BAC Information

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BAC

Clone NameB6Ng01-200N05
Chromosome11 (Build37)
Map Location 9,814,815 - 9,972,577
singlet/doubletdoublet
Overlap genenone
Upstream genePkd1l1, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
Downstream geneLOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200N05.bB6Ng01-200N05.g
ACCGA021777GA021778
length1,1251,007
definitionB6Ng01-200N05.b B6Ng01-200N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,971,482 - 9,972,577)(9,814,815 - 9,815,806)
sequence
gaattcttaacagagaggaaaaccatgttattgtgttgttctataagaga
agaagaagaaacaggatgtcaggaccagcacagagtgatctagaaaaaaa
gacagattggaaataacagaaggggaatatatgatgttatgtttacagca
tctttcttgtaataagctgataaaaacggcttttaaataagtatgtcttc
atttcccaactgaagtaaacccatgggaggaatcttaaagctttcacact
gcagagatttggctataaacacttaggaggtttgttgaacctacacttaa
ataaggccttgatttattctatcatactctccttcataacaaagctatgt
tgaaaactaacataattcataagcttttctgtaaggtcagcctgaggttt
cagtgactcactcattcaagcacaaaattagtttcacatgaggaaaatct
gttacagtacaaagcttagaaacaaagtttcatgtgagaaatacgcctgg
aaggaaacagatggctcggtcaaagcatggatgaatgaaaggctaatgag
ttcgatttacagtgatggggcagttagaaaaggcaaatgcacactagcaa
ggactaggccttccctccagatctcagggtcaatgcaatggacacatgtt
ccataacctatcaggaactaaatctctgggtaaaggaagacagagtgccc
aataagaaaaaaatgttatccaaaatggctaaatccaatttcagcaaaat
aaatttttttttttaaaaaaggagagggtagggatgaataccataatctc
tttcacataagctctgctgttttctccatcatgtaaagacaataacaaga
aagaaggaagagagatggcaccagagcatcttcccatgaagccatactaa
acatcttactacaagattcataatatagaaattaaacaatggcagacgcc
tgtgagtcttgtacactacccagcattgggaaagaattgtcctctgttaa
aaacattccaggtgttcagcttatgaacagcccagaacaaggtgattgtt
cagaatttggcatttttcttggaagaacatggcaaaggttctgctcgtga
atccttttgggcctgttcatacatt

gaattctcttccttctaaaaactggtgctaaacagttctatgatgttgtc
attggactaaaaatgtaatgtacaaacactgaaattgaatatttttagta
tgaaccataatcttatttatgatttccctaatcaattttacattgatcat
gggtaatataatataaaattttatttgtgcatgtatgtgtaaatgtgtat
atgtgatcatatgtgtgtaaacgtgtgtctagatgtgcatttattaatta
ttttatttacttttatatttatttttatttttttgtttgttttttgaaac
agggtttctctgtatagtcctggctgtcctggaactcacttattagacca
gactggcctcaaactcagaaatccacctgcctctgcctcccgagtgctgg
gattaaaggcgtgtgccaccacgcccagctgattttgttatttttgtcta
ctcaagattcagactgattcttgcctcacacttatgtagcaagcacttta
tcaactgagacatctcctcagttctgatctgaaagtttctaccttttttc
catcaggacaatttataccatgttgtccaaaacatatagaaatatatttt
acctttctgtattggagagatttttaagacaaatatatcctggacagaag
aaatatcaaatgtttagaacaatctttttgtaattttttacttcctttac
tatttaagtctgttttcaattagcttctaactacctttaagcttgagatt
attttattttttttattagatattttctttatatacattttcaaatgcta
tccccaaaagttccctataccctccctccaacctgctcctcctacccatt
cactcccgctcttggccctgggcatccccttgtactggggcatataaagt
ttgcaattatcaaggggccctcttcttccctagtgatgggccaattaagc
catcttctcctaacatataacagctaagagacatgagctctcgaggggta
ctgatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9971482_9972577
seq2: B6Ng01-200N05.b_47_1171 (reverse)

seq1  AATGTA-GAACAGG-CCAAAAGGA-TCACGAGCAGAACCTT--GCATG-T  44
      |||||| ||||||| ||||||||| ||||||||||||||||   |||| |
seq2  AATGTATGAACAGGCCCAAAAGGATTCACGAGCAGAACCTTTGCCATGTT  50

seq1  CTTC--AG-AAAATGC--AAATCTGAAC-ATCACCTTG-TCT-GGCTGT-  85
      ||||  || |||||||  || ||||||| ||||||||| ||| |||||| 
seq2  CTTCCAAGAAAAATGCCAAATTCTGAACAATCACCTTGTTCTGGGCTGTT  100

