BAC Information

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BAC

Clone NameB6Ng01-197H02
Chromosome11 (Build37)
Map Location 105,348,653 - 105,349,765
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
Downstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197H02.bB6Ng01-197H02.g
ACCGA019305GA019306
length1,1211,118
definitionB6Ng01-197H02.b B6Ng01-197H02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatctgtactggatggtttttttttttggcacgttagagtcatc
agagagaaaggagtctcagttgaggaaatgcctccatgagatccagctgt
aggacattttctcaattagtgatcaatggagggagagtcgagcccattgt
ggatggtgccaaccctgggctggaagtcctgggttccataagaaagcagg
ctgagcaagctagaggatgcaagccagcaagcagctcctgccctgactga
gttcctatcctcacttcctccatgatggtctgtgatctggaagtgtaagc
caaataaaccctttcctccccatcttgctttttggtcactgtgttttgta
gcagcaatagaaaccctaagtaagacactatctttctcccaaaccaaaat
ttatttactactcttttaaagtcaacaactcaacaatttttaaaaatcaa
cattctaacacagtgcatcctaattgaaatacaacaccaaattgataata
tgatgaaaatgacagtaggaaaatattaaaattctcatcttccataatta
aactactgttttctatgagtacagaaaaccataaatacaaagaaaaaacc
aaaatcataacataccacatacaactatggttgcttttcacttcttccct
tgggctatccaggtgctgctgcacaccagatgggaaaggacagagcaaaa
gctgaagtctgaggtttgatcattccttggggtgtccaggccccaatgca
tacagaaccagaaaagacgaatcaaagtctgaacgggtggatcagcagga
ttcctgttccgcacttccatgttacaactcttttagaaaacagctctttt
agacagtagtcaacaaaataacctgtgctctttacttggcgtgaacatgg
actatatataaacctgggaaagtgggaaaggggttcttttttagagtgaa
gttcatcggctgaagctaaaggtacgggggaatactgcgtctgcatggag
aggcattcgaggaagttgaaactggattcagcaaaggattacaatgacat
tccccaaagtaagaagtgggtgtctggcctccccagatactagctaaaga
aagaagaagccctaactttac
gaattcagaggaaagccatgtagctttcagggaccaaacttgggctacca
aatttgacagccatccccctgagccatctcaatgccttaaagcttttgcc
ttgaaaagacacccttaggaggattcaatcacatacattctgtacatata
tccacagagaaaaacatctggaggtacatatctgacacagaactaggatc
cagaggaaatgaataattggcaaaactcagttgtgaggacaagcagtggt
tccagagatagcaaaaagacacaaaaagccaatgaatatagcaggtaaca
caggaagagaagatgctcaaggttacagccatttgggggtagaaactgag
actacaaagagttgctgatacattactatcctaagagctaaggccacaaa
tggtgataatccagttatcagcaggatgagaggaacaagactgcatgctc
ttagctgccggcggaggcacggaatgcaggcactctggaaaacaatctat
ttattcctttaaacatagaacatgcaactaccacacaacccaacaattac
attcttggccatttattcctccaaagtgaagactgtgttcacacaaagtc
ttgtacataaatgctaatcacagtcttattcacagtaggcaacactagaa
agaacccacggggctctcatggatggttaaacaaactgcaatatagccca
ttcatgcctgaacagtgaaaagaattaagtcacttttttttttttttttt
ttgagacagggcctcatgtaggcctggtggattagaactcacttttgcag
ccaaggatggcaatgttctaatcctcctgcttctacctgttgaatgctgg
gattacaaaacatgtgctaccaggcctggttttatgtgggtactggagac
cctggagcccggggcctttttgctttgtttacgtgctctgtaactgaact
tacattcttcaactcttaactttgaatttttcaaaagaagttattaataa
atcaacagctcctgagttgatttcttcagagatgtggagtgttagtgaaa
agcaatttccaatacctatagaatatgctccacccgttgattgtttgtgc
gttttaacaaggtcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105348653_105349765
seq2: B6Ng01-197H02.g_65_1182

seq1  GAATTCAGAGGAAAGCCATGTAGCTTTCAGGGACCAAACTTGGGCTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGAAAGCCATGTAGCTTTCAGGGACCAAACTTGGGCTACCA  50

seq1  AATTTGACAGCCATCCCCCTGAGCCATCTCAATGCCTTAAAGCTTTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACAGCCATCCCCCTGAGCCATCTCAATGCCTTAAAGCTTTTGCC  100

seq1  TTGAAAAGACACCCTTAGGAGGATTCAATCACATACATTCTGTACATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGACACCCTTAGGAGGATTCAATCACATACATTCTGTACATATA  150

