BAC Information

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BAC

Clone NameB6Ng01-197M09
Chromosome11 (Build37)
Map Location 71,861,595 - 71,982,299
singlet/doubletdoublet
Overlap genePitpnm3, 4933427D14Rik
Upstream geneLOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik
Downstream geneTxnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197M09.bB6Ng01-197M09.g
ACCGA019552GA019553
length1,100425
definitionB6Ng01-197M09.b B6Ng01-197M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,981,198 - 71,982,299)(71,861,595 - 71,862,025)
sequence
gaattcttcggtggaagcaaatagtcatttgaaggatcgtccgtcacggc
acgcagcagcagcagcccagcctgccgagcaggtgtgtgtggtgtgtggt
tggtctgctgcttttatcacatgataacgtctccagtgaaaggaaaatga
tatgcagattactttgcaaacactacattatcctactcaaggagcgggaa
gttattctccttatgcagcatgttagttcttagagtgtgtatttagttct
gggtctggaccagccatgcaaacagctggcagacatctctagagtcacag
gtttctgctggggtactgttagctcttcccctcagggcagagtgtagata
aactgtggcctgactgtggacggcctgcagcaggagaatcgctgccctcc
tttcctgtcatccagcctactttggctcagtactggcctaatttcctttc
tctgaaaggcctgatgttcttgttaggcaagcaggttttgtgtttggccc
agcagagaggaaagaaggtccaagaaagaaatgagaaaaataaatacctc
ttttgttgtccaggctaatatttctctgcaggatttgcttttaatgttta
gggaactgtccctgcctacctagcttagggactttggagtagaaggtgca
ggctgcattcctttagttttctaaaggttgaaaagaagtgcttgctgctg
taattgcccaaagtaagcaacaggcagaatctaaaggagccagaagggaa
caggagtaaggtttattatttatttgatgtatgtgagtacactgttactg
tcttcagacacaccagaagagggcatcagattcagatgtttacagatggt
tgtaagccaccatgtggttgctgggaatgaactcaggacctctgaaggaa
cagctgacaaggctcttaaccactgagccatttctccagcccaggagtaa
agttttaatagcccagtgtccttgggagcaagagactgtaggtcaagaat
atatctaatcctgttaaacagatttagctgtagcctccaattgtgtaatc
ttttggctggtgttaaagtggaagtccccacctgctgtaatgaagaagga

cactggaaagttggttgtttaaggcggggtcaactgcaacgctcctacag
tcagggtgcccctcccaggtggggcttcacctgagccaaatgtggagcat
gcctgcaaaagtggcacctcctccagacttgggggcaccggtctggcagg
gtccagtcttctataggtgccatgttttgtctgcaggacacttctggggc
atagctctgggttgcaaagtacccaaagtacagtttaaaaaccattagat
acagcctcccctccttcagaggagcaccccagtaagctcaagaatcctgg
ggctcagatacatatgtggtagcccagcacccaggcaggaaggctgtttg
tctgaatgcatgaaaataatttacttctttaaaaatatctcatggtgctt
aagggagaggtcagtctctggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71981198_71982299
seq2: B6Ng01-197M09.b_49_1148 (reverse)

seq1  TCCTTCTTCTATACAACAGGT-GGGACTCCAACTCTAAACACCAGCACAA  49
      |||||||||  |||| ||||| |||||| | ||| | ||||||||| |||
seq2  TCCTTCTTCATTACAGCAGGTGGGGACTTCCACT-TTAACACCAGC-CAA  48

seq1  AAGAATTACAACAATGGA-GCTACAGCTAAAATCCTGTTTAACA-GATTA  97
      ||| ||||||  | |||| ||||||||||||   |||||||||| |||||
seq2  AAG-ATTACACAATTGGAGGCTACAGCTAAA--TCTGTTTAACAGGATTA  95

seq1  GATATATTCTTGACCTACAGTCTTCTTGCTCCCAAGGCCACTGGGCTATT  147
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  GATATATTCTTGACCTACAGTC-TCTTGCTCCCAAGGACACTGGGCTATT  144

seq1  AAAACTTTACTCCTGGGCTGGGGAAATGGCTCAGTGGTTAAGAGCCTTGT  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAACTTTACTCCTGGGCTGGAGAAATGGCTCAGTGGTTAAGAGCCTTGT  194

seq1  CAGCTGTTCCTTCAGAGGTCCTGAGTTCATTCCCAGCAACCACATGGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCCTTCAGAGGTCCTGAGTTCATTCCCAGCAACCACATGGTGG  244

seq1  CTTACAACCATCTGT-AACATCTGAATCTGATGCCCTCTTCTGGTGTGTC  296
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTACAACCATCTGTAAACATCTGAATCTGATGCCCTCTTCTGGTGTGTC  294

seq1  TGAAGACAGTAACAGTGTACTCACATACATCAAATAAATAATAAACCTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGTAACAGTGTACTCACATACATCAAATAAATAATAAACCTTA  344

seq1  CTCCTGTTCCCTTCTGGCTCCTTTAGATTCTGCCTGTTGCTTACTTTGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTCCCTTCTGGCTCCTTTAGATTCTGCCTGTTGCTTACTTTGGG  394

