BAC Information

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BAC

Clone NameB6Ng01-200J04
Chromosome11 (Build37)
Map Location 97,780,594 - 97,953,186
singlet/doubletdoublet
Overlap genePlxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20
Upstream geneAtad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Downstream geneLOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200J04.bB6Ng01-200J04.g
ACCGA021594GA021595
length720970
definitionB6Ng01-200J04.b B6Ng01-200J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,952,475 - 97,953,186)(97,780,594 - 97,781,542)
sequence
gaattcattcactccaggcacctctatgtaggttctggggaacaaactta
ggtcacaaggcttggaaacaaatccttttatccactgagccattgagcca
tctcactgtccccaacctagaggttgaagacatactgctaatgaggtgta
gtggcatatgcctataatcccagctctcgggaggctgaggcaggaggatc
acctggagtttgaggccaacctggattatgtagtgatgtgcatttgcaga
acaagaacctagagtcgacccaccttcacaggacacattcctctggctcc
tgatgtgagtgagtctataggagttattttggttgatggttctctgtcca
gaacagaatacagaacccttatatgtttggtgggtcaggttatgtgtaag
ataccagtacctaatagccataaaaaacatcttagctaagtgtgcatttg
tgccctgaattgggtagtcagtatttagttccaacttcctaaaagtttgt
atataaaaagcttgggccctgttttgtcctatagataagaaagtgtttaa
tttggagaatggatttgtgtgtttgtgacaccatgatcttactgtgtagc
tctggctgtcttagaacttgatctgtagaccaggtttggccttgaactcc
taaagagttccttcctgccctctgcttgaaagtaaaagggggtgtgctat
cataccttgtgaggggtagg
gaattcctctttgatcttagaagctcgagtgaagactctccttccagaag
ctgagtagcaggctggagagatggctctgtggttaagagcactggctgct
gtagcagaggacctgggttctgttcccagcacttgtgtggcagctgacaa
ccatctgtaactcttctggcctttacaggcacccggcatgcacccggcac
acagatatacatgacatgcaggcatagtactcatactcataaaataaaca
ataaatcttaagtgtcattgtcgttatcatatcgtcaccatctttgtcat
catcaacatcatcgtcatcgtcatcatcatcaccaccatcaccatcttcg
tggcagtcctcagcagctgcaatcatggcttcctcctctagcacgctttc
ttccctcagtccatctccatctaaagcagatggagatgacagaggcagca
tcatgaagatcacctgtgtaatcaaagatgcacaaacagcttccaagagt
gaccactggaagtcatggctgtgcctctaactgggaggtctccacgggcc
aggggcattctgtcagaatctacagccatgttactctgtgactatgaggt
tatctgttacactgtggccatatggtttttttccactgttctgaggtaca
cagagaataatcttcaatttattatggagattttgaagacccgggtttgg
gtcttgtctaacttagctgtgtgaccttggatgagtcactccgtctgtca
ttacactaggatgggtcgttttgatttgtggcatacatgatgaatagata
aggctccattggacccctcagtttcttcatctggggaaatgggggaaaaa
catctctcgcaacaggctgtggatccagttaagtagaatttgtttctcac
gaaatctcccaaggctgcacatatgcattgtcttgacttcagtgtggctg
ggagtgggttgggactgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97952475_97953186
seq2: B6Ng01-200J04.b_49_768 (reverse)

seq1  CCTA-CCCTCACAAGGTATGATAGCACA-CCCCTTTTACTTTC-AGCAGA  47
      |||| ||||||||||||||||||||||| |||||||||||||| ||||||
seq2  CCTACCCCTCACAAGGTATGATAGCACACCCCCTTTTACTTTCAAGCAGA  50

seq1  -GGCAGG-AGGAACTC-TTAGGAGTTCAAGGCC-AACCTGGTCTACAGAT  93
       |||||| |||||||| |||||||||||||||| ||||||||||||||||
seq2  GGGCAGGAAGGAACTCTTTAGGAGTTCAAGGCCAAACCTGGTCTACAGAT  100

