BAC Information

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BAC

Clone NameB6Ng01-197D06
Chromosome11 (Build37)
Map Location 86,137,494 - 86,267,410
singlet/doubletdoublet
Overlap geneThrap1
Upstream genePpm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2
Downstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197D06.bB6Ng01-197D06.g
ACCGA019131GA019132
length1,207623
definitionB6Ng01-197D06.b B6Ng01-197D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,266,215 - 86,267,410)(86,137,494 - 86,138,116)
sequence
gaattcactatggagtcaaaggtagttttgaactgtcgatcctcgagctt
ctgccactgagtgtagcaccacaggcttattccaccaaacacattatgtg
tggtgctgggtggaacctggggcctctctatgcttacccagtactctccc
aacacccctggctccatggcgaattcgtttctctcactcgaatctgactt
acaaatgattatcccatcagacgaccatctatagagaacggaggatgggg
aattctgatcacactccactcacgcccatagccttaatggaaatgctagg
tttgtagatgattattttcatatttgagcataagagagcaacttaaatca
attatgtgtaatatcatattaatccaatgtagtatacctttaagcgaagg
aaagtactagattgccaagaactatcaaatttatgattccttttatatca
gactttttacaaggaagcattctataaagattgtgtagaacttggatgcc
gcagaatgcaggttatagattttctgtctgtaaatcaacaatttgatctt
tatatggacacatttgactatataagccttgcaataaatttgaatttaaa
actatgtgggttttatattcttttcaatagaactataaaatctaagtgca
gaagtcatcaattcagcctcatgcctccaggcagctccataattaagtca
tcccaggcaggtaatcacgcctgccgagggaagtctaccgctcagcaatc
cgttcttgtagtgatctcccacccgaaactccttgattgcatctaattct
ggtgttttcctttcgctctgatcccattccatctgacttgggttggagct
tagctcgtggaaaagcttctgcagcaagtcccctcaggccaccatttcat
tcaccctcgtcctgatgagaagacaccacttcgcttcacagccatcatta
gtgctgtttaacacatgataactgtcttcttttcttcttgtttcatcaag
agtataatgatcttgccattgcattggacattttaattgatatctaatat
atggccacagaatataaacaaagcaaaaggtgacttccctgtacggatct
atattctgactataccagctagaagtcgttttggaattcacaggagggga
gctggaagagagctcagtagcctaaagagagccaaatgtgccttggacag
gcatggt
gaattccagtttcagtgataccagataccctcttctgacctctactggta
ccaggtacatgcatggtacaaacacacatgcaggcaaaacactcacaaca
cataaattaattaatctaacttttaaaaaaaatactttgttcatgtagat
gtatattaggtttcctgatttttttctaatgaagcagtggtttaaaatgt
atctaaagtgaattatttttttattaagtagtactttaaaatgtatctaa
agttaggctcacataaataaaaccactttggagttcatttattgtttctc
taggagctggagatcaaaccatctcttctccatgccaggcaaatattcta
ccaatgagtcacatccttaagctctagcagtagtaacgcttaagtataaa
tgagaactgacataaattttgagaatctacttcctacaaggcaataatag
tgatatccaagcggggtgtggtggcacatgcctttaattccagtactcag
gaggcaggcgtccaagttcagggccagctttcagggccagcttggtctac
agagcattccaagacaggaactacatagagaaaaccttggaggacatggg
ggacgggggtgggggtagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86266215_86267410
seq2: B6Ng01-197D06.b_47_1253 (reverse)

seq1  ACCATGCCTGTCCCAGCAACAATTTTGCT-TCTCTTAGCTACTGAGCTCT  49
      ||||||||||||| ||  || |||| ||| ||| |  |||||||||||||
seq2  ACCATGCCTGTCCAAGGCAC-ATTTGGCTCTCTTTAGGCTACTGAGCTCT  49

seq1  CTT-CAGCTCCC--TCTGTGAATTC--AAACGAC-TCTAGCCTGGTATAG  93
      ||| ||||||||   ||||||||||  ||||||| ||||| |||||||||
seq2  CTTCCAGCTCCCCTCCTGTGAATTCCAAAACGACTTCTAG-CTGGTATAG  98