seq1  CAATTACAGCAGCAAGCACTTCTTTTCAACCTTTAGAAAACTAAAGGAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAGCAGCAAGCACTTCTTTTCAACCTTTAGAAAACTAAAGGAAT  444

seq1  GCAGCCTGCACCTTCTACTCCAAAGTCCCTAAGCTAGGTAGGCAGGGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGCACCTTCTACTCCAAAGTCCCTAAGCTAGGTAGGCAGGGACA  494

seq1  GTTCCCTAAACATTAAAAGCAAATCCTGCAGAGAAATATTAGCCTGGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTAAACATTAAAAGCAAATCCTGCAGAGAAATATTAGCCTGGACA  544

seq1  ACAAAAGAGGTATTTATTTTTCTCATTTCTTTCTTGGACCTTCTTTCCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAGGTATTTATTTTTCTCATTTCTTTCTTGGACCTTCTTTCCTC  594

seq1  TCTGCTGGGCCAAACACAAAACCTGCTTGCCTAACAAGAACATCAGGCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGCCAAACACAAAACCTGCTTGCCTAACAAGAACATCAGGCCT  644

seq1  TTCAGAGAAAGGAAATTAGGCCAGTACTGAGCCAAAGTAGGCTGGATGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAAGGAAATTAGGCCAGTACTGAGCCAAAGTAGGCTGGATGAC  694

seq1  AGGAAAGGAGGGCAGCGATTCTCCTGCTGCAGGCCGTCCACAGTCAGGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAGGGCAGCGATTCTCCTGCTGCAGGCCGTCCACAGTCAGGCC  744

seq1  ACAGTTTATCTACACTCTGCCCTGAGGGGAAGAGCTAACAGTACCCCAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATCTACACTCTGCCCTGAGGGGAAGAGCTAACAGTACCCCAGC  794

seq1  AGAAACCTGTGACTCTAGAGATGTCTGCCAGCTGTTTGCATGGCTGGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGTGACTCTAGAGATGTCTGCCAGCTGTTTGCATGGCTGGTCC  844

seq1  AGACCCAGAACTAAATACACACTCTAAGAACTAACATGCTGCATAAGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAACTAAATACACACTCTAAGAACTAACATGCTGCATAAGGAG  894

seq1  AATAACTTCCCGCTCCTTGAGTAGGATAATGTAGTGTTTGCAAAGTAATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTCCCGCTCCTTGAGTAGGATAATGTAGTGTTTGCAAAGTAATC  944

seq1  TGCATATCATTTTCCTTTCACTGGAGACGTTATCATGTGATAAAAGCAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATCATTTTCCTTTCACTGGAGACGTTATCATGTGATAAAAGCAGC  994

seq1  AGACCAACCACACACCACACACACCTGCTCGGCAGGCTGGGCTGCTGCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAACCACACACCACACACACCTGCTCGGCAGGCTGGGCTGCTGCTG  1044

seq1  CTGCGTGCCGTGACGGACGATCCTTCAAATGACTATTTGCTTCCACCGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGCCGTGACGGACGATCCTTCAAATGACTATTTGCTTCCACCGAA  1094

seq1  GAATTC  1102
      ||||||
seq2  GAATTC  1100

seq1: chr11_71861595_71862025
seq2: B6Ng01-197M09.g_70_500

seq1  GAATTCCACTGGAAAGTTGGTTGTTTAAGGCGGGGTCAACTGCAACGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGGAAAGTTGGTTGTTTAAGGCGGGGTCAACTGCAACGCTC  50

seq1  CTACAGTCAGGGTGCCCCTCCCAGGTGGGGCTTCACCTGAGCCAAATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCAGGGTGCCCCTCCCAGGTGGGGCTTCACCTGAGCCAAATGTG  100

seq1  GAGCATGCCTGCAAAAGTGGCACCTCCTCCAGACTTGGGGGCACCGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCCTGCAAAAGTGGCACCTCCTCCAGACTTGGGGGCACCGGTCT  150

seq1  GGCAGGGTCCAGTCTTCTATAGGTGCCATGTTTTGTCTGCAGGACACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTCCAGTCTTCTATAGGTGCCATGTTTTGTCTGCAGGACACTTC  200

seq1  TGGGGCATAGCTCTGGGTTGCAAAGTACCCAAAGTACAGTTTAAAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATAGCTCTGGGTTGCAAAGTACCCAAAGTACAGTTTAAAAACCA  250

seq1  TTAGATACAGCCTCCCCTCCTTCAGAGGAGCACCCCAGTAAGCTCAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATACAGCCTCCCCTCCTTCAGAGGAGCACCCCAGTAAGCTCAAGAA  300

seq1  TCCTGGGGCTCAGATACATATGTGGTAGCCCAGCACCCAGGCAGGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGCTCAGATACATATGTGGTAGCCCAGCACCCAGGCAGGAAGGC  350

seq1  TGTTTGTCTGAATGCATGAAAATAATTTACTTCTTTAAAAATATCTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTGAATGCATGAAAATAATTTACTTCTTTAAAAATATCTCATG  400

seq1  GTGCTTAAGGGAGAGGTCAGTCTCTGGGGGA  431
      |||||||||||||||||||||||||||||||
seq2  GTGCTTAAGGGAGAGGTCAGTCTCTGGGGGA  431