BAC Information

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BAC

Clone NameB6Ng01-201M04
Chromosome11 (Build37)
Map Location 39,346,578 - 39,552,320
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201M04.bB6Ng01-201M04.g
ACCGA022441GA022442
length5851,039
definitionB6Ng01-201M04.b B6Ng01-201M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,346,578 - 39,347,168)(39,551,279 - 39,552,320)
sequence
aacagtaattattgattatattcattagtaaacataactttttacaagta
aaacacatgaaaatatttacataatgtgacaatatatcccataatcactc
aattctattataagacattttctttttagtaagaaaatatagtcatttta
cataaaacatcatctaagaaaaaagaaaatacatgttaaaattatacatt
tttaaattggtggggtaagaaaataaaggttagtttgctgcttatagaat
agacagactttagagtagccttattagatgattaggcatcagtgagatgt
ataataataataatatttgagttgatatatcatgccatgctgttgaaata
ctagccgagacttattggtagttgatggctgggtagggaaggaatgttgc
tctacttcagtattggggcccaatataggttgtccattccccagtagatg
ttaccatataccaacaaagatataccttgggttaactaaaaggggcaggt
tagaaataagaataaaagagggaaggctaaaaggaagacaaggacgataa
agaagtcaagaagttgggaggttggtatggaagct

gaattctgaagagcagaatgcctgtagagtaaagatggctgtcattcaag
agatttcaggggaaaataagaaatattttatagagtaaactaaaggtatt
gagaactgtgatacgttttctctgtatcctgggactttgagtaagattga
attgataaatgacagactaattgatcaagcagagggaattgtatggcagc
agatctttcaggttatggcatagttatcactgtctggttttagccaaact
tatagaatttggagcaaacatagggcagaaaccattttttagggcttgta
gtttatcttcctggtcctggcattcccctatactggggcatataaccttc
acaggaccaagggtctcttctcccactgatgaccaactaggacatcttct
gctacatatgcagctaaagacatgagtcccaccatgtgttttcttttgct
ggtggtttagtcctggaggctctgggagtactggttagttcatattgtca
ttcctcctatggggctgcaagccccttcagctccttgggctcattcattg
gggacccggtactttgtccaaaggatggctatgagcatccacttttgtat
ttgtcaggcactggcagaaactctcaaggaacagctatatcaggcttctg
tcagcatgttcttgttggcctttacaacagtgtctgggtttggtgattgt
atatgacatagatccccaggtggggcagtctctggatggtcattcttcag
aaaaaaaaaaaggtgtttttaataattattttaacttgagataagagctg
tggtgcctcgtgtttgcaaagactctcataaaggagtatttcccattctt
catctatccaaatactcagaagtctatcatagtctttttttaaggtggaa
gaccttgatgtctttagtctacagctggttttcagagttaggtagtgcaa
aacttatgggggtccacaaagccatcaggattttaaaggaggaaagcaac
tggacgttgagctttaaggccgagaccttacagtgtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39346578_39347168
seq2: B6Ng01-201M04.b_47_637

seq1  GAATTCAACAGTAATTATTGATTATATTCATTAGTAAACATAACTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTAATTATTGATTATATTCATTAGTAAACATAACTTTTTA  50

seq1  CAAGTAAAACACATGAAAATATTTACATAATGTGACAATATATCCCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAACACATGAAAATATTTACATAATGTGACAATATATCCCATAA  100

seq1  TCACTCAATTCTATTATAAGACATTTTCTTTTTAGTAAGAAAATATAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAATTCTATTATAAGACATTTTCTTTTTAGTAAGAAAATATAGTC  150

seq1  ATTTTACATAAAACATCATCTAAGAAAAAAGAAAATACATGTTAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATAAAACATCATCTAAGAAAAAAGAAAATACATGTTAAAATTA  200

seq1  TACATTTTTAAATTGGTGGGGTAAGAAAATAAAGGTTAGTTTGCTGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTAAATTGGTGGGGTAAGAAAATAAAGGTTAGTTTGCTGCTTA  250

seq1  TAGAATAGACAGACTTTAGAGTAGCCTTATTAGATGATTAGGCATCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGACAGACTTTAGAGTAGCCTTATTAGATGATTAGGCATCAGTG  300

seq1  AGATGTATAATAATAATAATATTTGAGTTGATATATCATGCCATGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATAATAATAATAATATTTGAGTTGATATATCATGCCATGCTGTT  350

seq1  GAAATACTAGCCGAGACTTATTGGTAGTTGATGGCTGGGTAGGGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTAGCCGAGACTTATTGGTAGTTGATGGCTGGGTAGGGAAGGAA  400

seq1  TGTTGCTCTACTTCAGTATTGGGGCCCAATATAGGTTGTCCATTCCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCTACTTCAGTATTGGGGCCCAATATAGGTTGTCCATTCCCCAG  450

seq1  TAGATGTTACCATATACCAACAAAGATATACCTTGGGTTAACTAAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTACCATATACCAACAAAGATATACCTTGGGTTAACTAAAAGGG  500

seq1  GCAGGTTAGAAATAAGAATAAAAGAGGGAAGGCTAAAAGGAAGACAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAGAAATAAGAATAAAAGAGGGAAGGCTAAAAGGAAGACAAGGA  550

