BAC Information

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BAC

Clone NameB6Ng01-196D20
Chromosome11 (Build37)
Map Location 100,905,590 - 101,063,941
singlet/doubletdoublet
Overlap geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1
Upstream geneKrt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneRamp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196D20.bB6Ng01-196D20.g
ACCGA018431GA018432
length1,1301,128
definitionB6Ng01-196D20.b B6Ng01-196D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,062,842 - 101,063,941)(100,905,590 - 100,906,707)
sequence
gaattcactctgtagaccaggctggccttgaactcagaaatccacctgcc
tctgcctcccaagtgctgggattaaagggacgtgccactactgcctggct
atcactaggttttataattgccactccaatacctgggtgcagaccttagc
cttcttgctcataccatacctgaaaatgcagtttgacagcacctactgat
ggtccagacgcacaaaaagactgcagactgataagagggctctgcaggta
aaggggcttgaagactcaagttcgatctccaggacccactcattagggga
ggaccaactgttaaagttgttctccagcctccacacttacactacagcac
acacctacacaagcatgcacatgcatacacaatgaataaatgaagtgcaa
taaaattcttcaaaagaaatggcaaggagaaaagagtgcagaagggagaa
cagagatgagagccaggtgcctgggccagtttgtccagcaagaagcagcc
cagcgctgacaccctgatcccacagctccctgacttctgcagccggtgtg
gtttcttctaggagcacagccataagcattactaagccaggctcttctga
aggggttgggagtctgtttcatgctccttcctgtggctgctgaggaggat
tacgagtggaagggatttgcacgttcattccagagcccatatctgtttcc
ttgcaacacagattcttctttaaattgtattatttttatttctgtgtgtg
gtgtataagtgtgtaagtgtgcgtgtgccatagcatttctgtggagggca
gagaacaactcttgggtattgggtcctttccgtaagcaataaggagctgt
gaaaacagactcaggtcatcagagttgccggctgctgtttcctgcctcag
gccacagcaacaggtttctttaccctaaaagtctatagagtttacatgtg
aatttttctttttttaaaaagggcagctggggcatggtggtgcattgcct
tttactccccagcactttgggaaaggcagaagcaggcagtacctctgagt
tctcaagcccaaccctagtctatagagcttagttcttgtaagcttgttta
taaacctattatagttggccttatatagtt
gaattccaagccagggtgagctacatagtaagatcatgtctcgaacaatt
agatgagtaaagggggcataatttagaactaccatttgatgggacactta
ctgggtttgtcctggtgccagctcattacttagagaaatagtcgtagacc
aataaggatctattgtttggggggaaaatgtgtgctgctgttggaaacag
tctgtttgactggtgggctttgttgtctcttactttgcagaaaggaattc
agtgtttcctcatcgtggtggcgatgctctgcgtcccttggatgcttctg
tttaagccgctgatccttcgccatcagtacctgaggaagaagcatttggt
gagtgtctgtctgtggctgaaggttactagactttagactttttcctcgc
ctaagatccaggcagcgccttagaggatgtaattaactgtgcacacgtgc
atgtgttccgttatggatttgggttacatatgagcatgaaccccgggcct
gccaacgtcagagacacctggatcggagagaataaatcactatgttttta
cctttcctggtcgtgatttttgtcacgctctcggcagcagaggccagccc
tgggcccacacgtctagatgcggcatcagccaaatatcaaggttaggaga
gctgcagacagtgagctcactcgtgtggtttgcctgggcagccacaggac
tgacccaaagacatatttttttttaatgaaactatgacgctttcaccaac
tgacacacctggaaaggatctgacttaaagcacactgatttttttttttt
ttttgtttcttcttcttctaagaagcagcatatatacacacaaggtgttt
acttaacagatgtgtgtataccgactctacacacagaacacacaaagtta
agcttgccaaatgttcgatactgcgtgtaatttctggctatcccataatg
cttactgcatttgcccgggaaaacctaaggagaatctttattgcaatgag
tcccatgggctggtgagatgatccttccgttgggagagcagcttgaatta
caggacccttcgttcttcttttctgaccatcttcatctttcatgtgcctt
cattcggtcctccctctgctccatccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101062842_101063941
seq2: B6Ng01-196D20.b_48_1177 (reverse)