seq1  -CTAAGCTGACCA-CTGG-ATGTTTT--ACAGA-GACAAT--CTTCCCAA  127
        |||||||| || |||| |||||||  ||||| ||||||   |||||||
seq2  CATAAGCTGAACACCTGGAATGTTTTTAACAGAGGACAATTCTTTCCCAA  150

seq1  TGCTGGGTAGTGTAC-AGACTCACAGGCGTCTGCCATTGTTTAATTTCTA  176
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTAGTGTACAAGACTCACAGGCGTCTGCCATTGTTTAATTTCTA  200

seq1  TATTATGAATCTTGTAGT-AGATGTTTAGTATGGCTTCATGGG-AGATGC  224
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TATTATGAATCTTGTAGTAAGATGTTTAGTATGGCTTCATGGGAAGATGC  250

seq1  TCTGGTGCCATCTCTCTTCCTTCTTTCTTGTTATTGTCTTTACATGATGG  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCCATCTCTCTTCCTTCTTTCTTGTTATTGTCTTTACATGATGG  300

seq1  AGAAAACAGCAGAGCTTATGTGAAAGAGATTATGGTATTCAT-CCTACCC  323
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAAAACAGCAGAGCTTATGTGAAAGAGATTATGGTATTCATCCCTACCC  350

seq1  TCTCCTTTTTT-AAAAAAAAAATTTATTTTGCTGAAATTGGATTTAGCCA  372
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTTTAAAAAAAAAAATTTATTTTGCTGAAATTGGATTTAGCCA  400

seq1  TTTTGGATAACATTTTTTTCTTATTGGGCACTCTGTCTTCCTTTACCCAG  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATAACATTTTTTTCTTATTGGGCACTCTGTCTTCCTTTACCCAG  450

seq1  AGATTTAGTTCCTGATAGGTTATGGAACATGTGTCCATTGCATTGACCCT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGTTCCTGATAGGTTATGGAACATGTGTCCATTGCATTGACCCT  500

seq1  GAGATCTGGAGGGAAGGCCTAGTCCTTGCTAGTGTGCATTTGCCTTTTCT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGGAGGGAAGGCCTAGTCCTTGCTAGTGTGCATTTGCCTTTTCT  550

seq1  AACTGCCCCATCACTGTAAATCGAACTCATTAGCCTTTCATTCATCCATG  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCCCATCACTGTAAATCGAACTCATTAGCCTTTCATTCATCCATG  600

seq1  CTTTGACCGAGCCATCTGTTTCCTTCCAGG-ATCTTTCTCACATGAAACT  621
      ||||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  CTTTGACCGAGCCATCTGTTTCCTTCCAGGCGTATTTCTCACATGAAACT  650

seq1  TTGTTTCTAAGCTTTGTACTGTAACAGATTTTCCTCATGTGAAACTAATT  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAAGCTTTGTACTGTAACAGATTTTCCTCATGTGAAACTAATT  700

seq1  TTGTGCTTGAATGAGTGAGTCACTGAAACCTCAGGCTGACCTTACAGAAA  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGAATGAGTGAGTCACTGAAACCTCAGGCTGACCTTACAGAAA  750

seq1  AGCTTATGAATTATGTTAGTTTTCAACATAGCTTTGTTATGAAGGAGAGT  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATGAATTATGTTAGTTTTCAACATAGCTTTGTTATGAAGGAGAGT  800

seq1  ATGATAGAATAAATCAAGGCCTTATTTAAGTGTAGGTTCAACAAACCTCC  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAATAAATCAAGGCCTTATTTAAGTGTAGGTTCAACAAACCTCC  850

seq1  TAAGTGTTTATAGCCAAATCTCTGCAGTGTGAAAGCTTTAAGATTCCTCC  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTTATAGCCAAATCTCTGCAGTGTGAAAGCTTTAAGATTCCTCC  900

seq1  CATGGGTTTACTTCAGTTGGGAAATGAAGACATACTTATTTAAAAGCCGT  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTTACTTCAGTTGGGAAATGAAGACATACTTATTTAAAAGCCGT  950

seq1  TTTTATCAGCTTATTACAAGAAAGATGCTGTAAACATAACATCATATATT  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCAGCTTATTACAAGAAAGATGCTGTAAACATAACATCATATATT  1000

seq1  CCCCTTCTGTTATTTCCAATCTGTCTTTTTTTCTAGATCACTCTGTGCTG  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTGTTATTTCCAATCTGTCTTTTTTTCTAGATCACTCTGTGCTG  1050

seq1  GTCCTGACATCCTGTTTCTTCTTCTTCTCTTATAGAACAACACAATAACA  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGACATCCTGTTTCTTCTTCTTCTCTTATAGAACAACACAATAACA  1100