seq1  TCCACAGAGAAAAACATCTGGAGGTACATATCTGACACAGAACTAGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAGAAAAACATCTGGAGGTACATATCTGACACAGAACTAGGATC  200

seq1  CAGAGGAAATGAATAATTGGCAAAACTCAGTTGTGAGGACAAGCAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAATGAATAATTGGCAAAACTCAGTTGTGAGGACAAGCAGTGGT  250

seq1  TCCAGAGATAGCAAAAAGACACAAAAAGCCAATGAATATAGCAGGTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGATAGCAAAAAGACACAAAAAGCCAATGAATATAGCAGGTAACA  300

seq1  CAGGAAGAGAAGATGCTCAAGGTTACAGCCATTTGGGGGTAGAAACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAGAAGATGCTCAAGGTTACAGCCATTTGGGGGTAGAAACTGAG  350

seq1  ACTACAAAGAGTTGCTGATACATTACTATCCTAAGAGCTAAGGCCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAGAGTTGCTGATACATTACTATCCTAAGAGCTAAGGCCACAAA  400

seq1  TGGTGATAATCCAGTTATCAGCAGGATGAGAGGAACAAGACTGCATGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATAATCCAGTTATCAGCAGGATGAGAGGAACAAGACTGCATGCTC  450

seq1  TTAGCTGCCGGCGGAGGCACGGAATGCAGGCACTCTGGAAAACAATCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCCGGCGGAGGCACGGAATGCAGGCACTCTGGAAAACAATCTAT  500

seq1  TTATTCCTTTAAACATAGAACATGCAACTACCACACAACCCAACAATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTTAAACATAGAACATGCAACTACCACACAACCCAACAATTAC  550

seq1  ATTCTTGGCCATTTATTCCTCCAAAGTGAAGACTGTGTTCACACAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGCCATTTATTCCTCCAAAGTGAAGACTGTGTTCACACAAAGTC  600

seq1  TTGTACATAAATGCTAATCACAGTCTTATTCACAGTAGGCAACACTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATAAATGCTAATCACAGTCTTATTCACAGTAGGCAACACTAGAA  650

seq1  AGAACCCACGGGGCTCTCATGGATGGTTAAACAAACTGCAATATAGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACGGGGCTCTCATGGATGGTTAAACAAACTGCAATATAGCCCA  700

seq1  TTCATGCCTGAACAGTGAAAAGAATTAAGTCACTTTTTTTTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCATGCCTGAACAGTGAAAAGAATTAAGTCAC-TTTTTTTTTTTTTTTT  749

seq1  TTTGAGACAGGGCCTCATGTAGGCCTGGTGGATTAGAACTCAC-TTTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGAGACAGGGCCTCATGTAGGCCTGGTGGATTAGAACTCACTTTTGCA  799

seq1  GCCAAGGATGGCAATGTTCTAATCCTCCTGCTTCTACCTGTTGAATGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGATGGCAATGTTCTAATCCTCCTGCTTCTACCTGTTGAATGCTG  849

seq1  GGATTAC-AAACATGTGCTACCAGGCCTGGTTTTATGT-GGTACTGGAGA  897
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GGATTACAAAACATGTGCTACCAGGCCTGGTTTTATGTGGGTACTGGAGA  899

seq1  CCCTGGAGCCCGGGGCC-TTTTGCTTTG-TTACGTGCTCTGTAACTGAAC  945
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CCCTGGAGCCCGGGGCCTTTTTGCTTTGTTTACGTGCTCTGTAACTGAAC  949

seq1  -TACATTC-TCAACTCTTAACTTTG-ATTTTTCAAAAGAAGTTATTAATA  992
       ||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TTACATTCTTCAACTCTTAACTTTGAATTTTTCAAAAGAAGTTATTAATA  999

seq1  AATCAACAGCTCCTGAG-TGA-TTCCTCAGAGATGT-GAGTG-TAGTGAA  1038
      ||||||||||||||||| ||| ||| |||||||||| ||||| ||||| |
seq2  AATCAACAGCTCCTGAGTTGATTTCTTCAGAGATGTGGAGTGTTAGTG-A  1048

seq1  AAAGCCATTCCAAATA-CTATAGAATATGGCTCCACCCCCTTGTTTGTTT  1087
      ||||| ||| | |||| ||||||||||| |||||| ||| ||| ||||  
seq2  AAAGCAATTTCCAATACCTATAGAATAT-GCTCCA-CCCGTTGATTGT--  1094

seq1  TGTTGTCGTTTTTAACAGGGTCTTGG  1113
        ||||   |||||||| ||||||||
seq2  --TTGTGCGTTTTAACAAGGTCTTGG  1118