BAC Information

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BAC

Clone NameB6Ng01-196A06
Chromosome11 (Build37)
Map Location 39,524,905 - 39,665,876
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196A06.bB6Ng01-196A06.g
ACCGA018274GA018275
length977480
definitionB6Ng01-196A06.b B6Ng01-196A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,664,901 - 39,665,876)(39,524,905 - 39,525,390)
sequence
gaattccctcaaagttcaagtgttaagaaggtaatcctcaatgggccagt
actggtatgcatgagcctcatgaaagttgattagggcctgaggactgtgt
ctgtgaatggactaatattctatgggaatccatcagttataggaagaatg
gatttcttacgaaagtgaatctgccttctgtgactctgtccacctaactc
tcttgccctattatatcaccttgggatgaagtatcacaatgacctcacat
ttatgaccaccaacatcttgatccgaggattccagcctcttgaactgtta
gaaatgcatcttcttaggtaaatttccttgtatatggggtcctgttacaa
caatgtaaaaaagatatgtatactaagtcaaatgaatatgcaaaaccatt
ctgaattcctgctgtatatctctgatgttatgcaaattcagatgatccaa
attagcttggtcacagaaaaccccaggaacattgcatttctatactactt
gccagcaaatgggaatatctttaataacaatattagcacatttctaaaaa
caaaacaaaactagattagatcacttcatgacaccttttactttgtgacc
atggatttctgatgagttctatatatttttaattacctagaactcatatg
acactcattgaggagaaaaaatacacaaggtcctttggtaacccctagtt
ccctaaaaggttaaacattattttcttttgtagaatagaatgtgttgagt
tggtaagatgcctcaatcattgcactgtggtgctggtctttcagaggatc
agtgttccttccctagtacccatttcagagaactcacaactacctcaatt
tccaacgacagaagatctgatcctgccattttctggtgtctctaggcaac
accaccacacacacacacacacacacacacacacacacgcacagagagcg
gtagagggggaggggggagggagaggt

tttgtataactttgtataaccagatctcagacaagtttcaaccagaccac
accctgaggagaggtgtttaatagtgtttacaatttgcactagtttttgc
tctacgtattggtaaagctcagttatttatttttgcttccatttaaaatt
tgtcttgtcctgtaaccctgtgtgtttttatcctaaaagaaagtaagtaa
ctctccaaagttgctacaaagtgtggtatacctctttagatagaatttga
tttattctaaatatctggtattcatccttttactcttttgcaggtattct
tttcatgcatttacaaatgcacagttttcattttccttcagtttacttac
agagagaaaggggaatcctatcttacttaataaattgtggataacttcta
tgaaacatagattgaataaaagagtttcaagaagtggacagatgagagag
agagagagagagagggagggagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39664901_39665876
seq2: B6Ng01-196A06.b_43_1019 (reverse)

seq1  ACCTCTCCCT--CCCCTCCCCCTCTACCGCTCTCTGGTGCGTGTGTGTGT  48
      ||||||||||  ||||||||||||||||||||||| ||||||||||||||
seq2  ACCTCTCCCTCCCCCCTCCCCCTCTACCGCTCTCT-GTGCGTGTGTGTGT  49

seq1  GTGTGTGTGTGTGTGTGTGTGTGGTGGTGTTGCCTAGAGACACCAGAAAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGGTGGTGTTGCCTAGAGACACCAGAAAA  99

seq1  TGGCAGGATCAGATCTTCTGTCGTTGGAAATTGAGGTAGTTGTGAGTTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGATCAGATCTTCTGTCGTTGGAAATTGAGGTAGTTGTGAGTTCT  149

seq1  CTGAAATGGGTACTAGGGAAGGAACACTGATCCTCTGAAAGACCAGCACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGGGTACTAGGGAAGGAACACTGATCCTCTGAAAGACCAGCACC  199

seq1  ACAGTGCAATGATTGAGGCATCTTACCAACTCAACACATTCTATTCTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCAATGATTGAGGCATCTTACCAACTCAACACATTCTATTCTACA  249

seq1  AAAGAAAATAATGTTTAACCTTTTAGGGAACTAGGGGTTACCAAAGGACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATAATGTTTAACCTTTTAGGGAACTAGGGGTTACCAAAGGACC  299

seq1  TTGTGTATTTTTTCTCCTCAATGAGTGTCATATGAGTTCTAGGTAATTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTTTTTCTCCTCAATGAGTGTCATATGAGTTCTAGGTAATTAA  349

seq1  AAATATATAGAACTCATCAGAAATCCATGGTCACAAAGTAAAAGGTGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAGAACTCATCAGAAATCCATGGTCACAAAGTAAAAGGTGTCA  399

