BAC Information

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BAC

Clone NameB6Ng01-200H12
Chromosome11 (Build37)
Map Location 61,019,311 - 61,179,181
singlet/doubletdoublet
Overlap geneLOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik
Upstream geneSrebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22
Downstream geneLOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200H12.bB6Ng01-200H12.g
ACCGA021520GA021521
length1,098850
definitionB6Ng01-200H12.b B6Ng01-200H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,019,311 - 61,020,376)(61,178,098 - 61,179,181)
sequence
gaattctggtctctatcggaatcaggcagaatttagcatccttatccttt
ctgttcctctcaaggtgctttcggacagcaacagctttcttaatcaaatg
gtagagatcctcggggaggtcaggggcaaggcctttggacttgaggattc
tcaagattttatttccagtcacaaaacggacctgggccaccccgtgtgag
tccctcaggattacacctatctgggagggagtcaggcctttcttggccaa
tttgtaaatctgttccttcacatcatcagacgtcaacttcagccacgtgg
ggacgctatggcggtagggcagcgctgactgggacaggcccttcccggga
gcgtgcatgtgacccatgatggcggaggtctggcagcaaagagtcaggga
cttttctaactcatggctgatgctaacatatgcagatggtccttcatgga
cagaaggctaacaaaccaacataagccaaaaacatcttaagtcaggtcaa
gggctgtggcccagggattgctgttgccaaggtcaaaccttcagggactc
aaagattgcattttctcccatgaagcaacaaagggcagtaataaatgtca
agtgggaagagagacagcctttcaccaacaaaaatccatctaatgtgttt
aaggaggtatcattgggagtgtaagtggccaggatgagcagactggtggt
ggcctagcagccagggcagggaaaactggaagcaggtattgtgaatggat
tatcggggcttgcaaaacaaacattaacattggacagcaggcatctgcaa
gtttctgttacagtcaagcttatttccagaactggaacattcctttttct
attaatgctccgtactgggcaagcactctactgttcaccacatttcatcc
ctaaaggcatttttttttttaaccgaaataaagaagaggaaaacaaaccc
tggagactttgtttctttcacaattttaaaatggttcctgaaggcttact
tgaccctacattagtcagttagccaagaataccattgttcattggattcc
cgaatcgaaaacacaaaaccaaacaatttactagaatggtgtccatct
gaattcactcttgtcacttcagtagcatcttatttaccaggtctcttatt
ctctgcttaccctgggcccctcaaatgcagtctggctgcttttccatacc
tgagatatgaagctgattgcagactcccttacaggaagtcaccaggagct
cactctcccgatgaccatggagctcaggagaactgtcacactttagtctt
ggtcctgtcacctggagacagccagggacaaagctgcagttgagtttcat
tcatttattcatgcatcgagggcccagtggtgttggggtgtctcaccaga
ccaggaggaggtgcgaagtagccaggagtgatggtgcatgcctgcaatcc
tagcatccaggacacagaggcagggggattatgagttcagattcaacctg
gcctatatagtgaagtcctgccttataaaagtagtttatagatgattatg
actaggtaagaaagctttggtttgcaggcccagagcacagcaagaccctg
catgaggggggagttgccagggtctctccatttggagactacaaagctga
gggaggcatagaggtaggtgcacgcagatcactgtgtcgagggcctcttt
tttttttttcttttcttttttttttttttttaagtgctggggatgggagt
caggcccttgggaatgtgaggctaacatcattttacaaactgagctatac
ccccagcccaggcgatgttgatctaggtaagagtagagtggttttggttt
tttttccccaaagcccaatttttggatggccctgtgattctcatatcaga
atctcagtgagaaagcagctatccaaagaagtaggggctgataccctctg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61019311_61020376
seq2: B6Ng01-200H12.b_44_1141

seq1  GAATTCTGGTCTCTATCGGAATCAGGCAGAATTTAGCATCCTTATCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCTCTATCGGAATCAGGCAGAATTTAGCATCCTTATCCTTT  50

seq1  CTGTTCCTCTCAAGGTGCTTTCGGACAGCAACAGCTTTCTTAATCAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTCTCAAGGTGCTTTCGGACAGCAACAGCTTTCTTAATCAAATG  100

seq1  GTAGAGATCCTCGGGGAGGTCAGGGGCAAGGCCTTTGGACTTGAGGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATCCTCGGGGAGGTCAGGGGCAAGGCCTTTGGACTTGAGGATTC  150

seq1  TCAAGATTTTATTTCCAGTCACAAAACGGACCTGGGCCACCCCGTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTTTATTTCCAGTCACAAAACGGACCTGGGCCACCCCGTGTGAG  200