seq1  CGATAAAGAAGTCAAGAAGTTGGGAGGTTGGTATGGAAGCT  591
      |||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAAGAAGTCAAGAAGTTGGGAGGTTGGTATGGAAGCT  591


seq1: chr11_39551279_39552320
seq2: B6Ng01-201M04.g_65_1103 (reverse)

seq1  AATACACTTGTAAGGTCTCTGGCCCTAAAAGCTCACGTTCCAGTTTGCTT  50
      ||||||| |||||||||||  | ||| ||||||||   ||||| ||||||
seq2  AATACAC-TGTAAGGTCTC--GGCCTTAAAGCTCAACGTCCAG-TTGCTT  46

seq1  TCCTTCCTTTAAAATCCTGATGGCTTTGT-GACCCCCATAAGTTTTGCAC  99
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCC-TCCTTTAAAATCCTGATGGCTTTGTGGACCCCCATAAGTTTTGCAC  95

seq1  TACCTAACTCTGAAAACCAGCTGTAGACTAAAGACATCAAGGTCTTCCAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAACTCTGAAAACCAGCTGTAGACTAAAGACATCAAGGTCTTCCAC  145

seq1  CTT-AAAAAAGACTATGATAGACTTCTGAGTATTTGGATAGATGAAGAAT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAGACTATGATAGACTTCTGAGTATTTGGATAGATGAAGAAT  195

seq1  GGGAAATACTCCTTTATGAGAGTCTTTGCAAACACGAGGCACCACAGCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATACTCCTTTATGAGAGTCTTTGCAAACACGAGGCACCACAGCTC  245

seq1  TTATCTCAAGTTAAAATAATTATTAAAAACACCTTTTTTTTTTTCTGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAAGTTAAAATAATTATTAAAAACACCTTTTTTTTTTTCTGAAG  295

seq1  AATGACCATCCAGAGACTGCCCCACCTGGGGATCTATGTCATATACAATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCATCCAGAGACTGCCCCACCTGGGGATCTATGTCATATACAATC  345

seq1  ACCAAACCCAGACACTGTTGTAAAGGCCAACAAGAACATGCTGACAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCCAGACACTGTTGTAAAGGCCAACAAGAACATGCTGACAGAAG  395

seq1  CCTGATATAGCTGTTCCTTGAGAGTTTCTGCCAGTGCCTGACAAATACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATATAGCTGTTCCTTGAGAGTTTCTGCCAGTGCCTGACAAATACAA  445

seq1  AAGTGGATGCTCATAGCCATCCTTTGGACAAAGTACCGGGTCCCCAATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATGCTCATAGCCATCCTTTGGACAAAGTACCGGGTCCCCAATGA  495

seq1  ATGAGCCCAAGGAGCTGAAGGGGCTTGCAGCCCCATAGGAGGAATGACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCAAGGAGCTGAAGGGGCTTGCAGCCCCATAGGAGGAATGACAA  545

seq1  TATGAACTAACCAGTACTCCCAGAGCCTCCAGGACTAAACCACCAGCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTAACCAGTACTCCCAGAGCCTCCAGGACTAAACCACCAGCAAA  595

seq1  AGAAAACACATGGTGGGACTCATGTCTTTAGCTGCATATGTAGCAGAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACATGGTGGGACTCATGTCTTTAGCTGCATATGTAGCAGAAGA  645

seq1  TGTCCTAGTTGGTCATCAGTGGGAGAAGAGACCCTTGGTCCTGTGAAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGTTGGTCATCAGTGGGAGAAGAGACCCTTGGTCCTGTGAAGGT  695

seq1  TATATGCCCCAGTATAGGGGAATGCCAGGACCAGGAAGATAAACTACAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCCAGTATAGGGGAATGCCAGGACCAGGAAGATAAACTACAAG  745

seq1  CCCTAAAAAATGGTTTCTGCCCTATGTTTGCTCCAAATTCTATAAGTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAAATGGTTTCTGCCCTATGTTTGCTCCAAATTCTATAAGTTTG  795

seq1  GCTAAAACCAGACAGTGATAACTATGCCATAACCTGAAAGATCTGCTGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACCAGACAGTGATAACTATGCCATAACCTGAAAGATCTGCTGCC  845

seq1  ATACAATTCCCTCTGCTTGATCAATTAGTCTGTCATTTATCAATTCAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTCCCTCTGCTTGATCAATTAGTCTGTCATTTATCAATTCAATC  895

seq1  TTACTCAAAGTCCCAGGATACAGAGAAAACGTATCACAGTTCTCAATACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAGTCCCAGGATACAGAGAAAACGTATCACAGTTCTCAATACC  945

seq1  TTTAGTTTACTCTATAAAATATTTCTTATTTTCCCCTGAAATCTCTTGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTACTCTATAAAATATTTCTTATTTTCCCCTGAAATCTCTTGAA  995

seq1  TGACAGCCATCTTTACTCTACAGGCATTCTGCTCTTCAGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCATCTTTACTCTACAGGCATTCTGCTCTTCAGAATTC  1039


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