BAC Information

Click to search

BAC

Clone NameB6Ng01-199A04
Chromosome11 (Build37)
Map Location 85,498,731 - 85,650,119
singlet/doubletdoublet
Overlap geneBcas3, Tbx2
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199A04.bB6Ng01-199A04.g
ACCGA020455GA020456
length1,072492
definitionB6Ng01-199A04.b B6Ng01-199A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,498,731 - 85,499,798)(85,649,622 - 85,650,119)
sequence
gaattccatgttttattccattaggttttgttttgttttgttttcagact
tggtgccattagccagattccttggaagggttggtctgcctgagaaaggt
tttccttcatcgtgtgccacccaagctgctttgcctgtattcacctatgc
tttccctcccttctgttcctcaatgtggttattaaaaaaataaaatccta
gttagatgttcaaatgtcaggcttctttaaacatatgtcagtggcaaact
tcatgatatcactgagagactttcattgttttgtgtgaatggtgccataa
gaagttcctggtaattttggtagaatttatggattatctgaccctgtcca
agtagctccccctttaatattgtggtttcagtacatttatgacatcgcaa
tattgagccacccaggacaaggagagcccaggcaattaaaggggggaaat
gtccaatgttggctttgtgagattaaaactgggaccctcattggctcatc
aagcctttctcccatctctgtcctctcctatttccctgtgggtgggccac
tgtgaatccattactacagtggctactactagtaacattcagaaaatccg
gcagagcgtaggtctcggagtcttaggactgaggattttcttcagattgt
tgggattagtttagtttaaattcttgtagcaaaatagaaaataacccagc
ccagtctgtctgttcttagagccagagaaaggggatttttgcagtgctgg
gcattgaactcaggatctctcatatgctgtgcaggtgttctaaccgatga
gctgcaccacccagcccaagaggagtcctctgaaaccttcatgtgctcgg
tgtctaattagtatatggaaatgcactcctgtaggcaaagctgcatggag
aaattgtgttgcattttctttattttgctgctagatcaacttctcactaa
agagggtcagcatcatagcctacacagtgttttcagaaagcctggtattt
ttttttgttagtagcttgaggaagagggtttgtttgcttcacctgtgtca
gaggtgtaatgtctgcaatggc
acttgcttccacatagagctaatacactccatacaatgtacctggccagg
cagacccctggtttacaaagacacaaccaaagacactgggaccctctcat
ttaatctatggtgatctacgagaccatttcacttgaaggagaattctctc
agcctcccccaaagggcctagggcctggatggacccagacaagtggctta
gaggagctcgccagggttgtgccacctgtcccactctttggctcccttgg
agagtaaaatttggaccctgcgttcctagcatctgtagagcttgggcaga
ttgccccaggcgccctcttttcatttagattcccagtcctgagccaagaa
acgaaggaataaaatgtaaaaatgtcagcgggagcctgagtctctactaa
ttgctaagtaaacatctccactccaactatggcccagctgtgttgagtgc
ctcgggggagtatgtgtgtctgtgtgggtatgagggggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85498731_85499798
seq2: B6Ng01-199A04.b_46_1117

seq1  GAATTCCATGTTTTATTCCATTAGGTTTTGTTTTGTTTTGTTTTCAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTTATTCCATTAGGTTTTGTTTTGTTTTGTTTTCAGACT  50

seq1  TGGTGCCATTAGCCAGATTCCTTGGAAGGGTTGGTCTGCCTGAGAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCATTAGCCAGATTCCTTGGAAGGGTTGGTCTGCCTGAGAAAGGT  100

seq1  TTTCCTTCATCGTGTGCCACCCAAGCTGCTTTGCCTGTATTCACCTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCATCGTGTGCCACCCAAGCTGCTTTGCCTGTATTCACCTATGC  150

seq1  TTTCCCTCCCTTCTGTTCCTCAATGTGGTTATTAAAAAAATAAAATCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCCCTTCTGTTCCTCAATGTGGTTATTAAAAAAATAAAATCCTA  200

seq1  GTTAGATGTTCAAATGTCAGGCTTCTTTAAACATATGTCAGTGGCAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGTTCAAATGTCAGGCTTCTTTAAACATATGTCAGTGGCAAACT  250

seq1  TCATGATATCACTGAGAGACTTTCATTGTTTTGTGTGAATGGTGCCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATCACTGAGAGACTTTCATTGTTTTGTGTGAATGGTGCCATAA  300

seq1  GAAGTTCCTGGTAATTTTGGTAGAATTTATGGATTATCTGACCCTGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCTGGTAATTTTGGTAGAATTTATGGATTATCTGACCCTGTCCA  350

seq1  AGTAGCTCCCCCTTTAATATTGTGGTTTCAGTACATTTATGACATCGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCCCCCTTTAATATTGTGGTTTCAGTACATTTATGACATCGCAA  400

seq1  TATTGAGCCACCCAGGACAAGGAGAGCCCAGGCAATTAAAGGGGGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCCACCCAGGACAAGGAGAGCCCAGGCAATTAAAGGGGGGAAAT  450

seq1  GTCCAATGTTGGCTTTGTGAGATTAAAACTGGGACCCTCATTGGCTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATGTTGGCTTTGTGAGATTAAAACTGGGACCCTCATTGGCTCATC  500

