BAC Information

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BAC

Clone NameB6Ng01-199H11
Chromosome11 (Build37)
Map Location 5,655,879 - 5,798,440
singlet/doubletdoublet
Overlap gene2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7
Upstream geneNf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24
Downstream geneGck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199H11.bB6Ng01-199H11.g
ACCGA020794GA020795
length1,100943
definitionB6Ng01-199H11.b B6Ng01-199H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,797,336 - 5,798,440)(5,655,879 - 5,656,812)
sequence
gaattcaaggaagtgagtagcctatcccaaacagcctctccccgatccgg
ggagccacttcataccccatgcacacggctctcctctgagggtcagtgct
cctgcctccaacctcgctcatactacccgagactctcccttacccgccat
ccctggaagagatggggtgagcagctcccacctgcaggccatctcctcac
aggccttcagctgcattgaccagaacagggatgggatcatctgcaaatca
gacctgaaggagacctattcccagctcggtgagtgggtccaggagcaacc
tcccagggacccggcttgttcacctcaggcacttgctccgagagaggaca
gtgccccgccctttctctcctacttagcctcattcaggcaggaatccccc
tcccccacctgccacacagctagagctgcccctgcctctgccctcactgc
ctgggaagcccgggagggcggcctgggtcacctcaagacctactctccta
gggagggtaagtgttccggaggaagagctggacgccatgctgcaggaagg
gaagggtcccatcaacttcaccgtcttcctcacactcttcggggagaagc
tcaatggtgagttggcaggaggtctgagtctccttagccacagcgcaaac
ccgacctcacctgacccgggagccccacgtgaggctcaacctaactcccc
tgaaacctgtgcaccctgcctgcccagggccaacgcagaggatgtggagc
gcctgaactggcttgggttcaggaaatatccacttcctaatcacagtttt
gactttcccagccgggcctgccaacccctttgatgcccaagaaacactct
gaattccgactcaagtctcttctgcacctccaatctacccaccccacctt
tattcactcggtatagccggagcccttccagcccagtacaaagaagctcc
cttgtactccaagttcatcctgggtggcggcctcgcggcagggatctgaa
gagttcactttggctgctcgccgcccccctctccagggacggaacccgag
gagccatcctgagttgcttccgcatgtcgacccatcggccagtggggtgg

gaattctgtctttctgtggaccttgatacacacccaagcatcagatgata
gaggaggtgggtcatcaccacttaagtgctaggtgtctcacactttttgg
ggtcctggttgaggaccctttccctaggctgacttatgtcagataagttc
ttgcgtctaatttgtttgatatgattttaatctacccacatgctcccaat
gtctccactcaccccaataaattcataggctggccccctctcttcttcca
ggagtctgccattaaccagcctgtgctgcatgggcggtgcctacccctac
tgttgaaagatggtggtgtttacttgtgcatccagagcaagatccttcaa
tttcaaaatcaagtcaaaagctgcttataaatgctctcagggcaacccag
gctgaaaaccagttttaaacaacatggggtgactcatagtagggaatagc
ccgatctcaacagtgagcgcaaggcaggcattgctgcatacgaccatcgc
caatacaagacaatagagtgggaagggagagaaggcttgcacaaggtttc
tggtgtgtatgtgtgtgtatactgggcatatacatgcacatgtgtgggtg
catgtgtgaagatcagaaaacattttgtggagtcagttctctcctacctt
caggtggcctctggaagcctaacacaagtcaccagacttgtgcagcaaga
gccttttccctgctgtgccaacgcactggccccatacaggagactctaag
tgaggggtgtacgcccttgaaggagtgatgggatttcttcctcctcctct
tttttttttttttccccatttttctggctgcagtaagatgagctgctgtg
tcctccttgtctccaacaatgtactgacttttcacaggcccttatattca
atgggatgttcaactgtggaattgaaacttccataaccaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5797336_5798440
seq2: B6Ng01-199H11.b_35_1134 (reverse)

seq1  CCACCCC-CTGGCCGCTGGGGTCGAACATGCGGAAGGCACTCAGGATGGC  49
      ||||||| ||||||| | |||||| |||||||||||  ||||||||||||
seq2  CCACCCCACTGGCCGAT-GGGTCG-ACATGCGGAAGCAACTCAGGATGGC  48

seq1  TTCCTCGGGGTCCGTCCCTGGAGGGGGGGGCGGGGCGAGGCAGCC-AAGT  98
       |||||||| ||||||||||||| |||||||  ||||| |||||| ||||
seq2  -TCCTCGGGTTCCGTCCCTGGAGAGGGGGGC--GGCGA-GCAGCCAAAGT  94

