
ttttttatgtgagtacactgtagctgtcttcagacaccccagaagaaggt
atctgatctcattacagatggctgtgagccaccatgtggttgctgggaat
tgaactcaggacttctggaagagcagtcagtgctcttaaccactgaacca
tctctccagcccccacagcctagacttattgagagacttctctttcttct
tccctttttgttcttttgagaggagagttcatgggaagggagctggaagg
taggcagttaactgtagtatggctggtgccccagtcaaggcagattggct
atggctctgctcttctcctattataggggacaactactccatcccaaaca
gttgcaactggtttgcacagggcatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68819399_68820471
seq2: B6Ng01-194P11.g_65_1142

seq1  GAATTCTTTTGGTATCCCATCCAAGACCAGTATTGTGCAGCTGTCAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGTATCCCATCCAAGACCAGTATTGTGCAGCTGTCAATCC  50

seq1  AGAGGCTACTTAACTGTTCTTATAAGCCCTCTCAGCAGCACGAGATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTACTTAACTGTTCTTATAAGCCCTCTCAGCAGCACGAGATTCAA  100

seq1  TTAATTTTCTACGTCTTCACCCTCCTCTCGTGGCTCTAAGCACACCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTCTACGTCTTCACCCTCCTCTCGTGGCTCTAAGCACACCATCA  150

seq1  TCCTCCTGAAGGTCTTTCCCTGGCTGATCCCGAGTCATCCGAGCTTACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGAAGGTCTTTCCCTGGCTGATCCCGAGTCATCCGAGCTTACCC  200

seq1  AGCTTCTAACTGTTAGGTATCCAGGGTTCTGTCCTTATTTCTCTCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAACTGTTAGGTATCCAGGGTTCTGTCCTTATTTCTCTCCCTTT  250

seq1  GTAGTAAGTGGTTTCAGCTAGTCCTGTGCTTTAAAGTCTACGTAGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAGTGGTTTCAGCTAGTCCTGTGCTTTAAAGTCTACGTAGTAAAA  300

seq1  CCAACCAATGAAATCGCCACATTCATCTGTTAATTTAAAATAATTTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAATGAAATCGCCACATTCATCTGTTAATTTAAAATAATTTGATA  350

seq1  GCATTCAAACTAATGTTTGCCAAAAATATTCTATAACTTTTCCCAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAAACTAATGTTTGCCAAAAATATTCTATAACTTTTCCCAACAGT  400

seq1  GAATCTCTAAAACTCCAGATTGGTATATTTAAATACCATCCCACCTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTAAAACTCCAGATTGGTATATTTAAATACCATCCCACCTACAT  450

seq1  ATAAGGGTGTCATAAATATAGCCAACAAGGGCTGAATATTTAACGCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTGTCATAAATATAGCCAACAAGGGCTGAATATTTAACGCAAAA  500

seq1  TATTTGTCCAGTATCCATGAAGCCCCGGGCTGGTTTGATTCCCAGGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCCAGTATCCATGAAGCCCCGGGCTGGTTTGATTCCCAGGACCA  550

seq1  TATAAACTGGGCAAAGTGGCACATATGCCTGTAATCCCAGAACATGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTGGGCAAAGTGGCACATATGCCTGTAATCCCAGAACATGGAAC  600

seq1  GTGGAGGCAGGGGGATCCTAAGCTCAATGCCATTCCCAGCTACACAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCAGGGGGATCCTAAGCTCAATGCCATTCCCAGCTACACAGTGA  650

seq1  GTTTGAGACCAGCCAAGACTTATTATTTTTTTTAAAGATGTATTTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGACCAGCCAAGACTTATTATTTTTTTTAAAGATGTATTTATATA  700

seq1  TTTTTTATGTGAGTACACTGTAGCTGTCTTCAGACACCCCAGAAGAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATGTGAGTACACTGTAGCTGTCTTCAGACACCCCAGAAGAAGGT  750

seq1  ATCTGATCTCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCTCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAAT  800

seq1  TGAACTCAGGACTTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACTTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCA  850

seq1  TCTCTCCAGCCCCCACAGCCTAGACTTATTGAGAGACTTCTCTTTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCCCCCACAGCCTAGACTTATTGAGAGACTTCTCTTTCTTCT  900

seq1  TCCCTTTTTGTTCTTTTGAGAGGAAGAGTTCATGGGAAGGGAGCTGGAAG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCCTTTTTGTTCTTTTGAGAGG-AGAGTTCATGGGAAGGGAGCTGGAAG  949

seq1  GTAGGCAG-TAACTGTAGTATGGCTGGTGCCCCCAGTC-AGGCAGATTGG  998
      |||||||| |||||||||||||||||||| |||||||| |||||||||||
seq2  GTAGGCAGTTAACTGTAGTATGGCTGGTG-CCCCAGTCAAGGCAGATTGG  998

seq1  CTATGCCTCTGCTCTTCT-CTATTATAGGGAAC-ACTACTCCAT-CCAAA  1045
      ||||| |||||||||||| ||||||||||| || |||||||||| |||||
seq2  CTATGGCTCTGCTCTTCTCCTATTATAGGGGACAACTACTCCATCCCAAA  1048

seq1  CAGTTGCAACT-GTTTGCACA-GGCATAGG  1073
      ||||||||||| ||||||||| ||||||||
seq2  CAGTTGCAACTGGTTTGCACAGGGCATAGG  1078