BAC Information

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BAC

Clone NameB6Ng01-196E16
Chromosome11 (Build37)
Map Location 80,591,623 - 80,776,078
singlet/doubletdoublet
Overlap geneMyo1d, Tmem98, Spaca3, Accn1
Upstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1
Downstream gene1700071K01Rik, 5530401A14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196E16.bB6Ng01-196E16.g
ACCGA018471GA018472
length1,0471,087
definitionB6Ng01-196E16.b B6Ng01-196E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,591,623 - 80,592,654)(80,775,033 - 80,776,078)
sequence
gaattcacggggactcttgggatagactttctggggacactgggggacta
catataactccgcaacattctatttaggaatactctgtgtatcttgagag
cactaccctaggaaacccggggagtcctagaatacaagcactgaaaactc
ctggaaacggagggccacagacaaggccagtttatggcaggcatgtgtag
tttgcaggccagtgttcctgctccagacacaaggaagcctgacgcagaac
agatgagggctgatgatgcagccctgtttgttagttgatagcgtgattgc
ctaatgcgccaagccctgggtttgatgcctagcactacagaaatcaagtg
cagcagtgcatacctgtactcccagcaggaagtaaaggtaggtggagcaa
aagttcaagttcaccctagccatattgcagaacagaacatatgaaattat
ttgttttgttaatttaaaaattaaaacaggtttttttaaaaattacagaa
ttgtagttgacagtaaaattgaggtaaatatccaaacctaattatgattt
tcaggtttaagtttaaaaagtgatatttggctataaagtttacaagtaac
agacagagcaaagcttccgggaaaacacaaacaaacaaaataaacaagta
agcacacgcttcaagctgaaactccgtttcagtttttttttaaagtcaaa
acactttaatactcagattacatattactgtttgaaaatgaaataattac
gtatagaagactttctaaaataagttcctcttggaagcccattttggggc
attgtgttgtaactaaattctcaagatgtcagtaacacaaaggctccatc
catacataactccttgaaaaaactgaaaccatggacgccttgtcaaattc
agacagtttatcttggctctggcaagtacagcagtctcttcgatgtctgg
gaaacgggctctaattacgtcgcaatgagtaacctaaaaaataggccgtg
tcccgtgatcagaacgcttagggttcactcccatagcaatcttgaaa
gaattccaggtgtgagtggagaaaagggggcagccggtgaggagagagct
gtgagtccaaaacacagcaggcagctgtgggctccaggagggaccacatt
tgcggagctggccagtgtcctgaaaggcatttcagagttctgctcccagg
gcaggttccagggaaaggaatgagatgaatgagtgagcaaaacgccaggc
tacacgaaaccaaaagcctaagagcgcaatcatctatggggctggggaga
tggctcagtgggtagaacacttccttggaaggcatgaggaccctgaagct
cagtagtcatgaccatttgataaagttccaggccagtgagagactttgtc
tcaaacagaaggtggaagacgcctaactaagaaatcatacctgacattgt
cctctgtcctgcacacatgggccatccatccacacacatgtacccccccc
cccccacacacacacctttctgtgttataaggctggattacgaacatttg
tagagttatggctatgtgaaagctaaataaccaattgagctcaaatctat
acctgtattctgagggtggctggaaggcaagcaaagggaggcattccacg
aaagaagccccacgtgcgctcatcctctgtggtaagaactcaggagcaaa
cgtgtcagagttgtatcaccaagaaaatagcaggcaagcagttgttgcct
gtgatgcatgaacacagaaaagatagctcaatgagcgtaaagtagagcct
cggaggggttagctctttagtgggggacgggagtgcagagaatggattcg
ggaaacacgcttttcagtgcagtgcctttgaagcccccacttaactttta
aaattatgaaccatagactgctttggataaatattaaagttaaaattaaa
aaataaccattaattttttaccatagctggaagggcctgaccagccatca
cggagagcagaagttcttaccccccaccattccactcccattaccaaatg
gggacaccaggcctaggatgaggacctgatgctgggtcatgtgtttcctc
tccagcatctctctcggctctccccaggtaaaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80591623_80592654
seq2: B6Ng01-196E16.b_44_1081

seq1  GAATTCACGGGGACTCTTGGGATAGACTTTCTGGGGACACTGGGGGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGGGACTCTTGGGATAGACTTTCTGGGGACACTGGGGGACTA  50

seq1  CATATAACTCCGCAACATTCTATTTAGGAATACTCTGTGTATCTTGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACTCCGCAACATTCTATTTAGGAATACTCTGTGTATCTTGAGAG  100

seq1  CACTACCCTAGGAAACCCGGGGAGTCCTAGAATACAAGCACTGAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCCTAGGAAACCCGGGGAGTCCTAGAATACAAGCACTGAAAACTC  150

seq1  CTGGAAACGGAGGGCCACAGACAAGGCCAGTTTATGGCAGGCATGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACGGAGGGCCACAGACAAGGCCAGTTTATGGCAGGCATGTGTAG  200