seq1  CAAGTTCTAAGACAGCCAGAGCTACACAGTAAGATCATGGTGTCACAAAC  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTAAGACAGCCAGAGCTACACAGTAAGATCATGGTGTCACAAAC  150

seq1  ACACAAATCCATTCTCCAAATT-AACACTTTCTTATCTATAGGACAAAAC  192
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACACAAATCCATTCTCCAAATTAAACACTTTCTTATCTATAGGACAAAAC  200

seq1  AGGGCCCAAGCTTTTTATATACAAACTTTTAGGAAGTTGGAACTAAATAC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCAAGCTTTTTATATACAAACTTTTAGGAAGTTGGAACTAAATAC  250

seq1  TGACTACCCAATTCAGGGCACAAATGCACACTTAGCTAAGATGTTTTTTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACCCAATTCAGGGCACAAATGCACACTTAGCTAAGATGTTTTTTA  300

seq1  TGGCTATTAGGTACTGGTATCTTACACATAACCTGACCCACCAAACATAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTAGGTACTGGTATCTTACACATAACCTGACCCACCAAACATAT  350

seq1  AAGGGTTCTGTATTCTGTTCTGGACAGAGAACCATCAACCAAAATAACTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCTGTATTCTGTTCTGGACAGAGAACCATCAACCAAAATAACTC  400

seq1  CTATAGACTCACTCACATCAGGAGCCAGAGGAATGTGTCCTGTGAAGGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACTCACTCACATCAGGAGCCAGAGGAATGTGTCCTGTGAAGGTG  450

seq1  GGTCGACTCTAGGTTCTTGTTCTGCAAATGCACATCACTACATAATCCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGACTCTAGGTTCTTGTTCTGCAAATGCACATCACTACATAATCCAG  500

seq1  GTTGGCCTCAAACTCCAGGTGATCCTCCTGCCTCAGCCTCCCGAGAGCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCTCAAACTCCAGGTGATCCTCCTGCCTCAGCCTCCCGAGAGCTG  550

seq1  GGATTATAGGCATATGCCACTACACCTCATTAGCAGTATGTCTTCAACCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATAGGCATATGCCACTACACCTCATTAGCAGTATGTCTTCAACCT  600

seq1  CTAGGTTGGGGACAGTGAGATGGCTCAATGGCTCAGTGGATAAAAGGATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGGGGACAGTGAGATGGCTCAATGGCTCAGTGGATAAAAGGATT  650

seq1  TGTTTCCAAGCCTTGTGACCTAAGTTTGTTCCCCAGAACCTACATAGAGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAAGCCTTGTGACCTAAGTTTGTTCCCCAGAACCTACATAGAGG  700

seq1  TGCCTGGAGTGAATGAATTC  712
      ||||||||||||||||||||
seq2  TGCCTGGAGTGAATGAATTC  720

seq1: chr11_97780594_97781542
seq2: B6Ng01-200J04.g_72_1040

seq1  GAATTCCTCTTTGATCTTAGAAGCTCGAGTGAAGACTCTCCTTCCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTGATCTTAGAAGCTCGAGTGAAGACTCTCCTTCCAGAAG  50

seq1  CTGAGTAGCAGGCTGGAGAGATGGCTCTGTGGTTAAGAGCACTGGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGCAGGCTGGAGAGATGGCTCTGTGGTTAAGAGCACTGGCTGCT  100

seq1  GTAGCAGAGGACCTGGGTTCTGTTCCCAGCACTTGTGTGGCAGCTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGGACCTGGGTTCTGTTCCCAGCACTTGTGTGGCAGCTGACAA  150

seq1  CCATCTGTAACTCTTCTGGCCTTTACAGGCACCCGGCATGCACCCGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAACTCTTCTGGCCTTTACAGGCACCCGGCATGCACCCGGCAC  200

