BAC Information

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BAC

Clone NameB6Ng01-197D03
Chromosome11 (Build37)
Map Location 114,530,794 - 114,656,193
singlet/doubletdoublet
Overlap geneRpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik
Upstream geneD11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik
Downstream geneGpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197D03.bB6Ng01-197D03.g
ACCGA019125GA019126
length2471,073
definitionB6Ng01-197D03.b B6Ng01-197D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,655,947 - 114,656,193)(114,530,794 - 114,531,860)
sequence
aaggctagcctgaactataagagaccccatctcaaaaaactaaaaagaga
acaaacaaacaaacaaagacagaaagaaacgctatgcctgctgtccctgg
ccctgagctccacctggtcattcccgcccaggtctttagggctggctgta
ttcctttgtctctggctggttccaggctgctcacttgtgcatttatttat
ttttaaaattgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattccggaggcagggacaaagggatggggaaatgctaggctctccttg
gttacattgtctcgaaaatagattaaaacaagcaggttcaaagttgtttg
tcggctcctgctgctttctgtattgttctttcatacacgaagagggaatt
gtctgctacttaaaggatgtttggggaggatgtgcctagcgagaaacctt
gggtgatgttatcttcccatggcagctaaaaagaggtctggtcttctact
gtgtgagatagccctatgggccttccttttcctccccagatcggacttat
aaacatcagataatgagcggaagtagacctaggtgggcaggaagagcctt
tgcaaggtccttaggtgtactctgtcacgtcagacaggctgttgcctctg
atgtggttgtctgtgggccggcggccaccggcctggcgaatgtctcctgc
tggtgggcacagtggggtttgctggtgttttccatccggcctgtaacatt
tggcactgccttctcaagtctcagctcggccacgggccacagttcttttc
tcctgtttaactttaagagtgtggaatcagaggtcatgcctccagattgc
tgaggtcaacctagcaggcctgtcagttccttaattagttaagaaaatga
atcaagcgtatgggttaggagaaatgcctttggacccaatttctggtggg
tttggttttgttttgtttagaaataggctatatggatctggaataacatt
ggcactcaccttgtagcccaagctggcctcagatctagagctcagggagt
ctctctccgcctccaagtgttcgcggatttgtagacctgggcccgatatt
tctgacttgttttcccccttatgtttttgtttattgtatatgtgcacatg
tggaggccagagaggatcttgaaggttgttggttgtccttatggggcaga
tcttcaaggaacagactggggtcattgggtttgaacctgggctgtcttta
cccactcaactattacactgggcctccttctaacctggaactccctgggt
ctccttggggcctggtatacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114655947_114656193
seq2: B6Ng01-197D03.b_47_293 (reverse)

seq1  ACACACACACACACACACACACACACACACACAAATCAATTTTAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACAAATCAATTTTAAAAATA  50

seq1  AATAAATGCACAAGTGAGCAGCCTGGAACCAGCCAGAGACAAAGGAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCACAAGTGAGCAGCCTGGAACCAGCCAGAGACAAAGGAATAC  100

seq1  AGCCAGCCCTAAAGACCTGGGCGGGAATGACCAGGTGGAGCTCAGGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCCTAAAGACCTGGGCGGGAATGACCAGGTGGAGCTCAGGGCCA  150

seq1  GGGACAGCAGGCATAGCGTTTCTTTCTGTCTTTGTTTGTTTGTTTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCAGGCATAGCGTTTCTTTCTGTCTTTGTTTGTTTGTTTGTTCT  200

seq1  CTTTTTAGTTTTTTGAGATGGGGTCTCTTATAGTTCAGGCTAGCCTT  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGTTTTTTGAGATGGGGTCTCTTATAGTTCAGGCTAGCCTT  247

seq1: chr11_114530794_114531860
seq2: B6Ng01-197D03.g_64_1136

seq1  GAATTCCGGAGGCAGGGACAAAGGGATGGGGAAATGCTAGGCTCTCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGAGGCAGGGACAAAGGGATGGGGAAATGCTAGGCTCTCCTTG  50

seq1  GTTACATTGTCTCGAAAATAGATTAAAACAAGCAGGTTCAAAGTTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTGTCTCGAAAATAGATTAAAACAAGCAGGTTCAAAGTTGTTTG  100

seq1  TCGGCTCCTGCTGCTTTCTGTATTGTTCTTTCATACACGAAGAGGGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCCTGCTGCTTTCTGTATTGTTCTTTCATACACGAAGAGGGAATT  150

seq1  GTCTGCTACTTAAAGGATGTTTGGGGAGGATGTGCCTAGCGAGAAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTACTTAAAGGATGTTTGGGGAGGATGTGCCTAGCGAGAAACCTT  200

