BAC Information

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BAC

Clone NameB6Ng01-197A08
Chromosome11 (Build37)
Map Location 79,929,663 - 79,930,808
singlet/doubletsinglet
Overlap geneAtad5
Upstream geneKsr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3
Downstream gene1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197A08.bB6Ng01-197A08.g
ACCGA019005GA019006
length1,1281,146
definitionB6Ng01-197A08.b B6Ng01-197A08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttttcacaggggtcacctaagatcatcagaaaacaaagatattt
acattatgatttataacagtagcaacattacagctacaaagtagcaatga
agataattttatggttggggggggtcaccataatatgagaaactgtatta
aagggtcaaagcagcaggaaggttgagaacgactgtgctgttagatattt
gacctcactgtgaatcaggagattatgttacttgctgacataaacctgtt
tttagttgtagtatggatcagcctttagcacacacctttaatccctctgg
ctgtacctcagacacacctttagtacacatctttaacccgtacaaggaag
gtaaagttagtttgtagaaggaagcagccacgtttgaaagtgatatctga
ttgagtgatgaatctgagaaagatttgacaggatagcataagctacttaa
aggacaaggcagaaagagagagagagagaggaagggagttttacccaaac
agttatgtcatagagaggttgcagagagagaacaagctaacgcaggtgaa
gatagaacaagccagaggaggatccagaaggttagaacaaattgcccacg
ttagtatgtagccaagcagagcaattcaggcagaagctgagagaagccgg
tttgaatcagttagcttagagaggcatttgagccagaacagttgagttga
attagccagcaagaattcagaaagaactacaaaggatgagtgtattcagc
agtaagtctcagaggctgaaaacattctagaactaggtaagattgtatgg
aagctagaagcaaaagttacctttatatcaccagttagaacaatgaacgt
aatggagaaacagctgcagcaatcaggagcccggcctgaccaggttaggt
aagatggctctgaatcataaatacagccaacagaacagaggactgggaga
gggcagtcagtgctaggtttcaaaggtcttgactacagtgccacagagat
tacaggcaagggaaatgaacagtgtgacttcagtagctagacagcacctg
atgacagtcactagagtcagagtatgctagacctgtgtgaactactgagt
tacttagcagtttcctagtgaatgactt
gaattcagtcaggcaaggtggcacatgcttttaattccagcatttgggag
gcatgtggaccactatgagtttgaggccagcttggtttaaatagtgagtt
ctaggccatccagggctacataatgagagcgtatctctgaaagaaaagaa
aacaaaaatctaaataaaaaagggatgaatttgccattcctagatttccg
tgtgtctcaagatttgtttcccatggctccttcctcatgagtacttaatt
ttagacttggcagaagataagatggttctgcagatttccgagctctctgc
acagctatctcaacttgtgtgttctctcattccctgcagtagtcttctta
ggacttgtttcctttcccactgcagcttaggaattctttcaaagcaataa
gctgggcagtcttcaagattagctgttcatgttgtccctcaaggattgtc
ctttgttgggtggcagccaacaacttagaaagcatttcatacaggatgtc
agctttttattgttatttattgttttacatggaaaattaaatccagtctc
agatgcttttatcttgcctagaagcagaatcacacccttttcctctggtg
gttatatctccccctctggctggcagggaactgttccagttggtctgtag
ttttttgattggcctctggaatcactggatctcctgccattctagtgtgc
cagatagccctaatcttagggttggctggaggtgattcttgttttggaag
ttatttttttaatttcaatgtgagtatctttgaaattaaaggtagcacat
aatgccaggtatggtagttcatacctgaaatatgagcacatatttgagac
tgagatggagggctgccatgagttcaaagctagccttggtttgcaaagtg
agaaactgtcttataaaggcaaagaagcagtcagacctaatggtataatg
gatagaatgctttactagaatacagtggggtggtgataagtgattcctct
agtccagaacagcagctcatgtttatcttgtgctgtacatctagttcaag
acagtcctggtttcatgagacctatcttaaggacttagttatcgaacagg
tagtaataaattttagaataggaattcgttggcctgtgtctaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79929663_79930808
seq2: B6Ng01-197A08.g_69_1214

seq1  GAATTCAGTCAGGCAAGGTGGCACATGCTTTTAATTCCAGCATTTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGGCAAGGTGGCACATGCTTTTAATTCCAGCATTTGGGAG  50

seq1  GCATGTGGACCACTATGAGTTTGAGGCCAGCTTGGTTTAAATAGTGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGACCACTATGAGTTTGAGGCCAGCTTGGTTTAAATAGTGAGTT  100

seq1  CTAGGCCATCCAGGGCTACATAATGAGAGCGTATCTCTGAAAGAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCATCCAGGGCTACATAATGAGAGCGTATCTCTGAAAGAAAAGAA  150

seq1  AACAAAAATCTAAATAAAAAAGGGATGAATTTGCCATTCCTAGATTTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATCTAAATAAAAAAGGGATGAATTTGCCATTCCTAGATTTCCG  200

