BAC Information

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BAC

Clone NameB6Ng01-196F15
Chromosome11 (Build37)
Map Location 107,023,138 - 107,156,981
singlet/doubletdoublet
Overlap geneNol11, LOC671692, Pitpnc1
Upstream gene2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899
Downstream genePsmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196F15.bB6Ng01-196F15.g
ACCGA018517GA018518
length461801
definitionB6Ng01-196F15.b B6Ng01-196F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,023,138 - 107,023,604)(107,156,185 - 107,156,981)
sequence
aagggtagcctgggttagagtaagattctcaaaacaaaaacagaagccta
cacgcatttaatcccagcacttgggaggcagaggcaggcagatttccgag
ttagagaccagcctggtctacagagtgagttccaggacagccagggctac
acagagaaaccttgtcttgaaaaacaaaacaaaaccagcttacacgagga
aagggtttatttggaaagtcaggacaggaactaaacacagcaacctggct
gcaggaactgaagcagagacctgggaggaaggatgcttattggcttgttt
cctctggcttgatcctctagctcagtgggtctcaactttcctaatgctga
gaccctttaatatagttcttcacgttgtggcgaacccaaccataaaatta
tttttttgctgcttcataattgtaattttgctactgttatgaatcaagat
gtaggggactg
attcattcattcatattcattcattcactcactcactcactcacgaattc
atccattcattattcagcaagggcgtattaaacaccttctgtttatatca
ccacatgagtcacttggaggcaggaatggtgggtgtgatgatacatacct
gtattcctagcactgggtatggggcggcgtagggggaggcgccagggaag
aagatgtcaagtttgagactagcctggaaggtctcaaagcaaaggaaaaa
aaaacaaaccaggctcatttcccagctttcggatgcctcctgtttaccta
ggggaccaagatcaacatttctcatagccaaaaccgtgaacacactagac
gacctcccagtgtgcaaggagttgtggccggttacgggagcagtcggagg
gatgctttctataaatactactgtgggcagggatgacctgcctgatgcct
agttacgtctgttccttgagtattagctcttcaggtgatggcaaactgct
ttgttctggtttggtttggtctcctggtcacctattcataggtatatgta
tgtgatggtgtgctcaagtgtgtgtctgcttagttatgaatagtgcccaa
gtgcatgagtgtgtgtgtgtgtgagagagagagagagagagagagagaga
gactatgtgtatatggaggcctgaggtggatgccagttattttcccttga
ttgctttccaccttattctttgaggcagcatctcctcaattgaacctgga
gctacctgatatagctagccctggccagctccttgttctggggaatcttg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107023138_107023604
seq2: B6Ng01-196F15.b_46_512

seq1  GAATTCAAGGGTAGCCTGGGTTAGAGTAAGATTCTCAAAACAAAAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGTAGCCTGGGTTAGAGTAAGATTCTCAAAACAAAAACAGA  50

seq1  AGCCTACACGCATTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACACGCATTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATT  100

seq1  TCCGAGTTAGAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTTAGAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  150

seq1  GGCTACACAGAGAAACCTTGTCTTGAAAAACAAAACAAAACCAGCTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAAACCTTGTCTTGAAAAACAAAACAAAACCAGCTTACA  200

seq1  CGAGGAAAGGGTTTATTTGGAAAGTCAGGACAGGAACTAAACACAGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAAAGGGTTTATTTGGAAAGTCAGGACAGGAACTAAACACAGCAAC  250

seq1  CTGGCTGCAGGAACTGAAGCAGAGACCTGGGAGGAAGGATGCTTATTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCAGGAACTGAAGCAGAGACCTGGGAGGAAGGATGCTTATTGGC  300

seq1  TTGTTTCCTCTGGCTTGATCCTCTAGCTCAGTGGGTCTCAACTTTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTCTGGCTTGATCCTCTAGCTCAGTGGGTCTCAACTTTCCTAA  350

seq1  TGCTGAGACCCTTTAATATAGTTCTTCACGTTGTGGCGAACCCAACCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGACCCTTTAATATAGTTCTTCACGTTGTGGCGAACCCAACCATA  400