seq1  TTTGCAGGCCAGTGTTCCTGCTCCAGACACAAGGAAGCCTGACGCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGCCAGTGTTCCTGCTCCAGACACAAGGAAGCCTGACGCAGAAC  250

seq1  AGATGAGGGCTGATGATGCAGCCCTGTTTGTTAGTTGATAGCGTGATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGGCTGATGATGCAGCCCTGTTTGTTAGTTGATAGCGTGATTGC  300

seq1  CTAATGCGCCAAGCCCTGGGTTTGATGCCTAGCACTACAGAAATCAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCGCCAAGCCCTGGGTTTGATGCCTAGCACTACAGAAATCAAGTG  350

seq1  CAGCAGTGCATACCTGTACTCCCAGCAGGAAGTAAAGGTAGGTGGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGCATACCTGTACTCCCAGCAGGAAGTAAAGGTAGGTGGAGCAA  400

seq1  AAGTTCAAGTTCACCCTAGCCATATTGCAGAACAGAACATATGAAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGTTCACCCTAGCCATATTGCAGAACAGAACATATGAAATTAT  450

seq1  TTGTTTTGTTAATTTAAAAATTAAAACAGGTTTTTTTAAAAATTACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTAATTTAAAAATTAAAACAGGTTTTTTTAAAAATTACAGAA  500

seq1  TTGTAGTTGACAGTAAAATTGAGGTAAATATCCAAACCTAATTATGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTGACAGTAAAATTGAGGTAAATATCCAAACCTAATTATGATTT  550

seq1  TCAGGTTTAAGTTTAAAAAGTGATATTTGGCTATAAAGTTTACAAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTAAGTTTAAAAAGTGATATTTGGCTATAAAGTTTACAAGTAAC  600

seq1  AGACAGAGCAAAGCTTCCGGGAAAACACAAACAAAC-AAATAAACAAGTA  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGACAGAGCAAAGCTTCCGGGAAAACACAAACAAACAAAATAAACAAGTA  650

seq1  AGCACACGCTTCAAGCTGAAACTCCGTTTCAGTTTTTTTTTAAAGTCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACGCTTCAAGCTGAAACTCCGTTTCAGTTTTTTTTTAAAGTCAAA  700

seq1  ACACTTTAATACTCAGATTACATATTACTGTTTGAAAATGAAATAATTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAATACTCAGATTACATATTACTGTTTGAAAATGAAATAATTAC  750

seq1  GTATAGAAGACTTTCTAAAATAAGTTCCTCTTGGAAGCCCATTTTGGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAGACTTTCTAAAATAAGTTCCTCTTGGAAGCCCATTTTGGGGC  800

seq1  ATTGTGTTGTAACTAAATTCTCAAAGATGTCAGTAACACAAAGGCTCCAT  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGTGTTGTAACTAAATTCTC-AAGATGTCAGTAACACAAAGGCTCCAT  849

seq1  CCATACATAACTCCTTGAAAAAACTGAAACCATGGACGCCTTGTCAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATAACTCCTTGAAAAAACTGAAACCATGGACGCCTTGTCAAATT  899

seq1  CAGACAGTTTATCTTGGCACTGGCAAGTACAGCAGTCTCTTCGATGTCT-  948
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  CAGACAGTTTATCTTGGCTCTGGCAAGTACAGCAGTCTCTTCGATGTCTG  949

seq1  GGAAACGGG-TCTAATTACGTCG-AATGAGTAA-CTAAAAAATAGCCCGT  995
      ||||||||| ||||||||||||| ||||||||| ||||||||||| ||||
seq2  GGAAACGGGCTCTAATTACGTCGCAATGAGTAACCTAAAAAATAGGCCGT  999

seq1  GTCCCG-GAACAGACAGCTTAGGGTTCACT-CCATAGCA  1032
      |||||| || ||||  |||||||||||||| ||||||||
seq2  GTCCCGTGATCAGAACGCTTAGGGTTCACTCCCATAGCA  1038

seq1: chr11_80775033_80776078
seq2: B6Ng01-196E16.g_72_1158 (reverse)

seq1  AGAGTTTTTCCTGG---GAGCC---AGAGATGCTGGA---GAAAC-CATG  40
      |||||||| |||||   |||||   ||||||||||||   ||||| ||||
seq2  AGAGTTTTACCTGGGGAGAGCCGAGAGAGATGCTGGAGAGGAAACACATG  50

seq1  --GCAACCTCAG--TCTCATTCTAG--CT-GTGT-CCCATTT-GTAATGG  81
         || | ||||   ||||| ||||  || |||| ||||||| |||||||
seq2  ACCCAGCATCAGGTCCTCATCCTAGGCCTGGTGTCCCCATTTGGTAATGG  100

seq1  G-GTGG-ATG--TGGGGGTAGGAAC-TCTGCTCTCCCTGATGGCTGCTCA  126
      | |||| |||   ||||||| |||| |||||||||| ||||||||| |||
seq2  GAGTGGAATGGTGGGGGGTAAGAACTTCTGCTCTCCGTGATGGCTGGTCA  150