seq1  TGAAGTGATCTAATCTAGTTTTGTTTTGTTTTTAGAAATGTGCTAATATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGATCTAATCTAGTTTTGTTTTGTTTTTAGAAATGTGCTAATATT  449

seq1  GTTATTAAAGATATTCCCATTTGCTGGCAAGTAGTATAGAAATGCAATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAAGATATTCCCATTTGCTGGCAAGTAGTATAGAAATGCAATGT  499

seq1  TCCTGGGGTTTTCTGTGACCAAGCTAATTTGGATCATCTGAATTTGCATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGTTTTCTGTGACCAAGCTAATTTGGATCATCTGAATTTGCATA  549

seq1  ACATCAGAGATATACAGCAGGAATTCAGAATGGTTTTGCATATTCATTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAGATATACAGCAGGAATTCAGAATGGTTTTGCATATTCATTTG  599

seq1  ACTTAGTATACATATCTTTTTTACATTGTTGTAACAGGACCCCATATACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTATACATATCTTTTTTACATTGTTGTAACAGGACCCCATATACA  649

seq1  AGGAAATTTACCTAAGAAGATGCATTTCTAACAGTTCAAGAGGCTGGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTACCTAAGAAGATGCATTTCTAACAGTTCAAGAGGCTGGAAT  699

seq1  CCTCGGATCAAGATGTTGGTGGTCATAAATGTGAGGTCATTGTGATACTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGATCAAGATGTTGGTGGTCATAAATGTGAGGTCATTGTGATACTT  749

seq1  CATCCCAAGGTGATATAATAGGGCAAGAGAGTTAGGTGGACAGAGTCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAAGGTGATATAATAGGGCAAGAGAGTTAGGTGGACAGAGTCACA  799

seq1  GAAGGCAGATTCACTTTCGTAAGAAATCCATTCTTCCTATAACTGATGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGATTCACTTTCGTAAGAAATCCATTCTTCCTATAACTGATGGA  849

seq1  TTCCCATAGAATATTAGTCCATTCACAGACACAGTCCTCAGGCCCTAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAGAATATTAGTCCATTCACAGACACAGTCCTCAGGCCCTAATC  899

seq1  AACTTTCATGAGGCTCATGCATACCAGTACTGGCCCATTGAGGATTACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCATGAGGCTCATGCATACCAGTACTGGCCCATTGAGGATTACCT  949

seq1  TCTTAACACTTGAACTTTGAGGGAATTC  976
      ||||||||||||||||||||||||||||
seq2  TCTTAACACTTGAACTTTGAGGGAATTC  977


seq1: chr11_39524905_39525390
seq2: B6Ng01-196A06.g_68_553

seq1  GAATTCTTTGTATAACTTTGTATAACCAGATCTCAGACAAGTTTCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATAACTTTGTATAACCAGATCTCAGACAAGTTTCAACCA  50

seq1  GACCACACCCTGAGGAGAGGTGTTTAATAGTGTTTACAATTTGCACTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACCCTGAGGAGAGGTGTTTAATAGTGTTTACAATTTGCACTAGT  100

seq1  TTTTGCTCTACGTATTGGTAAAGCTCAGTTATTTATTTTTGCTTCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCTACGTATTGGTAAAGCTCAGTTATTTATTTTTGCTTCCATTT  150

seq1  AAAATTTGTCTTGTCCTGTAACCCTGTGTGTTTTTATCCTAAAAGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGTCTTGTCCTGTAACCCTGTGTGTTTTTATCCTAAAAGAAAGT  200

seq1  AAGTAACTCTCCAAAGTTGCTACAAAGTGTGGTATACCTCTTTAGATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTCTCCAAAGTTGCTACAAAGTGTGGTATACCTCTTTAGATAGA  250

seq1  ATTTGATTTATTCTAAATATCTGGTATTCATCCTTTTACTCTTTTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTATTCTAAATATCTGGTATTCATCCTTTTACTCTTTTGCAGG  300

seq1  TATTCTTTTCATGCATTTACAAATGCACAGTTTTCATTTTCCTTCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTCATGCATTTACAAATGCACAGTTTTCATTTTCCTTCAGTTT  350

seq1  ACTTACAGAGAGAAAGGGGAATCCTATCTTACTTAATAAATTGTGGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGAGAGAAAGGGGAATCCTATCTTACTTAATAAATTGTGGATAA  400

seq1  CTTCTATGAAACATAGATTGAATAAAAGAGTTTCAAGAAGTGGACAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGAAACATAGATTGAATAAAAGAGTTTCAAGAAGTGGACAGATG  450

seq1  AGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGAG  486
      ||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGAG  486


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