seq1  AACTATATA--GCCAACTAT-ATA-GTTTATAAACAAG--TTCCAGAACT  44
      |||||||||  ||||||||| ||| |||||||||||||  | | ||||||
seq2  AACTATATAAGGCCAACTATAATAGGTTTATAAACAAGCTTACAAGAACT  50

seq1  -AGCTCTATAGACTA-GGTTGGCCT--GGAACTCAGA-GTACTGCCTGCT  89
       |||||||||||||| |||||| ||   ||||||||| ||||||||||||
seq2  AAGCTCTATAGACTAGGGTTGGGCTTGAGAACTCAGAGGTACTGCCTGCT  100

seq1  TCTGCCTT---CCAAGTGCTGGGGA-TTAAAGGC-ATGCACCACCATG-C  133
      ||||||||   | |||||||||||| | |||||| ||||||||||||| |
seq2  TCTGCCTTTCCCAAAGTGCTGGGGAGTAAAAGGCAATGCACCACCATGCC  150

seq1  CCAGCTGCC---TTTTAAAAAAGAAAA--TCACATGT-AACTCTATAGAC  177
      |||||||||   ||| |||||||||||  |||||||| ||||||||||||
seq2  CCAGCTGCCCTTTTTAAAAAAAGAAAAATTCACATGTAAACTCTATAGAC  200

seq1  TTTTAGGTTAAAG-AACCTG-TGCTGTGG-CTGA-GCAGGAAACAGCAGC  223
      ||||||| ||||| |||||| |||||||| |||| |||||||||||||||
seq2  TTTTAGGGTAAAGAAACCTGTTGCTGTGGCCTGAGGCAGGAAACAGCAGC  250

seq1  CGGCAACTCTGATGACCTGAGTCTG-TTTCACAGCTCC-TATTGCTTACG  271
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CGGCAACTCTGATGACCTGAGTCTGTTTTCACAGCTCCTTATTGCTTACG  300

seq1  GAAAGGA-CCAATACCCAAGAGTTGTTCTCTGCCCTCCACAGAAATGCTA  320
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACCCAATACCCAAGAGTTGTTCTCTGCCCTCCACAGAAATGCTA  350

seq1  TGGCACACGCACACTTACACACTTATACACCACACACAGAAATAAAAATA  370
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACGCACACTTACACACTTATACACCACACACAGAAATAAAAATA  400

seq1  ATACAATTTAAAGAAGAATCTGTGTTGCAAGGAAACAGATATGGGCTCTG  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTAAAGAAGAATCTGTGTTGCAAGGAAACAGATATGGGCTCTG  450

seq1  GAATGAACGTGCAAATCCCTTCCACTCGTAATCCTCCTCAGCAGCCACAG  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACGTGCAAATCCCTTCCACTCGTAATCCTCCTCAGCAGCCACAG  500

seq1  GAAGGAGCATGAAACAGACTCCCAACCCCTTCAGAAGAGCCTGGCTTAGT  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCATGAAACAGACTCCCAACCCCTTCAGAAGAGCCTGGCTTAGT  550

seq1  AATGCTTATGGCTGTGCTCCTAGAAGAAACCACACCGGCTGCAGAAGTCA  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTATGGCTGTGCTCCTAGAAGAAACCACACCGGCTGCAGAAGTCA  600

seq1  GGGAGCTGTGGGATCAGGGTGTCAGCGCTGGGCTGCTTCTTGCTGGACAA  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGTGGGATCAGGGTGTCAGCGCTGGGCTGCTTCTTGCTGGACAA  650

