BAC Information

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BAC

Clone NameB6Ng01-201B10
Chromosome11 (Build37)
Map Location 94,771,307 - 94,925,984
singlet/doubletdoublet
Overlap geneCol1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3
Upstream geneMbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739
Downstream geneDlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201B10.bB6Ng01-201B10.g
ACCGA021960GA021961
length1,0311,107
definitionB6Ng01-201B10.b B6Ng01-201B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,924,966 - 94,925,984)(94,771,307 - 94,772,415)
sequence
gaattcaggacctagggaagaacagtcagtgttcttaaccactgagccat
ctctccagcctacagcagcactaaaatcttagctaaggatttgttagaag
caagagcaaaaatggccagtcccagtggcactgtcctgtgattccagcta
ttcagagcctgaggcaggaggattccataatcctgcctgggatgtgcagt
gagttcaggtccagcgtgggttacttagcaagaccctgtttcaagattaa
aaaaaaaaaaaaaaattcaaccttcagtacctcaaattaaagagagagag
agaaaaaaaaagctcctcctgtccttccacctccctcatgccttttccaa
cattcacagtgtcttaggactcctttcacacttacttcacttgtgcattg
gtgttttgctggggtgtgtgtctgtgggaaggtgtcagatcccctgaaac
tggaattacagacagttgtgagctgccatgtgggtgttgggaacagaacc
tgggtcctctggaatagcggcctgtgctcttaactattgagccatctctc
cagcccgttattttagtgtttataaatatcttcttaaaagcaaagagatc
aagtgaaatgttctggcctcccgcattctcttttcgtacatcataggcta
aaagcagtgtcatggtcaatacttacaggaccatccttttcaggttacag
aatacttcattctctcaagatacttgcttaaagagctggagagatagatg
gcttagcacccacaaggtggctcaaaactgtctataactctaactccaag
ggaacccaacgcccactttctggcctctgcaagcactgtatgcaggtggt
gcaacagatacacatgttaggcaaaaacacccatacctataatcacataa
accagcccaacagctggaaaggctggggcctgaggggcatgagcttcagg
gccctgtccgattccctggaactggaagttacagaccacctgtgagctac
agttgggtgttgggacctccaacctgggtct
gaattccaggccaatctgttctacttagcaagttcatggtgaaagaacga
ggagtggatgggaaatccagcaagatagcacagggtaaaagcacacattg
ccaagcctgagtacttgaactccttatctgggatctagaaggtgaaagaa
ctagctcgtgcaagatgtcatctgactagtgtgctgtggcatgtattaac
ctcccgtcccgaggtaaataaaaattaaaaaactgaaataagatccctga
aataagagtcttctcttttcttcctctctctctcttcctattttatttta
ttttattttattttattttattttatttttcctacctgtctccataccta
ggcaattcagcacagtggtaagagcagggtaggcactgtgactgtgctgg
tggtgagccacagtgtccagaacaagatgtccaaaaactggagagtaggg
gaagggtcagctgctgggagagcgaatgttgtgggcagcaatgacctagg
cagtttatcagtggcatggggaagggtgtccctgcagagacgtcatggca
tggaaagcatgcatgctttgggcaagcagtctaccactgcgatcctcatc
ccagcatgggtgctccgacagccacgagaccttattctcatgtcttagtt
ttctggtatcattttccaacaacaacaacaacaacaaaaaagaagcagaa
ctctgggtaactgacagacaggaggcaaagaatgtacctaataaactagt
gctattttgttccagagagtagggaactcctcaaagaataatgagtctgc
ctcagtcagcctgggctcctgtatgaagcatcacaatccgggcagctgaa
atggcaggcattttttcctacactgcactagaggccacggtcaaggtgct
gacgaagctgatctctctgcatcttctcccccatgtcttctcctgggtct
gcccatttttccatcctctgagtgtgccctaccctggtggtgtcttcttc
ctcttataagctgtcatgcttattgataggcctccaccttatgacttcat
ttacaatacctctggtgtggttcgaatagtagtgccactgcgaaggggcc
actgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94924966_94925984
seq2: B6Ng01-201B10.b_46_1076 (reverse)

seq1  AGACCCAGGTTTGA-GTCCCAACA-CCAACTGTAGCTCACA-GTGGTCTG  47
      ||||||||||| || ||||||||| |||||||||||||||| ||||||||
seq2  AGACCCAGGTTGGAGGTCCCAACACCCAACTGTAGCTCACAGGTGGTCTG  50

seq1  TAAC-TCCAGTTCCAGGGAATCGGACA-GGCCCTG-AGCTCATGCCCCTC  94
      |||| |||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TAACTTCCAGTTCCAGGGAATCGGACAGGGCCCTGAAGCTCATGCCCCTC  100

seq1  AGGCCCCAGCC-TTCCAGCTGTT-GGCTGGTTTATGTGATTATAGGTATG  142
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGGCCCCAGCCTTTCCAGCTGTTGGGCTGGTTTATGTGATTATAGGTATG  150