seq1  TCAGAAATTATAGATCCGTACAGGGAGGTCACTTTTTGCTTTGTTAATAT  143
      ||||||  |||||||||||||||||| ||||| |||||||||||| ||||
seq2  TCAGAA--TATAGATCCGTACAGGGAAGTCACCTTTTGCTTTGTTTATAT  146

seq1  TCTGT-GCCATATA-TAGATATCAATT-AAATGTCCAATGCAATGGC-AG  189
      ||||| |||||||| |||||||||||| ||||||||||||||||||| ||
seq2  TCTGTGGCCATATATTAGATATCAATTAAAATGTCCAATGCAATGGCAAG  196

seq1  ATCATTATACTC-TGATGAAAC-AGAAG-AAAGAAGACAGTTATCATGTG  236
      |||||||||||| ||||||||| ||||| |||||||||||||||||||||
seq2  ATCATTATACTCTTGATGAAACAAGAAGAAAAGAAGACAGTTATCATGTG  246

seq1  -TAAACAGCACTAATGATGGCTGTGAAGCGAAGTGGTGTCTTCTCATCAG  285
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGCACTAATGATGGCTGTGAAGCGAAGTGGTGTCTTCTCATCAG  296

seq1  GACGAGGGTGAATGAAATGGTGGCCTGAGGGGACTTGCTGCAGAAGCTTT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGGGTGAATGAAATGGTGGCCTGAGGGGACTTGCTGCAGAAGCTTT  346

seq1  TCCACGAGCTAAGCTCCAACCCAAGTCAGATGGAATGGGATCAGAGCGAA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGAGCTAAGCTCCAACCCAAGTCAGATGGAATGGGATCAGAGCGAA  396

seq1  AGGAAAACACCAGAATTAGATGCAATCAAGGAGTTTCGGGTGGGAGATCA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACACCAGAATTAGATGCAATCAAGGAGTTTCGGGTGGGAGATCA  446

seq1  CTACAAGAACGGATTGCTGAGCGGTAGACTTCCCTCGGCAGGCGTGATTA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAACGGATTGCTGAGCGGTAGACTTCCCTCGGCAGGCGTGATTA  496

seq1  CCTGCCTGGGATGACTTAATTATGGAGCTGCCTGGAGGCATGAGGCTGAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGGGATGACTTAATTATGGAGCTGCCTGGAGGCATGAGGCTGAA  546

seq1  TTGATGACTTCTGCACTTAGATTTTATAGTTCTATTGAAAAGAATATAAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACTTCTGCACTTAGATTTTATAGTTCTATTGAAAAGAATATAAA  596

seq1  ACCCACATAGTTTTAAATTCAAATTTATTGCAAGGCTTATATAGTCAAAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATAGTTTTAAATTCAAATTTATTGCAAGGCTTATATAGTCAAAT  646

seq1  GTGTCCATATAAAGATCAAATTGTTGATTTACAGACAGAAAATCTATAAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATATAAAGATCAAATTGTTGATTTACAGACAGAAAATCTATAAC  696

seq1  CTGCATTCTGCGGCATCCAAGTTCTACACAATCTTTATAGAATGCTTCCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCTGCGGCATCCAAGTTCTACACAATCTTTATAGAATGCTTCCT  746

seq1  TGTAAAAAGTCTGATATAAAAGGAATCATAAATTTGATAGTTCTTGGCAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGTCTGATATAAAAGGAATCATAAATTTGATAGTTCTTGGCAA  796

seq1  TCTAGTACTTTCCTTCGCTTAAAGGTATACTACATTGGATTAATATGATA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTACTTTCCTTCGCTTAAAGGTATACTACATTGGATTAATATGATA  846

seq1  TTACACATAATTGATTTAAGTTGCTCTCTTATGCTCAAATATGAAAATAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATAATTGATTTAAGTTGCTCTCTTATGCTCAAATATGAAAATAA  896

seq1  TCATCTACAAACCTAGCATTTCCATTAAGGCTATGGGCGTGAGTGGAGTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACAAACCTAGCATTTCCATTAAGGCTATGGGCGTGAGTGGAGTG  946

