BAC Information

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BAC

Clone NameB6Ng01-197J21
Chromosome11 (Build37)
Map Location 102,059,376 - 102,214,160
singlet/doubletdoublet
Overlap geneHdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1
Upstream geneEzh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3
Downstream geneRap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197J21.bB6Ng01-197J21.g
ACCGA019433GA019434
length559841
definitionB6Ng01-197J21.b B6Ng01-197J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,213,596 - 102,214,160)(102,059,376 - 102,060,213)
sequence
tcaaacagccagagggagggggccaggaactcaaagggaaatgggagcag
aaagcacaaagagacccagggggaccgatgtgggcaaagaaagaggagcc
cactgggagggcccagctcacctgacttccctcccctccctaccccaggc
tgattgtcagtaaaccagaacggaagatgatcaagggctctggcttccac
ctggacctgttgctggtcgttggcatgggtggggtggctgccctctttgg
gatgccttggctcagtgccaccactgtaagatctgttacccacgccaatg
ccctcacagtcatggggaaggccagtggtccaggggctgcagcccagatc
caagaggtcaaggaacagcggatcagtgggctcctggtctctgtgcttgt
gggtaagtggggccagtcatgcccctatgtcctgctccactcatttctgc
cccttgttcttgggatgaggtgtgggggtggctcttcccactcagaaatc
ccacctccactatctcccctgcccaattttgacttcttcacttggggttg
gggaatgag
gaattccctttatttccaggcaggatctcactagatagagcaggctagcc
ttgaactctccattctcctgcctcagcctccctagtgcggcgatgataac
tgtgcatcacatctgaacacagcagtttctaaaccaaaagtgggtctcaa
aaattctaccctcgctgaccaactgcctagtgatgcctggagctgagaga
gcaatgtgtgtgcttttcccaccatggcggtggcacaaggttaaggagca
cccacagccttaggagtgggggaggtgtggcatcccagctagctaaccca
agcagtgtcctcgctaaggaagagaaaggggtgactactttgcactgcta
ggggtggctgtgagcagcgcagtgtcaggttcctggtacacagcggcccc
tatgggaagggcagggaggaaaacgggttctggtagtagtggtagcatct
ctgtccccactgctcaaggtaagacatctggctgttgggaggctgctagt
gggaggatagactaaaaaattggggtctcacgggcaggagccaccctacc
agaataaagggccctcctgatgctgaagcaggaaggatattatcaatcta
tgaggccaaggactgggtcctagtgccacccggaagtgcagcgggctgcc
caaaggcagggcacttctgaagtcctttcgctgctgacagctagctctgc
cctgccctgcccaggcaccccagccccactgcctacccagtccacgatga
ggaccttgcccacgctcagcttctgctgcaggagtttagctgtgatggct
acggaagttgaagaagcagattcccctgagggggtgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102213596_102214160
seq2: B6Ng01-197J21.b_46_610 (reverse)

seq1  CTCATTCCCCAACCCCAAGAGAAGGAGTCAAAATTGGGCAGGGGAGATAG  50
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  CTCATTCCCCAACCCCAAGTGAAGAAGTCAAAATTGGGCAGGGGAGATAG  50

seq1  TGGAGGTGGGATTTCTGAGTGGGAAGAGCCACCCCCACACCTCATCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGGGATTTCTGAGTGGGAAGAGCCACCCCCACACCTCATCCCAA  100

seq1  GAACAAGGGGCAGAAATGAGTGGAGCAGGACATAGGGGCATGACTGGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGGGCAGAAATGAGTGGAGCAGGACATAGGGGCATGACTGGCCC  150

seq1  CACTTACCCACAAGCACAGAGACCAGGAGCCCACTGATCCGCTGTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCCACAAGCACAGAGACCAGGAGCCCACTGATCCGCTGTTCCTT  200

seq1  GACCTCTTGGATCTGGGCTGCAGCCCCTGGACCACTGGCCTTCCCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTTGGATCTGGGCTGCAGCCCCTGGACCACTGGCCTTCCCCATGA  250

seq1  CTGTGAGGGCATTGGCGTGGGTAACAGATCTTACAGTGGTGGCACTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGGCATTGGCGTGGGTAACAGATCTTACAGTGGTGGCACTGAGC  300

seq1  CAAGGCATCCCAAAGAGGGCAGCCACCCCACCCATGCCAACGACCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATCCCAAAGAGGGCAGCCACCCCACCCATGCCAACGACCAGCAA  350

seq1  CAGGTCCAGGTGGAAGCCAGAGCCCTTGATCATCTTCCGTTCTGGTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCAGGTGGAAGCCAGAGCCCTTGATCATCTTCCGTTCTGGTTTAC  400