seq1  GAACTC-TCAGATCCCCTGCCGCGAGGCC-CCACCCAGGATGAACTTGGA  146
      |||||| |||||| ||||||||||||||| ||||||||||||||||||||
seq2  GAACTCTTCAGAT-CCCTGCCGCGAGGCCGCCACCCAGGATGAACTTGGA  143

seq1  GTACAAGGGAGCTTCTTTGTACTGGGGCCTGAAGGGCTCCGGCTATACCG  196
      ||||||||||||||||||||||| ||||  ||||||||||||||||||||
seq2  GTACAAGGGAGCTTCTTTGTACT-GGGCTGGAAGGGCTCCGGCTATACCG  192

seq1  AGTGAATAAAGGTGGGGTGGGGTAGATTGGAGGGTGCAGAAGAGACTTGA  246
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  AGTGAATAAAGGTGGGGT-GGGTAGATTGGA-GGTGCAGAAGAGACTTGA  240

seq1  GTCGGAATTCAGAGTGTTTCTTGGGCATCAAAGGGGTTGGCAGGCCCGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAATTCAGAGTGTTTCTTGGGCATCAAAGGGGTTGGCAGGCCCGGC  290

seq1  TGGG-AAGTCAAAACTGTGATTAGGAAGTGGATATTTCCTGAACCCAAGC  345
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTCAAAACTGTGATTAGGAAGTGGATATTTCCTGAACCCAAGC  340

seq1  CAGTTCAGGCGCTCCACATCCTCTGCGTTGGCCCTGGGCAGGCAGGGTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGGCGCTCCACATCCTCTGCGTTGGCCCTGGGCAGGCAGGGTGC  390

seq1  ACAGGTTTCAGGGGAGTTAGGTTGAGCCTCACGTGGGGCTCCCGGGTCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTCAGGGGAGTTAGGTTGAGCCTCACGTGGGGCTCCCGGGTCAG  440

seq1  GTGAGGTCGGGTTTGCGCTGTGGCTAAGGAGACTCAGACCTCCTGCCAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCGGGTTTGCGCTGTGGCTAAGGAGACTCAGACCTCCTGCCAAC  490

seq1  TCACCATTGAGCTTCTCCCCGAAGAGTGTGAGGAAGACGGTGAAGTTGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTGAGCTTCTCCCCGAAGAGTGTGAGGAAGACGGTGAAGTTGAT  540

seq1  GGGACCCTTCCCTTCCTGCAGCATGGCGTCCAGCTCTTCCTCCGGAACAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTTCCCTTCCTGCAGCATGGCGTCCAGCTCTTCCTCCGGAACAC  590

seq1  TTACCCTCCCTAGGAGAGTAGGTCTTGAGGTGACCCAGGCCGCCCTCCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCCCTAGGAGAGTAGGTCTTGAGGTGACCCAGGCCGCCCTCCCG  640

seq1  GGCTTCCCAGGCAGTGAGGGCAGAGGCAGGGGCAGCTCTAGCTGTGTGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCAGGCAGTGAGGGCAGAGGCAGGGGCAGCTCTAGCTGTGTGGC  690

seq1  AGGTGGGGGAGGGGGATTCCTGCCTGAATGAGGCTAAGTAGGAGAGAAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGGAGGGGGATTCCTGCCTGAATGAGGCTAAGTAGGAGAGAAAG  740

seq1  GGCGGGGCACTGTCCTCTCTCGGAGCAAGTGCCTGAGGTGAACAAGCCGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGCACTGTCCTCTCTCGGAGCAAGTGCCTGAGGTGAACAAGCCGG  790

seq1  GTCCCTGGGAGGTTGCTCCTGGACCCACTCACCGAGCTGGGAATAGGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGGAGGTTGCTCCTGGACCCACTCACCGAGCTGGGAATAGGTCT  840

seq1  CCTTCAGGTCTGATTTGCAGATGATCCCATCCCTGTTCTGGTCAATGCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGTCTGATTTGCAGATGATCCCATCCCTGTTCTGGTCAATGCAG  890

seq1  CTGAAGGCCTGTGAGGAGATGGCCTGCAGGTGGGAGCTGCTCACCCCATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCCTGTGAGGAGATGGCCTGCAGGTGGGAGCTGCTCACCCCATC  940

seq1  TCTTCCAGGGATGGCGGGTAAGGGAGAGTCTCGGGTAGTATGAGCGAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGGATGGCGGGTAAGGGAGAGTCTCGGGTAGTATGAGCGAGGT  990

seq1  TGGAGGCAGGAGCACTGACCCTCAGAGGAGAGCCGTGTGCATGGGGTATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGGAGCACTGACCCTCAGAGGAGAGCCGTGTGCATGGGGTATG  1040

