BAC Information

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BAC

Clone NameB6Ng01-201I19
Chromosome11 (Build37)
Map Location 104,453,659 - 104,588,201
singlet/doubletdoublet
Overlap geneItgb3, LOC666739, LOC629960
Upstream geneGm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959
Downstream geneLOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201I19.bB6Ng01-201I19.g
ACCGA022291GA022292
length803723
definitionB6Ng01-201I19.b B6Ng01-201I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,453,659 - 104,454,457)(104,587,479 - 104,588,201)
sequence
gaattcttaaccataaaagactctcgcaggcctctgtgtactcctttttc
caagaacaggctttgtgctttgctatcatattttccgggggggcgggggg
aggggtcagagatccatacaaggtcaagaagtgctgtttggagcctttgt
gggattctgtttatcttctcactggatgttttgacattgcatctggccag
gccagtcttcctcccaggccaccatgaacttgacaacagttcttctcatt
tttcccagaacgtgtgttttatttccatcccctggtccctgacccctgac
ccctgacccttgcccttccttgggggcttactttggtttagggaggcagt
tgctgctttttctcctgtggtccctcttttggcaatgggaacgtcctccc
ggaactcctctgcctcagctcaggggttgtctcatcacagagccggcctg
ctcctgctctgcttcctgacccttagggttacacctgtttgttgccatgc
cccgtgctcccccggtgctccttccagaactttctggatctgtgtagggc
acgtgcccctcacctggatgcagactcccctactactggagtcacatttc
caatgtccttttctcagagcctgatgctttgcactgggcttccatcttcc
gaggaccacggtcgtgttccctccctgtctttggcgctcagcacttacag
gctccttcccctcctagtttagctttttctttaggatggagtccatttgt
caaataagaataattttcatctcacgaacattgggtcatatgttaaaaga
gta
gaattctccattctcctgcctcagccttctaaatgtgggaactacagagg
tacgctccaccacgccccacataaccaagttctctatgttctacttgatc
tttttcttttcagcctaattgtttttcctcgaactcattctaaatcaaat
tttctacctaccatcatagtcaggaaagttgtgttccttggagactgccg
tgataaagtcatctaaattcaccattccactttctgtaaaataaagaatt
taaattgcacaatctggtatattttacattaaaaatatgtttcattttta
ttagattaagagaaaaactttcccaatcctatactctttctaaaatgagt
ttttctgaattaggacacttcgtatcattttttcccttttggtatctttg
agatcataattttttttaaaatatttgtttatttacttattttatttact
tgtttgttttacaccagaaaaaggcatcagatcccactacagatggtcat
gagccaccatgtggttgcctagaattgaactcaggacctctggaagagca
atcagtgctcttaactgctgagccatctctccagccctaaagatcataat
ttaattacaacacttctcccttcccttcagtccctccaaatcttcttata
ttctcctccctgttctccttcaaattcatgctctctgttgtttactaatt
gttcttgtgtgtgcacgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104453659_104454457
seq2: B6Ng01-201I19.b_44_846

seq1  GAATTCTTAACCATAAAAGACTCTCGCAGGCCTCTGTGTACTCCTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACCATAAAAGACTCTCGCAGGCCTCTGTGTACTCCTTTTTC  50

seq1  CAAGAACAGGCTTTGTGCTTTGCTATCATATTTTCCGGGGGGGCGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACAGGCTTTGTGCTTTGCTATCATATTTTCCGGGGGGGCGGGGGG  100

seq1  AGGGGTCAGAGATCCATACAAGGTCAAGAAGTGCTGTTTGGAGCCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCAGAGATCCATACAAGGTCAAGAAGTGCTGTTTGGAGCCTTTGT  150

seq1  GGGATTCTGTTTATCTTCTCACTGGATGTTTTGACATTGCATCTGGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCTGTTTATCTTCTCACTGGATGTTTTGACATTGCATCTGGCCAG  200

seq1  GCCAGTCTTCCTCCCAGGCCACCATGAACTTGACAACAGTTCTTCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTTCCTCCCAGGCCACCATGAACTTGACAACAGTTCTTCTCATT  250

seq1  TTTCCCAGAACGTGTGTTTTATTTCCATCCCCTGGTCCCTGACCCCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGAACGTGTGTTTTATTTCCATCCCCTGGTCCCTGACCCCTGAC  300

seq1  CCCTGACCCTTGCCCTTCCTTGGGGGCTTACTTTGGTTTAGGGAGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCCTTGCCCTTCCTTGGGGGCTTACTTTGGTTTAGGGAGGCAGT  350

seq1  TGCTGCTTTTTCTCCTGTGGTCCCTCTTTTGGCAATGGGAACGTCCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTTTTCTCCTGTGGTCCCTCTTTTGGCAATGGGAACGTCCTCCC  400

seq1  GGAACTCCTCTGCCTCAGCTCAGGGGTTGTCTCATCACAGAGCCGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCCTCTGCCTCAGCTCAGGGGTTGTCTCATCACAGAGCCGGCCTG  450