seq1  TGGTTTTCCTCTCTGTTAAGAATTC  1096
      |||||||||||||||||||||||||
seq2  TGGTTTTCCTCTCTGTTAAGAATTC  1125


seq1: chr11_9814815_9815806
seq2: B6Ng01-200N05.g_69_1075

seq1  GAATTCTCTTCCTTCTAAAAACTGGTGCTAAACAGTTCTATGATGTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTTCTAAAAACTGGTGCTAAACAGTTCTATGATGTTGTC  50

seq1  ATTGGACTAAAAATGTAATGTACAAACACTGAAATTGAATATTTTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTAAAAATGTAATGTACAAACACTGAAATTGAATATTTTTAGTA  100

seq1  TGAACCATAATCTTATTTATGATTTCCCTAATCAATTTTACATTGATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCATAATCTTATTTATGATTTCCCTAATCAATTTTACATTGATCAT  150

seq1  GGGTAATATAATATAAAATTTTATTTGTGCATGTATGTGTAAATGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATATAATATAAAATTTTATTTGTGCATGTATGTGTAAATGTGTAT  200

seq1  ATGTGATCATATGTGTGTAAACGTGTGTCTAGATGTGCATTTATTAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCATATGTGTGTAAACGTGTGTCTAGATGTGCATTTATTAATTA  250

seq1  TTTTATTTACTTTTATATTTATTTTTATTTTTTTGTTTGTTTTTTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTACTTTTATATTTATTTTTATTTTTTTGTTTGTTTTTTGAAAC  300

seq1  AGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTATTAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTATTAGACCA  350

seq1  GACTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGG  400

seq1  GATTAAAGGCGTGTGCCACCACGCCCAGCTGATTTTGTTATTTTTGTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCGTGTGCCACCACGCCCAGCTGATTTTGTTATTTTTGTCTA  450

seq1  CTCAAGATTCAGACTGATTCTTGCCTCACACTTATGTAGCAAGCACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATTCAGACTGATTCTTGCCTCACACTTATGTAGCAAGCACTTTA  500

seq1  TCAACTGAGACATCTCCTCAGTTCTGATCTGAAAGTTTCTACCTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAGACATCTCCTCAGTTCTGATCTGAAAGTTTCTACCTTTTTTC  550

seq1  CATCAGGACAATTTATACCATGTTGTCCAAAACATATAGAAATATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGACAATTTATACCATGTTGTCCAAAACATATAGAAATATATTTT  600

seq1  ACCTTTCTGTATTGGAGAGA-TTTTAAGACAAATATATCCTGGACAGAAG  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTTTCTGTATTGGAGAGATTTTTAAGACAAATATATCCTGGACAGAAG  650

seq1  AAATATCAAATGTTTAGAACAATC-TTTTGTAATTTTTTACTTCCTTTAC  698
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAATATCAAATGTTTAGAACAATCTTTTTGTAATTTTTTACTTCCTTTAC  700

seq1  TATTTAAGTCTGTTTTCAATTAGCTTCTAACTACCTTTAAGCTTGAGATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGTCTGTTTTCAATTAGCTTCTAACTACCTTTAAGCTTGAGATT  750

seq1  ATTTTATTTTTTTTATTAGATATTTTCTTTATATACA-TTTCAAATGCTA  797
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTTATTTTTTTTATTAGATATTTTCTTTATATACATTTTCAAATGCTA  800

seq1  T-CCCAAAAGTTCCCTATACCCTCCCTCCAACCTGCTCC-CCTACCCATT  845
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCCCAAAAGTTCCCTATACCCTCCCTCCAACCTGCTCCTCCTACCCATT  850

seq1  CACTCCCGCTTCTTGGCCCT-GGCATTCCCCTGTACTGGGGCATATAAAG  894
      ||||||||| |||||||||| ||||| ||| |||||||||||||||||||
seq2  CACTCCCGC-TCTTGGCCCTGGGCATCCCCTTGTACTGGGGCATATAAAG  899

seq1  TTTGCAA-TACCAAGGGGCCTCTCTT----CCTAGTGAT-GGCCAATTAG  938
      ||||||| || ||||||||| |||||    ||||||||| ||||||||| 
seq2  TTTGCAATTATCAAGGGGCC-CTCTTCTTCCCTAGTGATGGGCCAATTAA  948

seq1  GCCATCTTCTCCT-ACATAT-ACAGCT-AGAGACATGAGCTCT-GA-GGG  983
      ||||||||||||| |||||| |||||| ||||||||||||||| || |||
seq2  GCCATCTTCTCCTAACATATAACAGCTAAGAGACATGAGCTCTCGAGGGG  998

seq1  TACTGATTA  992
      |||||||||
seq2  TACTGATTA  1007


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