seq1  AAGCCTTTCTCCCATCTCTGTCCTCTCCTATTTCCCTGTGGGTGGGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTCTCCCATCTCTGTCCTCTCCTATTTCCCTGTGGGTGGGCCAC  550

seq1  TGTGAATCCATTACTACAGTGGCTACTACTAGTAACATTCAGAAAATCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATCCATTACTACAGTGGCTACTACTAGTAACATTCAGAAAATCCG  600

seq1  GCAGAGCGTAGGTCTCGGAGTCTTAGGACTGAGGATTTTCTTCAGATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCGTAGGTCTCGGAGTCTTAGGACTGAGGATTTTCTTCAGATTGT  650

seq1  TGGGATTAGTTTAGTTTAAATTCTTGTAGCAAAATAGAAAATAACCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAGTTTAGTTTAAATTCTTGTAGCAAAATAGAAAATAACCCAGC  700

seq1  CCAGTCTGTCTGTTCTTAGAGCCAGAGAAAGGGGATTTTTGCAGTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGTCTGTTCTTAGAGCCAGAGAAAGGGGATTTTTGCAGTGCTGG  750

seq1  GCATTGAACTCAGGATCTCTCATATGCTGTGCAGGTGTTCTAACCGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAACTCAGGATCTCTCATATGCTGTGCAGGTGTTCTAACCGATGA  800

seq1  GCTGCACCACCCAGCCCAAGAGGAGTCCTCTGAAACCTTCATGTGCTCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCACCCAGCCCAAGAGGAGTCCTCTGAAACCTTCATGTGCTCGG  850

seq1  TGTCTAATTAGTATATGGAAATGCACTCCTGTAGGCAAAGCTGCATGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTAGTATATGGAAATGCACTCCTGTAGGCAAAGCTGCATGGAG  900

seq1  AAATTGTGTTGCATTTTCTTTATTTTGCTGCTAGATC-ACTTCTCACTAA  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATTGTGTTGCATTTTCTTTATTTTGCTGCTAGATCAACTTCTCACTAA  950

seq1  AGAGGGTCAGCATCATAG-CTACACAGTG-TTTCAGAAAGCCTGGTA--T  995
      |||||||||||||||||| |||||||||| |||||||||||||||||  |
seq2  AGAGGGTCAGCATCATAGCCTACACAGTGTTTTCAGAAAGCCTGGTATTT  1000

seq1  TTTTTTGTTAGGTAGCTTGAGGAAGAGGGTTTGTTTTGCTTCA-CTGTGT  1044
      |||||||||| |||||||||||||||||||||| ||||||||| ||||||
seq2  TTTTTTGTTA-GTAGCTTGAGGAAGAGGGTTTG-TTTGCTTCACCTGTGT  1048

seq1  CAGAGGTGTAATGTCTGCAATGGC  1068
      ||||||||||||||||||||||||
seq2  CAGAGGTGTAATGTCTGCAATGGC  1072

seq1: chr11_85649622_85650119
seq2: B6Ng01-199A04.g_63_560 (reverse)

seq1  GGCTCCCCCTCATACCCACACAGACACACATACTCCCCCGAGGCACTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCCTCATACCCACACAGACACACATACTCCCCCGAGGCACTCAA  50

seq1  CACAGCTGGGCCATAGTTGGAGTGGAGATGTTTACTTAGCAATTAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGGCCATAGTTGGAGTGGAGATGTTTACTTAGCAATTAGTAGA  100

seq1  GACTCAGGCTCCCGCTGACATTTTTACATTTTATTCCTTCGTTTCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGCTCCCGCTGACATTTTTACATTTTATTCCTTCGTTTCTTGGC  150

seq1  TCAGGACTGGGAATCTAAATGAAAAGAGGGCGCCTGGGGCAATCTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGGGAATCTAAATGAAAAGAGGGCGCCTGGGGCAATCTGCCCA  200

seq1  AGCTCTACAGATGCTAGGAACGCAGGGTCCAAATTTTACTCTCCAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTACAGATGCTAGGAACGCAGGGTCCAAATTTTACTCTCCAAGGGA  250

seq1  GCCAAAGAGTGGGACAGGTGGCACAACCCTGGCGAGCTCCTCTAAGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGAGTGGGACAGGTGGCACAACCCTGGCGAGCTCCTCTAAGCCAC  300

seq1  TTGTCTGGGTCCATCCAGGCCCTAGGCCCTTTGGGGGAGGCTGAGAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGGGTCCATCCAGGCCCTAGGCCCTTTGGGGGAGGCTGAGAGAAT  350

seq1  TCTCCTTCAAGTGAAATGGTCTCGTAGATCACCATAGATTAAATGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAAGTGAAATGGTCTCGTAGATCACCATAGATTAAATGAGAGG  400

seq1  GTCCCAGTGTCTTTGGTTGTGTCTTTGTAAACCAGGGGTCTGCCTGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTGTCTTTGGTTGTGTCTTTGTAAACCAGGGGTCTGCCTGGCCA  450

seq1  GGTACATTGTATGGAGTGTATTAGCTCTATGTGGAAGCAAGTGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATTGTATGGAGTGTATTAGCTCTATGTGGAAGCAAGTGAATTC  498