seq1  TGTGTCTCAAGATTTGTTTCCCATGGCTCCTTCCTCATGAGTACTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAAGATTTGTTTCCCATGGCTCCTTCCTCATGAGTACTTAATT  250

seq1  TTAGACTTGGCAGAAGATAAGATGGTTCTGCAGATTTCCGAGCTCTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTGGCAGAAGATAAGATGGTTCTGCAGATTTCCGAGCTCTCTGC  300

seq1  ACAGCTATCTCAACTTGTGTGTTCTCTCATTCCCTGCAGTAGTCTTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATCTCAACTTGTGTGTTCTCTCATTCCCTGCAGTAGTCTTCTTA  350

seq1  GGACTTGTTTCCTTTCCCACTGCAGCTTAGGAATTCTTTCAAAGCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTTTCCTTTCCCACTGCAGCTTAGGAATTCTTTCAAAGCAATAA  400

seq1  GCTGGGCAGTCTTCAAGATTAGCTGTTCATGTTGTCCCTCAAGGATTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGTCTTCAAGATTAGCTGTTCATGTTGTCCCTCAAGGATTGTC  450

seq1  CTTTGTTGGGTGGCAGCCAACAACTTAGAAAGCATTTCATACAGGATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGGGTGGCAGCCAACAACTTAGAAAGCATTTCATACAGGATGTC  500

seq1  AGCTTTTTATTGTTATTTATTGTTTTACATGGAAAATTAAATCCAGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTATTGTTATTTATTGTTTTACATGGAAAATTAAATCCAGTCTC  550

seq1  AGATGCTTTTATCTTGCCTAGAAGCAGAATCACACCCTTTTCCTCTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTTTATCTTGCCTAGAAGCAGAATCACACCCTTTTCCTCTGGTG  600

seq1  GTTATATCTCCCCCTCTGGCTGGCAGGGAACTGTTCCAGTTGGTCTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATCTCCCCCTCTGGCTGGCAGGGAACTGTTCCAGTTGGTCTGTAG  650

seq1  TTTTTTGATTGGCCTCTGGAATCACTGGATCTCCTGCCATTCTAGTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGATTGGCCTCTGGAATCACTGGATCTCCTGCCATTCTAGTGTGC  700

seq1  CAGATAGCCCTAATCTTAGGGTTGGCTGGAGGTGATTCTTGTTTTGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCCCTAATCTTAGGGTTGGCTGGAGGTGATTCTTGTTTTGGAAG  750

seq1  TTATTTTTTTAATTTCAATGTGAGTATC-TTGAAATTAAAGGTAGCACAT  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATTTTTTTAATTTCAATGTGAGTATCTTTGAAATTAAAGGTAGCACAT  800

seq1  AATGCCAGGTATGGTAGTTCATACCTGAAATATGAGCACATATTTGAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGTATGGTAGTTCATACCTGAAATATGAGCACATATTTGAGAC  850

seq1  TGAGATGGAGGGCTGCCATGAGTTCAAAGCTAGCCTTGG-TTGCAAAGTG  898
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAGATGGAGGGCTGCCATGAGTTCAAAGCTAGCCTTGGTTTGCAAAGTG  900

seq1  AGAAACTGTCTTATAAAGGCAAAGAAGCAGTCAGA-CTTATGGTATAATG  947
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  AGAAACTGTCTTATAAAGGCAAAGAAGCAGTCAGACCTAATGGTATAATG  950

seq1  GATAGAATGCTTAACTAGAATACAGTGGG--TGTGAT-AGTGATTCCTCT  994
      |||||||||||| ||||||||||||||||   ||||| ||||||||||||
seq2  GATAGAATGCTTTACTAGAATACAGTGGGGTGGTGATAAGTGATTCCTCT  1000

seq1  AGTCCCAGAACAGCAGCTCAAGGTTATCTGTGGCTGTACATCTAGTTCAA  1044
      ||| |||||||||||||||| | ||||||   ||||||||||||||||||
seq2  AGT-CCAGAACAGCAGCTCATGTTTATCTTGTGCTGTACATCTAGTTCAA  1049

seq1  GGACAGTCTGGGTTTCATGAGACCCTATCTAAGGGGACTTAGGTATCAAA  1094
       |||||||  |||||||||||| ||||||| |  |||||||| |||| ||
seq2  -GACAGTCCTGGTTTCATGAGA-CCTATCTTA-AGGACTTAGTTATCGAA  1096

seq1  ACAGTAGTATATAATTTTTAAGATTAGTAA-TCCTTTGCCTGTGTCAAAA  1143
         |||||| |||| |||| ||| ||| || || || |||||||||  ||
seq2  CAGGTAGTA-ATAAATTTT-AGAATAGGAATTCGTTGGCCTGTGTC-TAA  1143

seq1  ATG  1146
      |||
seq2  ATG  1146