seq1  CTCCTGCTCTGCTTCCTGACCCTTAGGGTTACACCTGTTTGTTGCCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTCTGCTTCCTGACCCTTAGGGTTACACCTGTTTGTTGCCATGC  500

seq1  CCCGTGCTCCCCCGGTGCTCCTTCCAGAACTTTCTGGATCTGTGTAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCTCCCCCGGTGCTCCTTCCAGAACTTTCTGGATCTGTGTAGGGC  550

seq1  ACGTGCCCCTCACCTGGATGCAGACTCCCCTACTACTGGAGTCACATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCCCTCACCTGGATGCAGACTCCCCTACTACTGGAGTCACATTTC  600

seq1  CAATGTCCTTTTCTCAGAGCCTGATGCTTTGCACTGGGCTTCCATCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCCTTTTCTCAGAGCCTGATGCTTTGCACTGGGCTTCCATCTTCC  650

seq1  GAGGACCACGGTCGTGTTCCCTCCCTGTCTTTGGCGCTCAGCACTTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCACGGTCGTGTTCCCTCCCTGTCTTTGGCGCTCAGCACTTACAG  700

seq1  GCTCCTTCCCCTCCTAGTTTAGC-TTTTCTTTAGGATGGAGTCCA-TTGT  748
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  GCTCCTTCCCCTCCTAGTTTAGCTTTTTCTTTAGGATGGAGTCCATTTGT  750

seq1  CAAATAAGAATAATTTCCATCTCACGAACATT-GGTCATATG-TAAAAGA  796
      |||||||||||||||| ||||||||||||||| ||||||||| |||||||
seq2  CAAATAAGAATAATTTTCATCTCACGAACATTGGGTCATATGTTAAAAGA  800

seq1  GTA  799
      |||
seq2  GTA  803

seq1: chr11_104587479_104588201
seq2: B6Ng01-201I19.g_67_789 (reverse)

seq1  CACACACGTGCACACACAAGAACAATTAGTAAACAACAGAGAGCATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGTGCACACACAAGAACAATTAGTAAACAACAGAGAGCATGAAT  50

seq1  TTGAAGGAGAACAGGGAGGAGAATATAAGAAGATTTGGAGGGACTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAGAACAGGGAGGAGAATATAAGAAGATTTGGAGGGACTGAAGG  100

seq1  GAAGGGAGAAGTGTTGTAATTAAATTATGATCTTTAGGGCTGGAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGAAGTGTTGTAATTAAATTATGATCTTTAGGGCTGGAGAGATG  150

seq1  GCTCAGCAGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGAGTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGAGTTCAAT  200

seq1  TCTAGGCAACCACATGGTGGCTCATGACCATCTGTAGTGGGATCTGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAACCACATGGTGGCTCATGACCATCTGTAGTGGGATCTGATGC  250

seq1  CTTTTTCTGGTGTAAAACAAACAAGTAAATAAAATAAGTAAATAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGGTGTAAAACAAACAAGTAAATAAAATAAGTAAATAAACAAA  300

seq1  TATTTTAAAAAAAATTATGATCTCAAAGATACCAAAAGGGAAAAAATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAAAAAATTATGATCTCAAAGATACCAAAAGGGAAAAAATGAT  350

seq1  ACGAAGTGTCCTAATTCAGAAAAACTCATTTTAGAAAGAGTATAGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGTGTCCTAATTCAGAAAAACTCATTTTAGAAAGAGTATAGGATTG  400

seq1  GGAAAGTTTTTCTCTTAATCTAATAAAAATGAAACATATTTTTAATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTTTTCTCTTAATCTAATAAAAATGAAACATATTTTTAATGTAA  450

seq1  AATATACCAGATTGTGCAATTTAAATTCTTTATTTTACAGAAAGTGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCAGATTGTGCAATTTAAATTCTTTATTTTACAGAAAGTGGAAT  500

seq1  GGTGAATTTAGATGACTTTATCACGGCAGTCTCCAAGGAACACAACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTAGATGACTTTATCACGGCAGTCTCCAAGGAACACAACTTTC  550

seq1  CTGACTATGATGGTAGGTAGAAAATTTGATTTAGAATGAGTTCGAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTATGATGGTAGGTAGAAAATTTGATTTAGAATGAGTTCGAGGAAA  600

seq1  AACAATTAGGCTGAAAAGAAAAAGATCAAGTAGAACATAGAGAACTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAGGCTGAAAAGAAAAAGATCAAGTAGAACATAGAGAACTTGGT  650

seq1  TATGTGGGGCGTGGTGGAGCGTACCTCTGTAGTTCCCACATTTAGAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGGCGTGGTGGAGCGTACCTCTGTAGTTCCCACATTTAGAAGGC  700

seq1  TGAGGCAGGAGAATGGAGAATTC  723
      |||||||||||||||||||||||
seq2  TGAGGCAGGAGAATGGAGAATTC  723