seq1  TCCCTCAGGATTACACCTATCTGGGAGGGAGTCAGGCCTTTCTTGGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGGATTACACCTATCTGGGAGGGAGTCAGGCCTTTCTTGGCCAA  250

seq1  TTTGTAAATCTGTTCCTTCACATCATCAGACGTCAACTTCAGCCACGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATCTGTTCCTTCACATCATCAGACGTCAACTTCAGCCACGTGG  300

seq1  GGACGCTATGGCGGTAGGGCAGCGCTGACTGGGACAGGCCCTTCCCGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCTATGGCGGTAGGGCAGCGCTGACTGGGACAGGCCCTTCCCGGGA  350

seq1  GCGTGCATGTGACCCATGATGGCGGAGGTCTGGCAGCAAAGAGTCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCATGTGACCCATGATGGCGGAGGTCTGGCAGCAAAGAGTCAGGGA  400

seq1  CTTTTCTAACTCATGGCTGATGCTAACATATGCAGATGGTCCTTCATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAACTCATGGCTGATGCTAACATATGCAGATGGTCCTTCATGGA  450

seq1  CAGAAGGCTAACAAACCAACATAAGCCAAAAACATCTTAAGTCAGGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTAACAAACCAACATAAGCCAAAAACATCTTAAGTCAGGTCAA  500

seq1  GGGCTGTGGCCCAGGGATTGCTGTTGCCAAGGTCAAACCTTCAGGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGGCCCAGGGATTGCTGTTGCCAAGGTCAAACCTTCAGGGACTC  550

seq1  AAAGATTGCATTTTCTCCCATGAAGCAACAAAGGGCAGTAATAAATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGCATTTTCTCCCATGAAGCAACAAAGGGCAGTAATAAATGTCA  600

seq1  AGTGGGAAGAGAGACAGCCTTTCACCAACAAAAATCCATCTAATGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGAGAGACAGCCTTTCACCAACAAAAATCCATCTAATGTGTTT  650

seq1  AAGGAGGTATCA-TGGGAGTGTAAGTGGCCAGGATGAGCAGACTGGTGGT  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTATCATTGGGAGTGTAAGTGGCCAGGATGAGCAGACTGGTGGT  700

seq1  GGCCTAGCAGCCAGGGCAGGGAAAACTGGAAGCAGGTATTGTGAATGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGCAGCCAGGGCAGGGAAAACTGGAAGCAGGTATTGTGAATGGAT  750

seq1  TATCGGGGCTTGCAAAACAAACATTAACATTGGACAGCAGGCATCTGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGGGCTTGCAAAACAAACATTAACATTGGACAGCAGGCATCTGCAA  800

seq1  GTTTCTGTTACAGTCAAGCT--ATTCCAGAACTGGAACATTCC-TTTTCT  846
      ||||||||||||||||||||   |||||||||||||||||||| ||||||
seq2  GTTTCTGTTACAGTCAAGCTTATTTCCAGAACTGGAACATTCCTTTTTCT  850

seq1  A-TAATGCTCCGTACTGGGCAAGCACTCTACTGTTCACCACA-TTCATCC  894
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTAATGCTCCGTACTGGGCAAGCACTCTACTGTTCACCACATTTCATCC  900

seq1  CT-AAGGCA--TTTTTTTTTAACCGAAA-AAAGAAGAGGAAA--CAACCC  938
      || ||||||  ||||||||||||||||| |||||||||||||   |||||
seq2  CTAAAGGCATTTTTTTTTTTAACCGAAATAAAGAAGAGGAAAACAAACCC  950

seq1  TGGAGACTTTG-TTCTTCAACAATTT--AAATGGTTCC--GAGGC-TACT  982
      ||||||||||| |||||  |||||||  ||||||||||   |||| ||||
seq2  TGGAGACTTTGTTTCTTTCACAATTTTAAAATGGTTCCTGAAGGCTTACT  1000

seq1  TGA-CCTACATTAAGCAG-TAG-CAAG-ATACCATTG-TCATTG--ATCA  1025
      ||| |||||||||  ||| ||| |||| ||||||||| ||||||   || 
seq2  TGACCCTACATTAGTCAGTTAGCCAAGAATACCATTGTTCATTGGATTCC  1050

seq1  CGA----CAGAAGCAAAACCAAACAA-TTACTAGA--TGTGTCCATCT  1066
      |||     | |  ||||||||||||| ||||||||   ||||||||||
seq2  CGAATCGAAAACACAAAACCAAACAATTTACTAGAATGGTGTCCATCT  1098