seq1  GGTG-TTTTGCCT-ACATGTGTATCTG-TGCACCACCTGCATACAGTGCT  189
      |||| |||||||| ||||||||||||| ||||||||||||||||||||||
seq2  GGTGTTTTTGCCTAACATGTGTATCTGTTGCACCACCTGCATACAGTGCT  200

seq1  TGCAGAGGCCAG-AAGTGGGCGTTGGGTTCCCTTGGAGTTAGAGTTATAG  238
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGCCAGAAAGTGGGCGTTGGGTTCCCTTGGAGTTAGAGTTATAG  250

seq1  ACAGTTTTGAGCCACCTTGTGGGTGCTAAGCCATCTATCTCTCCAGCTCT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGAGCCACCTTGTGGGTGCTAAGCCATCTATCTCTCCAGCTCT  300

seq1  TTAAGCAAGTATCTTGAGAGAATGAAGTATTCTGTAACCTGAAAAGGATG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAGTATCTTGAGAGAATGAAGTATTCTGTAACCTGAAAAGGATG  350

seq1  GTCCTGTAAGTATTGACCATGACACTGCTTTTAGCCTATGATGTACGAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAAGTATTGACCATGACACTGCTTTTAGCCTATGATGTACGAAA  400

seq1  AGAGAATGCGGGAGGCCAGAACATTTCACTTGATCTCTTTGCTTTTAAGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGCGGGAGGCCAGAACATTTCACTTGATCTCTTTGCTTTTAAGA  450

seq1  AGATATTTATAAACACTAAAATAACGGGCTGGAGAGATGGCTCAATAGTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTATAAACACTAAAATAACGGGCTGGAGAGATGGCTCAATAGTT  500

seq1  AAGAGCACAGGCCGCTATTCCAGAGGACCCAGGTTCTGTTCCCAACACCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACAGGCCGCTATTCCAGAGGACCCAGGTTCTGTTCCCAACACCC  550

seq1  ACATGGCAGCTCACAACTGTCTGTAATTCCAGTTTCAGGGGATCTGACAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGCTCACAACTGTCTGTAATTCCAGTTTCAGGGGATCTGACAC  600

seq1  CTTCCCACAGACACACACCCCAGCAAAACACCAATGCACAAGTGAAGTAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACAGACACACACCCCAGCAAAACACCAATGCACAAGTGAAGTAA  650

seq1  GTGTGAAAGGAGTCCTAAGACACTGTGAATGTTGGAAAAGGCATGAGGGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAGGAGTCCTAAGACACTGTGAATGTTGGAAAAGGCATGAGGGA  700

seq1  GGTGGAAGGACAGGAGGAGCTTTTTTTTTCTCTCTCTCTCTTTAATTTGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGGACAGGAGGAGCTTTTTTTTTCTCTCTCTCTCTTTAATTTGA  750

seq1  GGTACTGAAGGTTGAATTTTTTTTTTTTTTTTTAATCTTGAAACAGGGTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGAAGGTTGAATTTTTTTTTTTTTTTTTAATCTTGAAACAGGGTC  800

seq1  TTGCTAAGTAACCCACGCTGGACCTGAACTCACTGCACATCCCAGGCAGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGTAACCCACGCTGGACCTGAACTCACTGCACATCCCAGGCAGG  850

seq1  ATTATGGAATCCTCCTGCCTCAGGCTCTGAATAGCTGGAATCACAGGACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGAATCCTCCTGCCTCAGGCTCTGAATAGCTGGAATCACAGGACA  900

seq1  GTGCCACTGGGACTGGCCATTTTTGCTCTTGCTTCTAACAAATCCTTAGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTGGGACTGGCCATTTTTGCTCTTGCTTCTAACAAATCCTTAGC  950

seq1  TAAGATTTTAGTGCTGCTGTAGGCTGGAGAGATGGCTCAGTGGTTAAGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTTAGTGCTGCTGTAGGCTGGAGAGATGGCTCAGTGGTTAAGAA  1000

seq1  CACTGACTGTTCTTCCCTAGGTCCTGAATTC  1019
      |||||||||||||||||||||||||||||||
seq2  CACTGACTGTTCTTCCCTAGGTCCTGAATTC  1031

seq1: chr11_94771307_94772415
seq2: B6Ng01-201B10.g_68_1174

seq1  GAATTCCAGGCCAATCTGTTCTACTTAGCAAGTTCATGGTGAAAGAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAATCTGTTCTACTTAGCAAGTTCATGGTGAAAGAACGA  50

seq1  GGAGTGGATGGGAAATCCAGCAAGATAGCACAGGGTAAAAGCACACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGATGGGAAATCCAGCAAGATAGCACAGGGTAAAAGCACACATTG  100