seq1  TGACAATCAGCCTGGGGTAGGGAGGGGAGGGAAGTCAGGTGAGCTGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCAGCCTGGGGTAGGGAGGGGAGGGAAGTCAGGTGAGCTGGGCC  450

seq1  CTCCCAGTGGGCTCCTCTTTCTTTGCCCACATCGGTCCCCCTGGGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTGGGCTCCTCTTTCTTTGCCCACATCGGTCCCCCTGGGTCTCT  500

seq1  TTGTGCTTTCTGCTCCCATTTCCCTTTGAGTTCCTGGCCCCCTCCCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTCTGCTCCCATTTCCCTTTGAGTTCCTGGCCCCCTCCCTCTG  550

seq1  GCTGTTTGAGAATTC  565
      |||||||||||||||
seq2  GCTGTTTGAGAATTC  565

seq1: chr11_102059376_102060213
seq2: B6Ng01-197J21.g_69_909

seq1  GAATTCCCTTTATTTCCAGGCAGGATCTCACTAGATAGAGCAGGCTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTATTTCCAGGCAGGATCTCACTAGATAGAGCAGGCTAGCC  50

seq1  TTGAACTCTCCATTCTCCTGCCTCAGCCTCCCTAGTGCGGCGATGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTCCATTCTCCTGCCTCAGCCTCCCTAGTGCGGCGATGATAAC  100

seq1  TGTGCATCACATCTGAACACAGCAGTTTCTAAACCAAAAGTGGGTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCACATCTGAACACAGCAGTTTCTAAACCAAAAGTGGGTCTCAA  150

seq1  AAATTCTACCCTCGCTGACCAACTGCCTAGTGATGCCTGGAGCTGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTACCCTCGCTGACCAACTGCCTAGTGATGCCTGGAGCTGAGAGA  200

seq1  GCAATGTGTGTGCTTTTCCCACCATGGCGGTGGCACAAGGTTAAGGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGTGTGCTTTTCCCACCATGGCGGTGGCACAAGGTTAAGGAGCA  250

seq1  CCCACAGCCTTAGGAGTGGGGGAGGTGTGGCATCCCAGCTAGCTAACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCTTAGGAGTGGGGGAGGTGTGGCATCCCAGCTAGCTAACCCA  300

seq1  AGCAGTGTCCTCGCTAAGGAAGAGAAAGGGGTGACTACTTTGCACTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTCCTCGCTAAGGAAGAGAAAGGGGTGACTACTTTGCACTGCTA  350

seq1  GGGGTGGCTGTGAGCAGCGCAGTGTCAGGTTCCTGGTACACAGCGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGCTGTGAGCAGCGCAGTGTCAGGTTCCTGGTACACAGCGGCCCC  400

seq1  TATGGGAAGGGCAGGGAGGAAAACGGGTTCTGGTAGTAGTGGTAGCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGGGCAGGGAGGAAAACGGGTTCTGGTAGTAGTGGTAGCATCT  450

seq1  CTGTCCCCACTGCTCAAGGTAAGACATCTGGCTGTTGGGAGGCTGCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCACTGCTCAAGGTAAGACATCTGGCTGTTGGGAGGCTGCTAGT  500

seq1  GGGAGGATAGACTAAAAAATTGGGGTCTCACGGGCAGGAGCCACCCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGATAGACTAAAAAATTGGGGTCTCACGGGCAGGAGCCACCCTACC  550

seq1  AGAATAAAGGGCCCTCCTGATGCTGAAGCAGGAAGGATATTATCAATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGGGCCCTCCTGATGCTGAAGCAGGAAGGATATTATCAATCTA  600

seq1  TGAGGCCAAGGACTGGGTCCTAGTGCCACCCGGAAGTGCAGCGGGCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAAGGACTGGGTCCTAGTGCCACCCGGAAGTGCAGCGGGCTGCC  650

seq1  CAAAGGCAGGGCACTTCTGAAGTCC-TTCGCTGCTGACAGCTAGCTCTGC  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAAGGCAGGGCACTTCTGAAGTCCTTTCGCTGCTGACAGCTAGCTCTGC  700

seq1  CCTGCCCTGCCCAGGCACCCCAGCCCCACTGCCTACCCAGTCCACGATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTGCCCAGGCACCCCAGCCCCACTGCCTACCCAGTCCACGATGA  750

seq1  GGACCTTGCCCACGCTCAGCTTCTGCTGCAGGAGTTTAGCTGTGATGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTGCCCACGCTCAGCTTCTGCTGCAGGAGTTTAGCTGTGATGGCT  800

seq1  ACGG-AGTTGAAGAAGCAGAATCCCCTGA-GGGGTGTGGGG  838
      |||| ||||||||||||||| |||||||| |||||||||||
seq2  ACGGAAGTTGAAGAAGCAGATTCCCCTGAGGGGGTGTGGGG  841