seq1: chr11_61178098_61179181
seq2: B6Ng01-200H12.g_65_914 (reverse)

seq1  CAGAGGAAATGGGGCCTTTCTTAGTGATCAAGTATCTGCCCTGAGCAACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCCCTGGGCTATACCTTCAACACTGAAGAAAAAAATTAAGTAGAAAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGAAAATAATATTTAGGGCATTGTCTTAAAATTGCACTGGAGTAAAGACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCACAGCCTGCCCTCACATGCATCAGGAGGGTGAAACCCAGGAGCTGCGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTACACGCGGAGCGGGGACGCCAGCCTCTTGCTTCTCCACAGA-GGTATC  249
                                             |||| ||||||
seq2  ---------------------------------------CAGAGGGTATC  11

seq1  AGCCCCTACTTCTTTGGAT-GCTGCTTTCTCACTGAGATCCTGATATGAG  298
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AGCCCCTACTTCTTTGGATAGCTGCTTTCTCACTGAGATTCTGATATGAG  61

seq1  AATCACA-GGCCATCC-AAAATTTGGCTTTGGGG-AAAAAAACCAAAACC  345
      ||||||| |||||||| |||||| |||||||||| |||||||||||||||
seq2  AATCACAGGGCCATCCAAAAATTGGGCTTTGGGGAAAAAAAACCAAAACC  111

seq1  ACTCTACTCTTACCTAGATCAACATCGCCTGGGCTGGGGGTATAGCTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTCTTACCTAGATCAACATCGCCTGGGCTGGGGGTATAGCTCAG  161

seq1  TTTGTAAAATGATGTTAGCCTCACATTCCCAAGGGCCTGACTCCCATCCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAATGATGTTAGCCTCACATTCCCAAGGGCCTGACTCCCATCCC  211

seq1  CAGCACTTAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAGAGGCCCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAGAGGCCCT  261

seq1  CGACACAGTGATCTGCGTGCACCTACCTCTATGCCTCCCTCAGCTTTGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACAGTGATCTGCGTGCACCTACCTCTATGCCTCCCTCAGCTTTGTA  311

seq1  GTCTCCAAATGGAGAGACCCTGGCAACTCCCCCCTCATGCAGGGTCTTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAATGGAGAGACCCTGGCAACTCCCCCCTCATGCAGGGTCTTGC  361

seq1  TGTGCTCTGGGCCTGCAAACCAAAGCTTTCTTACCTAGTCATAATCATCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGGGCCTGCAAACCAAAGCTTTCTTACCTAGTCATAATCATCT  411

seq1  ATAAACTACTTTTATAAGGCAGGACTTCACTATATAGGCCAGGTTGAATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTACTTTTATAAGGCAGGACTTCACTATATAGGCCAGGTTGAATC  461

seq1  TGAACTCATAATCCCCCTGCCTCTGTGTCCTGGATGCTAGGATTGCAGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCATAATCCCCCTGCCTCTGTGTCCTGGATGCTAGGATTGCAGGC  511

seq1  ATGCACCATCACTCCTGGCTACTTCGCACCTCCTCCTGGTCTGGTGAGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCATCACTCCTGGCTACTTCGCACCTCCTCCTGGTCTGGTGAGAC  561

seq1  ACCCCAACACCACTGGGCCCTCGATGCATGAATAAATGAATGAAACTCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACACCACTGGGCCCTCGATGCATGAATAAATGAATGAAACTCAA  611

seq1  CTGCAGCTTTGTCCCTGGCTGTCTCCAGGTGACAGGACCAAGACTAAAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTTGTCCCTGGCTGTCTCCAGGTGACAGGACCAAGACTAAAGT  661

seq1  GTGACAGTTCTCCTGAGCTCCATGGTCATCGGGAGAGTGAGCTCCTGGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTTCTCCTGAGCTCCATGGTCATCGGGAGAGTGAGCTCCTGGTG  711

seq1  ACTTCCTGTAAGGGAGTCTGCAATCAGCTTCATATCTCAGGTATGGAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTAAGGGAGTCTGCAATCAGCTTCATATCTCAGGTATGGAAAA  761

seq1  GCAGCCAGACTGCATTTGAGGGGCCCAGGGTAAGCAGAGAATAAGAGACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGACTGCATTTGAGGGGCCCAGGGTAAGCAGAGAATAAGAGACC  811

seq1  TGGTAAATAAGATGCTACTGAAGTGACAAGAGTGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAAGATGCTACTGAAGTGACAAGAGTGAATTC  850