seq1  GGGTGATGTTATCTTCCCATGGCAGCTAAAAAGAGGTCTGGTCTTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGTTATCTTCCCATGGCAGCTAAAAAGAGGTCTGGTCTTCTACT  250

seq1  GTGTGAGATAGCCCTATGGGCCTTCCTTTTCCTCCCCAGATCGGACTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGATAGCCCTATGGGCCTTCCTTTTCCTCCCCAGATCGGACTTAT  300

seq1  AAACATCAGATAATGAGCGGAAGTAGACCTAGGTGGGCAGGAAGAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAGATAATGAGCGGAAGTAGACCTAGGTGGGCAGGAAGAGCCTT  350

seq1  TGCAAGGTCCTTAGGTGTACTCTGTCACGTCAGACAGGCTGTTGCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTCCTTAGGTGTACTCTGTCACGTCAGACAGGCTGTTGCCTCTG  400

seq1  ATGTGGTTGTCTGTGGGCCGGCGGCCACCGGCCTGGCGAATGTCTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGTCTGTGGGCCGGCGGCCACCGGCCTGGCGAATGTCTCCTGC  450

seq1  TGGTGGGCACAGTGGGGTTTGCTGGTGTTTTCCATCCGGCCTGTAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGCACAGTGGGGTTTGCTGGTGTTTTCCATCCGGCCTGTAACATT  500

seq1  TGGCACTGCCTTCTCAAGTCTCAGCTCGGCCACGGGCCACAGTTCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGCCTTCTCAAGTCTCAGCTCGGCCACGGGCCACAGTTCTTTTC  550

seq1  TCCTGTTTAACTTTAAGAGTGTGGAATCAGAGGTCATGCCTCCAGATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTAACTTTAAGAGTGTGGAATCAGAGGTCATGCCTCCAGATTGC  600

seq1  TGAGGTCAACCTAGCAGGCCTGTCAGTTCCTTAATTAGTTAAGAAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAACCTAGCAGGCCTGTCAGTTCCTTAATTAGTTAAGAAAATGA  650

seq1  ATCAAGCGTATGGGTTAGGAGAAATGCCTTTGGACCCAATTTCTGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCGTATGGGTTAGGAGAAATGCCTTTGGACCCAATTTCTGGTGGG  700

seq1  TTTGGTTTTGTTTTGTTTAGAAATAGGCTATATGGATCTGGAATAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGTTTTGTTTAGAAATAGGCTATATGGATCTGGAATAACATT  750

seq1  GGCACTCACCTTGTAGCCCAAGCTGGCCTCAGATCTAGAGCTCAGGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCACCTTGTAGCCCAAGCTGGCCTCAGATCTAGAGCTCAGGGAGT  800

seq1  CTCTCTCCGCCTCCCAAGTGTTCGCGGA-TTGTAGACCTGGG-CCGATAT  848
      |||||||||||| ||||||||||||||| ||||||||||||| |||||||
seq2  CTCTCTCCGCCT-CCAAGTGTTCGCGGATTTGTAGACCTGGGCCCGATAT  849

seq1  TTCTGACTTGTTTTCCCCCTTATGTTTTTGTTTATTGTATATGTGCACAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTGTTTTCCCCCTTATGTTTTTGTTTATTGTATATGTGCACAT  899

seq1  GTGGAGGCCAGAGAGGATCTTG-AGGGTGTTGGTTGTCC-TATGGGGCAG  946
      |||||||||||||||||||||| ||| |||||||||||| ||||||||||
seq2  GTGGAGGCCAGAGAGGATCTTGAAGGTTGTTGGTTGTCCTTATGGGGCAG  949

seq1  ATC-TCAGGAACCAGACTGGGGTCATTGGGTTTGACACT-GGCTGTCTTT  994
      ||| ||| | | |||||||||||||||||||||||  || ||||||||||
seq2  ATCTTCAAGGAACAGACTGGGGTCATTGGGTTTGAACCTGGGCTGTCTTT  999

seq1  ACCCACCCAACTATTACACT-GGCTTCTCTCTAACCTTGAACTTCCTGGG  1043
      |||||| ||||||||||||| ||| ||  |||||||| ||||| ||||||
seq2  ACCCACTCAACTATTACACTGGGCCTCCTTCTAACCTGGAACTCCCTGGG  1049

seq1  TCTCC-TGGGGGCTGGTATTACAGA  1067
      ||||| ||||| |||||| ||||||
seq2  TCTCCTTGGGGCCTGGTA-TACAGA  1073