seq1  CCAAGCCTGAGTACTTGAACTCCTTATCTGGGATCTAGAAGGTGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGAGTACTTGAACTCCTTATCTGGGATCTAGAAGGTGAAAGAA  150

seq1  CTAGCTCGTGCAAGATGTCATCTGACTAGTGTGCTGTGGCATGTATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCGTGCAAGATGTCATCTGACTAGTGTGCTGTGGCATGTATTAAC  200

seq1  CTCCCGTCCCGAGGTAAATAAAAATTAAAAAACTGAAATAAGATCCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTCCCGAGGTAAATAAAAATTAAAAAACTGAAATAAGATCCCTGA  250

seq1  AATAAGAGTCTTCTCTTTTCTTCCTCTCTCTCTCTTCCTATTTTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGTCTTCTCTTTTCTTCCTCTCTCTCTCTTCCTATTTTATTTTA  300

seq1  TTTTATTTTATTTTATTTTATTTTATTTTTCCTACCTGTCTCCATACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTATTTTATTTTATTTTTCCTACCTGTCTCCATACCTA  350

seq1  GGCAATTCAGCACAGTGGTAAGAGCAGGGTAGGCACTGTGACTGTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTCAGCACAGTGGTAAGAGCAGGGTAGGCACTGTGACTGTGCTGG  400

seq1  TGGTGAGCCACAGTGTCCAGAACAAGATGTCCAAAAACTGGAGAGTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCCACAGTGTCCAGAACAAGATGTCCAAAAACTGGAGAGTAGGG  450

seq1  GAAGGGTCAGCTGCTGGGAGAGCGAATGTTGTGGGCAGCAATGACCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTCAGCTGCTGGGAGAGCGAATGTTGTGGGCAGCAATGACCTAGG  500

seq1  CAGTTTATCAGTGGCATGGGGAAGGGTGTCCCTGCAGAGACGTCATGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATCAGTGGCATGGGGAAGGGTGTCCCTGCAGAGACGTCATGGCA  550

seq1  TGGAAAGCATGCATGCTTTGGGCAAGCAGTCTACCACTGCGATCCTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCATGCATGCTTTGGGCAAGCAGTCTACCACTGCGATCCTCATC  600

seq1  CCAGCATGGGTGCTCCGACAGCCACGAGACCTTATTCTCATGTCTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGGGTGCTCCGACAGCCACGAGACCTTATTCTCATGTCTTAGTT  650

seq1  TTCTGGTATCATTTTCCAACAACAACAACAACAACAAAAAAGAAGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATCATTTTCCAACAACAACAACAACAACAAAAAAGAAGCAGAA  700

seq1  CTCTGGGTAACTGACAGACAGGAGGCAAAGAATGTACCTAATAAACTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTAACTGACAGACAGGAGGCAAAGAATGTACCTAATAAACTAGT  750

seq1  GCTATTTTGTTCCAGAGAGTAGGGAACTCCTCAAAGAATAATGAGTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTGTTCCAGAGAGTAGGGAACTCCTCAAAGAATAATGAGTCTGC  800

seq1  CTCAGTCAGCCTGGGCTCCTGTATGAAGCATCACAATCCGGGCAGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAGCCTGGGCTCCTGTATGAAGCATCACAATCCGGGCAGCTGAA  850

seq1  ATGGCAGGCATTTTTTCCTACACTGCACTAGAGGCCACGGTCAAGGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGCATTTTTTCCTACACTGCACTAGAGGCCACGGTCAAGGTGCT  900

seq1  GACGAAGCTGATCTCTCTGCATCCTCTCCCCCATGTCTTCTCCTGGGTCT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACGAAGCTGATCTCTCTGCATCTTCTCCCCCATGTCTTCTCCTGGGTCT  950

seq1  GCCCA-TTTTCCATCCTCTGAGTGTGCCCTA-CCTGGTGGTGTC-TCTTC  997
      ||||| ||||||||||||||||||||||||| |||||||||||| |||||
seq2  GCCCATTTTTCCATCCTCTGAGTGTGCCCTACCCTGGTGGTGTCTTCTTC  1000

seq1  CTCTTATAAAGCTGTCAGTCTTATTGAATTAGGGCTCCACCCTTATGACT  1047
      ||||||| |||||||||  ||||||||  |||| ||||| ||||||||||
seq2  CTCTTAT-AAGCTGTCATGCTTATTGA--TAGGCCTCCA-CCTTATGACT  1046

seq1  TCATTTAACCATAACCTCTGTGGTGGTTTGAATAGTAGTGCCCATGGGAA  1097
      |||||||  ||  |||||||  |||||| |||||||||||||  || |||
seq2  TCATTTA--CAATACCTCTGGTGTGGTTCGAATAGTAGTGCCACTGCGAA  1094

seq1  GTGG-CACTGTTA  1109
      | || ||||||||
seq2  GGGGCCACTGTTA  1107