seq1  AAGTGGCTCCCCGGATCGGGGAGAGGCTGTTTGGGATAGGCTACTCACTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTCCCCGGATCGGGGAGAGGCTGTTTGGGATAGGCTACTCACTT  1090

seq1  CCTTGAATTC  1105
      ||||||||||
seq2  CCTTGAATTC  1100

seq1: chr11_5655879_5656812
seq2: B6Ng01-199H11.g_63_1005

seq1  GAATTCTGTCTTTCTGTGGACCTTGATACACACCCAAGCATCAGATGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTTCTGTGGACCTTGATACACACCCAAGCATCAGATGATA  50

seq1  GAGGAGGTGGGTCATCACCACTTAAGTGCTAGGTGTCTCACACTTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTGGGTCATCACCACTTAAGTGCTAGGTGTCTCACACTTTTTGG  100

seq1  GGTCCTGGTTGAGGACCCTTTCCCTAGGCTGACTTATGTCAGATAAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGTTGAGGACCCTTTCCCTAGGCTGACTTATGTCAGATAAGTTC  150

seq1  TTGCGTCTAATTTGTTTGATATGATTTTAATCTACCCACATGCTCCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTCTAATTTGTTTGATATGATTTTAATCTACCCACATGCTCCCAAT  200

seq1  GTCTCCACTCACCCCAATAAATTCATAGGCTGGCCCCCTCTCTTCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACTCACCCCAATAAATTCATAGGCTGGCCCCCTCTCTTCTTCCA  250

seq1  GGAGTCTGCCATTAACCAGCCTGTGCTGCATGGGCGGTGCCTACCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGCCATTAACCAGCCTGTGCTGCATGGGCGGTGCCTACCCCTAC  300

seq1  TGTTGAAAGATGGTGGTGTTTACTTGTGCATCCAGAGCAAGATCCTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAGATGGTGGTGTTTACTTGTGCATCCAGAGCAAGATCCTTCAA  350

seq1  TTTCAAAATCAAGTCAAAAGCTGCTTATAAATGCTCTCAGGGCAACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATCAAGTCAAAAGCTGCTTATAAATGCTCTCAGGGCAACCCAG  400

seq1  GCTGAAAACCAGTTTTAAACAACATGGGGTGACTCATAGTAGGGAATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAACCAGTTTTAAACAACATGGGGTGACTCATAGTAGGGAATAGC  450

seq1  CCGATCTCAACAGTGAGCGCAAGGCAGGCATTGCTGCATACGACCATCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCTCAACAGTGAGCGCAAGGCAGGCATTGCTGCATACGACCATCGC  500

seq1  CAATACAAGACAATAGAGTGGGAAGGGAGAGAAGGCTTGCACAAGGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAGACAATAGAGTGGGAAGGGAGAGAAGGCTTGCACAAGGTTTC  550

seq1  TGGTGTGTATGTGTGTGTATACTGGGCATATACATGCACATGTGTGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTATGTGTGTGTATACTGGGCATATACATGCACATGTGTGGGTG  600

seq1  CATGTGTGAAGATCAGAAAACATTTTGTGGAGTCAGTTCTCTCCTACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGAAGATCAGAAAACATTTTGTGGAGTCAGTTCTCTCCTACCTT  650

seq1  CAGGTGGCCTCTGGAAGCCTAACACAAGTCACCAGACTTGTGCAGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCCTCTGGAAGCCTAACACAAGTCACCAGACTTGTGCAGCAAGA  700

seq1  GCC-TTTCCCTGCTGTGCCAACGCACTGG-CCCATACAGGAGACTCTAAG  748
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCTTTTCCCTGCTGTGCCAACGCACTGGCCCCATACAGGAGACTCTAAG  750

seq1  TGAGGGGTGTACGCCCTTGAAGGAGGTGATGGGATTTCTTCCTCCTCCTC  798
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGAGGGGTGTACGCCCTTGAAGGA-GTGATGGGATTTCTTCCTCCTCCTC  799

seq1  -TTTTTTTTTTTTTCCCCA-TTTTCTGGCTGCAGTAAGATGAGCTGCTGT  846
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTCCCCATTTTTCTGGCTGCAGTAAGATGAGCTGCTGT  849

seq1  GTCCTCCT--GCTTCTACAATGTACTGACTTATCACAGGCCC-TATA-TC  892
      ||||||||   || | ||||||||||||||| |||||||||| |||| ||
seq2  GTCCTCCTTGTCTCCAACAATGTACTGACTTTTCACAGGCCCTTATATTC  899

seq1  AAT-GGATGTTCAACTGTGG-ATTGAAACTTCCAAAACCAAAAT  934
      ||| |||||||||||||||| ||||||||||||| |||||||||
seq2  AATGGGATGTTCAACTGTGGAATTGAAACTTCCATAACCAAAAT  943