seq1  ACAGATATACATGACATGCAGGCATAGTACTCATACTCATAAAATAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATACATGACATGCAGGCATAGTACTCATACTCATAAAATAAACA  250

seq1  ATAAATCTTAAGTGTCATTGTCGTTATCATATCGTCACCATCTTTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTAAGTGTCATTGTCGTTATCATATCGTCACCATCTTTGTCAT  300

seq1  CATCAACATCATCGTCATCGTCATCATCATCACCACCATCACCATCTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACATCATCGTCATCGTCATCATCATCACCACCATCACCATCTTCG  350

seq1  TGGCAGTCCTCAGCAGCTGCAATCATGGCTTCCTCCTCTAGCACGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCCTCAGCAGCTGCAATCATGGCTTCCTCCTCTAGCACGCTTTC  400

seq1  TTCCCTCAGTCCATCTCCATCTAAAGCAGATGGAGATGACAGAGGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAGTCCATCTCCATCTAAAGCAGATGGAGATGACAGAGGCAGCA  450

seq1  TCATGAAGATCACCTGTGTAATCAAAGATGCACAAACAGCTTCCAAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGATCACCTGTGTAATCAAAGATGCACAAACAGCTTCCAAGAGT  500

seq1  GACCACTGGAAGTCATGGCTGTGCCTCTAACTGGGAGGTCTCCACGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGGAAGTCATGGCTGTGCCTCTAACTGGGAGGTCTCCACGGGCC  550

seq1  AGGGGCATTCTGTCAGAATCTACAGCCATGTTACTCTGTGACTATGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATTCTGTCAGAATCTACAGCCATGTTACTCTGTGACTATGAGGT  600

seq1  TATCTGTTACACTGTGGCCATATGG-TTTTTTCCACTGTTCTGAGGTACA  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATCTGTTACACTGTGGCCATATGGTTTTTTTCCACTGTTCTGAGGTACA  650

seq1  CAGAGAATAATCTTCAA-TTATTATGGAGATTTTGAAGACCCGGGTTTGG  698
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGAGAATAATCTTCAATTTATTATGGAGATTTTGAAGACCCGGGTTTGG  700

seq1  GTCTTGTCTAAC-TAGCTGTGTGACCTTGGATGAGTCACTCCGTCTGTCA  747
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTAACTTAGCTGTGTGACCTTGGATGAGTCACTCCGTCTGTCA  750

seq1  -TACACTAGGATGGGTCG-TTTGATTTGTGGCATACATGATGAATAGATA  795
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTACACTAGGATGGGTCGTTTTGATTTGTGGCATACATGATGAATAGATA  800

seq1  AGGCTCCATTGGA-CCCTCAGTTTCTTCATCT-GGGAAATGGGG--AAAA  841
      ||||||||||||| |||||||||||||||||| |||||||||||  ||||
seq2  AGGCTCCATTGGACCCCTCAGTTTCTTCATCTGGGGAAATGGGGGAAAAA  850

seq1  CATCTC-CGCAACAGGCTGT-GATCCAG-TAAGTAGAA-TTGTTTCCCAC  887
      |||||| ||||||||||||| ||||||| ||||||||| ||||||| |||
seq2  CATCTCTCGCAACAGGCTGTGGATCCAGTTAAGTAGAATTTGTTTCTCAC  900

seq1  G-AATC-CCCAAGGCTGCACAAATGCA-TGTC-TGAC-TCAGTGTGGCT-  931
      | |||| |||||||||||||| ||||| |||| |||| ||||||||||| 
seq2  GAAATCTCCCAAGGCTGCACATATGCATTGTCTTGACTTCAGTGTGGCTG  950

seq1  GGAGTGGG-TGGGACTGGG  949
      |||||||| ||||||||||
seq2  GGAGTGGGTTGGGACTGGG  969