seq1  TGATCAGAATTCCCCATCCTCCGTTCTCTATAGATGGTCGTCTGATGGGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGAATTCCCCATCCTCCGTTCTCTATAGATGGTCGTCTGATGGGA  996

seq1  TAATCATTTGTAAGTCAGATTCGAGTGAGAGAAACGAATTCGCCATGGAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTGTAAGTCAGATTCGAGTGAGAGAAACGAATTCGCCATGGAG  1046

seq1  CCAGGGGTGTTGGGAGAGTACTGGGTAAGCATAGAGAGGCCCCAGGTTCC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTGTTGGGAGAGTACTGGGTAAGCATAGAGAGGCCCCAGGTTCC  1096

seq1  ACCCAGCACCACACATAATGTGTTTGGTGGAATAAGCCTGTGGTGCTACA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCACCACACATAATGTGTTTGGTGGAATAAGCCTGTGGTGCTACA  1146

seq1  CTCAGTGGCAGAAGCTCGAGGATCGACAGTTCAAAACTACCTTTGACTCC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGCAGAAGCTCGAGGATCGACAGTTCAAAACTACCTTTGACTCC  1196

seq1  ATAGTGAATTC  1196
      |||||||||||
seq2  ATAGTGAATTC  1207

seq1: chr11_86137494_86138116
seq2: B6Ng01-197D06.g_66_688

seq1  GAATTCCAGTTTCAGTGATACCAGATACCCTCTTCTGACCTCTACTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTCAGTGATACCAGATACCCTCTTCTGACCTCTACTGGTA  50

seq1  CCAGGTACATGCATGGTACAAACACACATGCAGGCAAAACACTCACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACATGCATGGTACAAACACACATGCAGGCAAAACACTCACAACA  100

seq1  CATAAATTAATTAATCTAACTTTTAAAAAAAATACTTTGTTCATGTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTAATTAATCTAACTTTTAAAAAAAATACTTTGTTCATGTAGAT  150

seq1  GTATATTAGGTTTCCTGATTTTTTTCTAATGAAGCAGTGGTTTAAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAGGTTTCCTGATTTTTTTCTAATGAAGCAGTGGTTTAAAATGT  200

seq1  ATCTAAAGTGAATTATTTTTTTATTAAGTAGTACTTTAAAATGTATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGTGAATTATTTTTTTATTAAGTAGTACTTTAAAATGTATCTAA  250

seq1  AGTTAGGCTCACATAAATAAAACCACTTTGGAGTTCATTTATTGTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGCTCACATAAATAAAACCACTTTGGAGTTCATTTATTGTTTCTC  300

seq1  TAGGAGCTGGAGATCAAACCATCTCTTCTCCATGCCAGGCAAATATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTGGAGATCAAACCATCTCTTCTCCATGCCAGGCAAATATTCTA  350

seq1  CCAATGAGTCACATCCTTAAGCTCTAGCAGTAGTAACGCTTAAGTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGTCACATCCTTAAGCTCTAGCAGTAGTAACGCTTAAGTATAAA  400

seq1  TGAGAACTGACATAAATTTTGAGAATCTACTTCCTACAAGGCAATAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTGACATAAATTTTGAGAATCTACTTCCTACAAGGCAATAATAG  450

seq1  TGATATCCAAGCGGGGTGTGGTGGCACATGCCTTTAATTCCAGTACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCCAAGCGGGGTGTGGTGGCACATGCCTTTAATTCCAGTACTCAG  500

seq1  GAGGCAGGCGTCCAAGTTCAGGGCCAGCTTTCAGGGCCAGCTTGGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCGTCCAAGTTCAGGGCCAGCTTTCAGGGCCAGCTTGGTCTAC  550

seq1  AGAGCATTCCAAGACAGGAACTACATAGAGAAAACCTTGGAGGACATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTCCAAGACAGGAACTACATAGAGAAAACCTTGGAGGACATGGG  600

seq1  GGACGGGGGTGGGGGTAGGGAGA  623
      |||||||||||||||||||||||
seq2  GGACGGGGGTGGGGGTAGGGAGA  623