seq1  GG-CCTTCCAGCTATGGT-AAAAATTTATGGTTATTTTT--AATTTAACT  172
      || ||||||||||||||| ||||||| ||||||||||||  | |||||||
seq2  GGCCCTTCCAGCTATGGTAAAAAATTAATGGTTATTTTTTAATTTTAACT  200

seq1  TTTATATTTAT-CAAAGCAGTCTAT-GTACATAATTTTAAAAGTTAAGT-  219
      || |||||||| ||||||||||||| || |||||||||||||||||||| 
seq2  TTAATATTTATCCAAAGCAGTCTATGGTTCATAATTTTAAAAGTTAAGTG  250

seq1  GGTGCTTC-AAGGCACTG-ACTGAAAAGCGTGTTTCCCG-ATCCA-TCTC  265
      || ||||| ||||||||| |||||||||||||||||||| ||||| ||||
seq2  GGGGCTTCAAAGGCACTGCACTGAAAAGCGTGTTTCCCGAATCCATTCTC  300

seq1  TGCACT-CCGTTCCCCACT-AAGAGCT-ACCCCTCCGAGGCTCTACTTTA  312
      |||||| |||| ||||||| ||||||| ||||||||||||||||||||||
seq2  TGCACTCCCGTCCCCCACTAAAGAGCTAACCCCTCCGAGGCTCTACTTTA  350

seq1  CGCTCATTGAGCTATCTTTTCTGTGTTCATGCATCACAGGCAACAACTGC  362
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCATTGAGCTATCTTTTCTGTGTTCATGCATCACAGGCAACAACTGC  400

seq1  TTGCCTGCTA-TTTCTTGGTGGTACAACTCTGACACGTTTGCTCCTGAGT  411
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TTGCCTGCTATTTTCTTGGTGATACAACTCTGACACGTTTGCTCCTGAGT  450

seq1  TCTTACCACAGAGGATGAGCGCACGT-GGGCTTCTTTCGTGGAATGCCTC  460
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTACCACAGAGGATGAGCGCACGTGGGGCTTCTTTCGTGGAATGCCTC  500

seq1  CCTTTGCTTGCCTTCCAGCCACCCTCAGAATACAGGTATAGATTTGAGCT  510
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTGCCTTCCAGCCACCCTCAGAATACAGGTATAGATTTGAGCT  550

seq1  CAATTGGTTATTTAGCTTTCACATAGCCATAACTCTACAAATGTTCGTAA  560
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGTTATTTAGCTTTCACATAGCCATAACTCTACAAATGTTCGTAA  600

seq1  TCCAGCCTTATAACACAGAAAGGTGTGTGTGT-GGGGGGGGGGGGTACAT  609
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCAGCCTTATAACACAGAAAGGTGTGTGTGTGGGGGGGGGGGGGTACAT  650

seq1  GTGTGTGGATGGATGGCCCATGTGTGCAGGACAGAGGACAATGTCAGGTA  659
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGATGGATGGCCCATGTGTGCAGGACAGAGGACAATGTCAGGTA  700

seq1  TGATTTCTTAGTTAGGCGTCTTCCACCTTCTGTTTGAGACAAAGTCTCTC  709
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTTAGTTAGGCGTCTTCCACCTTCTGTTTGAGACAAAGTCTCTC  750

seq1  ACTGGCCTGGAACTTTATCAAATGGTCATGACTACTGAGCTTCAGGGTCC  759
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTGGAACTTTATCAAATGGTCATGACTACTGAGCTTCAGGGTCC  800

seq1  TCATGCCTTCCAAGGAAGTGTTCTACCCACTGAGCCATCTCCCCAGCCCC  809
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTTCCAAGGAAGTGTTCTACCCACTGAGCCATCTCCCCAGCCCC  850

seq1  ATAGATGATTGCGCTCTTAGGCTTTTGGTTTCGTGTAGCCTGGCGTTTTG  859
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGATTGCGCTCTTAGGCTTTTGGTTTCGTGTAGCCTGGCGTTTTG  900

seq1  CTCACTCATTCATCTCATTCCTTTCCCTGGAACCTGCCCTGGGAGCAGAA  909
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCATTCATCTCATTCCTTTCCCTGGAACCTGCCCTGGGAGCAGAA  950

seq1  CTCTGAAATGCCTTTCAGGACACTGGCCAGCTCCGCAAATGTGGTCCCTC  959
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATGCCTTTCAGGACACTGGCCAGCTCCGCAAATGTGGTCCCTC  1000

seq1  CTGGAGCCCACAGCTGCCTGCTGTGTTTTGGACTCACAGCTCTCTCCTCA  1009
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCCACAGCTGCCTGCTGTGTTTTGGACTCACAGCTCTCTCCTCA  1050

seq1  CCGGCTGCCCCCTTTTCTCCACTCACACCTGGAATTC  1046
      |||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGCCCCCTTTTCTCCACTCACACCTGGAATTC  1087