seq1  AAATTATTTTTTTGCTGCTTCATAATTGTAATTTTGCTACTGTTATGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTTTTGCTGCTTCATAATTGTAATTTTGCTACTGTTATGAAT  450

seq1  CAAGATGTAGGGGACTG  467
      |||||||||||||||||
seq2  CAAGATGTAGGGGACTG  467

seq1: chr11_107156185_107156981
seq2: B6Ng01-196F15.g_70_870 (reverse)

seq1  ACAAGATT-CCCAGAACAAGGAGCTGGCCA-GGCTAGCTATATCAGGTAG  48
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ACAAGATTCCCCAGAACAAGGAGCTGGCCAGGGCTAGCTATATCAGGTAG  50

seq1  CTCCAGGTTCAATTGA-GAGATGCTGCCTCAAAGAATAAGGTGGAAAGCA  97
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCCAGGTTCAATTGAGGAGATGCTGCCTCAAAGAATAAGGTGGAAAGCA  100

seq1  ATC-AGGGAAAATAACTGGCATCCACCTCAGGCCTCCATATACACATAGT  146
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGAAAATAACTGGCATCCACCTCAGGCCTCCATATACACATAGT  150

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACTCATGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACTCATGCA  200

seq1  CTTGGGCACTATTCATAACTAAGCAGACACACACTTGAGCACACCATCAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCACTATTCATAACTAAGCAGACACACACTTGAGCACACCATCAC  250

seq1  ATACATATACCTATGAATAGGTGACCAGGAGACCAAACCAAACCAGAACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACCTATGAATAGGTGACCAGGAGACCAAACCAAACCAGAACA  300

seq1  AAGCAGTTTGCCATCACCTGAAGAGCTAATACTCAAGGAACAGACGTAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTGCCATCACCTGAAGAGCTAATACTCAAGGAACAGACGTAAC  350

seq1  TAGGCATCAGGCAGGTCATCCCTGCCCACAGTAGTATTTATAGAAAGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCAGGCAGGTCATCCCTGCCCACAGTAGTATTTATAGAAAGCAT  400

seq1  CCCTCCGACTGCTCCCGTAACCGGCCACAACTCCTTGCACACTGGGAGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCGACTGCTCCCGTAACCGGCCACAACTCCTTGCACACTGGGAGGT  450

seq1  CGTCTAGTGTGTTCACGGTTTTGGCTATGAGAAATGTTGATCTTGGTCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAGTGTGTTCACGGTTTTGGCTATGAGAAATGTTGATCTTGGTCCC  500

seq1  CTAGGTAAACAGGAGGCATCCGAAAGCTGGGAAATGAGCCTGGTTTGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAAACAGGAGGCATCCGAAAGCTGGGAAATGAGCCTGGTTTGTTT  550

seq1  TTTTTTCCTTTGCTTTGAGACCTTCCAGGCTAGTCTCAAACTTGACATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTTTGCTTTGAGACCTTCCAGGCTAGTCTCAAACTTGACATCT  600

seq1  TCTTCCCTGGCGCCTCCCCCTACGCCGCCCCATACCCAGTGCTAGGAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTGGCGCCTCCCCCTACGCCGCCCCATACCCAGTGCTAGGAATA  650

seq1  CAGGTATGTATCATCACACCCACCATTCCTGCCTCCAAGTGACTCATGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGTATCATCACACCCACCATTCCTGCCTCCAAGTGACTCATGTG  700

seq1  GTGATATAAACAGAAGGTGTTTAATACGCCCTTGCTGAATAATGAATGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATAAACAGAAGGTGTTTAATACGCCCTTGCTGAATAATGAATGGA  750

seq1  TGAATTCGTGAGTGAGTGAGTGAGTGAATGAATGAATATGAATGAATGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCGTGAGTGAGTGAGTGAGTGAATGAATGAATATGAATGAATGAA  800

seq1  T  797
      |
seq2  T  801