seq1  ACTGGCCCAGGCACCTGGCTCTCATCTCTGTTCTCCCTTCTGCACTCTTT  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCAGGCACCTGGCTCTCATCTCTGTTCTCCCTTCTGCACTCTTT  700

seq1  TCTCCTTGCCATTTCTTTTGAAGAATTTTATTGCACTTCATTTATTCATT  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGCCATTTCTTTTGAAGAATTTTATTGCACTTCATTTATTCATT  750

seq1  GTGTATGCATGTGCATGCTTGTGTAGGTGTGTGCTGTAGTGTAAGTGTGG  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCATGTGCATGCTTGTGTAGGTGTGTGCTGTAGTGTAAGTGTGG  800

seq1  AGGCTGGAGAACAACTTTAACAGTTGGTCCTCCCCTAATGAGTGGGTCCT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAGAACAACTTTAACAGTTGGTCCTCCCCTAATGAGTGGGTCCT  850

seq1  GGAGATCGAACTTGAGTCTTCAAGCCCCTTTACCTGCAGAGCCCTCTTAT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCGAACTTGAGTCTTCAAGCCCCTTTACCTGCAGAGCCCTCTTAT  900

seq1  CAGTCTGCAGTCTTTTTGTGCGTCTGGACCATCAGTAGGTGCTGTCAAAC  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCAGTCTTTTTGTGCGTCTGGACCATCAGTAGGTGCTGTCAAAC  950

seq1  TGCATTTTCAGGTATGGTATGAGCAAGAAGGCTAAGGTCTGCACCCAGGT  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTCAGGTATGGTATGAGCAAGAAGGCTAAGGTCTGCACCCAGGT  1000

seq1  ATTGGAGTGGCAATTATAAAACCTAGTGATAGCCAGGCAGTAGTGGCACG  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTGGCAATTATAAAACCTAGTGATAGCCAGGCAGTAGTGGCACG  1050

seq1  TCCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  1100

seq1  CAAGGCCAGCCTGGTCTACAGAGTGAATTC  1100
      ||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCCTGGTCTACAGAGTGAATTC  1130

seq1: chr11_100905590_100906707
seq2: B6Ng01-196D20.g_68_1195

seq1  GAATTCCAAGCCAGGGTGAGCTACATAGTAAGATCATGTCTCGAACAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCAGGGTGAGCTACATAGTAAGATCATGTCTCGAACAATT  50

seq1  AGATGAGTAAAGGGGGCATAATTTAGAACTACCATTTGATGGGACACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTAAAGGGGGCATAATTTAGAACTACCATTTGATGGGACACTTA  100

seq1  CTGGGTTTGTCCTGGTGCCAGCTCATTACTTAGAGAAATAGTCGTAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGTCCTGGTGCCAGCTCATTACTTAGAGAAATAGTCGTAGACC  150

seq1  AATAAGGATCTATTGTTTGGGGGGAAAATGTGTGCTGCTGTTGGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGATCTATTGTTTGGGGGGAAAATGTGTGCTGCTGTTGGAAACAG  200

seq1  TCTGTTTGACTGGTGGGCTTTGTTGTCTCTTACTTTGCAGAAAGGAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGACTGGTGGGCTTTGTTGTCTCTTACTTTGCAGAAAGGAATTC  250

seq1  AGTGTTTCCTCATCGTGGTGGCGATGCTCTGCGTCCCTTGGATGCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCCTCATCGTGGTGGCGATGCTCTGCGTCCCTTGGATGCTTCTG  300

seq1  TTTAAGCCGCTGATCCTTCGCCATCAGTACCTGAGGAAGAAGCATTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCGCTGATCCTTCGCCATCAGTACCTGAGGAAGAAGCATTTGGT  350

seq1  GAGTGTCTGTCTGTGGCTGAAGGTTACTAGACTTTAGACTTTTTCCTCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGTCTGTGGCTGAAGGTTACTAGACTTTAGACTTTTTCCTCGC  400

seq1  CTAAGATCCAGGCAGCGCCTTAGAGGATGTAATTAACTGTGCACACGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATCCAGGCAGCGCCTTAGAGGATGTAATTAACTGTGCACACGTGC  450

seq1  ATGTGTTCCGTTATGGATTTGGGTTACATATGAGCATGAACCCCGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCCGTTATGGATTTGGGTTACATATGAGCATGAACCCCGGGCCT  500

seq1  GCCAACGTCAGAGACACCTGGATCGGAGAGAATAAATCACTATGTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGTCAGAGACACCTGGATCGGAGAGAATAAATCACTATGTTTTTA  550

seq1  CCTTTCCTGGTCGTGATTTTTGTCACGCTCTCGGCAGCAGAGGCCAGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGGTCGTGATTTTTGTCACGCTCTCGGCAGCAGAGGCCAGCCC  600

seq1  TGGGCCCACACGTCTAGATGCGGCATCAGCCAAATATCAAGGTTAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCACACGTCTAGATGCGGCATCAGCCAAATATCAAGGTTAGGAGA  650

seq1  GCTGCAGACAGTGAGCTCACTCGTGTGGTTTGCCTGGGCAGCCACAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGACAGTGAGCTCACTCGTGTGGTTTGCCTGGGCAGCCACAGGAC  700

seq1  TGACCCAAAGACATA-TTTTTTTTAATGAAACTATGACGCTTTCACCAAC  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGACCCAAAGACATATTTTTTTTTAATGAAACTATGACGCTTTCACCAAC  750

seq1  TGACACACCTGGAAAGGATCTGACTTAAAGCACACTGA--TTTTTTTTTT  797
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TGACACACCTGGAAAGGATCTGACTTAAAGCACACTGATTTTTTTTTTTT  800

seq1  TTTTGTTTCTTCTTCTTCTAAGAAGCAGCATATATACACAC-AGGTGTTT  846
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTGTTTCTTCTTCTTCTAAGAAGCAGCATATATACACACAAGGTGTTT  850

seq1  ACTTAACAGATGTGTGTATACCGACTCTACACACAG-ACACACAAAGTTA  895
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTAACAGATGTGTGTATACCGACTCTACACACAGAACACACAAAGTTA  900

seq1  AGCTTGCCAAATGTTCGATACTGCGTGTAATTTCTGGCTATCCCATAATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCAAATGTTCGATACTGCGTGTAATTTCTGGCTATCCCATAATG  950

seq1  CTTACTGCA-TTGCCCGGGAAAACCCAA-GAG-ATC-TTATTGC-ATGAG  990
      ||||||||| ||||||||||||||| || ||| ||| ||||||| |||||
seq2  CTTACTGCATTTGCCCGGGAAAACCTAAGGAGAATCTTTATTGCAATGAG  1000

seq1  TCCCAT-GGCT-GTGAGATGATCCCTCCGTT-GGAGAGCAGC-TGAGTTA  1036
      |||||| |||| |||||||||||| |||||| |||||||||| ||| |||
seq2  TCCCATGGGCTGGTGAGATGATCCTTCCGTTGGGAGAGCAGCTTGAATTA  1050

seq1  CAAGACCC-TCCTTCTCCCTTTTCTGACCATCTTCATCCTTTCATGTGCC  1085
      || ||||| || ||||  ||||||||||||||||||| |||||||||| |
seq2  CAGGACCCTTCGTTCT-TCTTTTCTGACCATCTTCAT-CTTTCATGTG-C  1097

seq1  CTCCATTCGTCTCCCCTCCCTCT-CCCCATCCCT  1118
      || ||||||     ||||||||| | ||||||||
seq2  CTTCATTCG---GTCCTCCCTCTGCTCCATCCCT  1128