BAC Information

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BAC

Clone NameB6Ng01-202B17
Chromosome11 (Build37)
Map Location 20,207,765 - 20,208,882
singlet/doubletsinglet
Overlap geneSlc1a4
Upstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544
Downstream geneLOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1, Vps54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202B17.bB6Ng01-202B17.g
ACCGA022693GA022694
length1,1141,038
definitionB6Ng01-202B17.b B6Ng01-202B17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaccagctcacctttacagaggagacactgagcattggatctt
ttttcaaaggaaatcgcagacacacacacattgaagttttaagccaggcc
taacaatgtagggaagagtaacgggctcacagaatggtgaaaatctgtcc
tgcgttcaggtctacgttgttgagctgggcaatgaacactgcggccacac
actggaagatggctgctccgtccatgttgaccgtggccccaatggggagg
atgaacctgctgatcctcttgtctacaccattgttctcctcaatgcactt
catcatagacggaagggttgctgagctagagatggggagggaagcaacca
ggcatggaaatggtccccagccaggtgaacaccagaacacatcggtatgg
cggctcagccagtgtcctgctgccttccctccaaatagggaagctagcta
ggtctctttcaaagttgtcagtgtaacttcaagtcccacgggactcaaac
atgacttccaggattcacttgctacattactccagtggattcccctaagg
gccacatcttgcctcagtacacagtgttcccaagagaatcactgggctca
cctcactctgtacccattcggttggttcccaagcccactcacctggaaca
ggtcgcaaaagctgtcgcaaatggggtgaggaggcccaggaggaacgtga
acgggtttttccttgtgaaagcaaaatacacaagaggcaggacaattcct
ccgtggatgacatggcccagcatagatgcgaagatgtatttcccgagact
ggtcaccagcatgacgatgtccttcatttctacaatcttgcttccgatca
ggaacatgatgcctataggaacatacctaggaacaagcatagatgctcat
caggaaggtggtgagactgggaggtactgagcctcccagggactttcaac
tggatcttctctgtttctccatagaggaactctaacacacacaagaaaga
tgagtgggggtgacttcattttaataaccgtttgtgtgactgagaaaatg
agatgatcatccctctgggtggagtgctcccaaccaactagatgtctccc
ctctggtgtacaca
gaattctgggggcgtgaaaaagtccaggagacagtaatataatcccagga
ggaggtaggattccaataggctgctcccgaggtctcacaaccccagctgg
cacaataaaaatcagctttgccaccgcacttatgatggaaagctcagcca
caatagtgccctgggcaaacataaaaatctgtatcttaaagtaaggcttg
cctgatagaattatcacagtcaaatctgactgactgatgaactgaaatcc
agaaattgtgaggattataactctgggtgtggacacattatcttctgggg
ctttatataaatctagctggtattcaagaccccaaggggccactactccc
tgtgctgatctacagagatgggggtaaggctggctggccaccaaatattg
gtggaagtcttggaagtagcccagacaacatcaattctctctgagaggac
cacccaagtgtaattccaagggatgtgtctattattaggagatttgggtg
gaggcagttgaaggatggtggttattctggtcagccacaggatcatgagt
atcctcacctggggcagcatctggaaaagaaatgagatttgtctcaggag
gagatggtcactccattctagacacaggtgggttaatagtttttactagc
ctctctggtaaccatcttggactaggattttctttgtcatagatgcaagc
agaccctcaaataaggatgggatctggtcctttccactgtccagtgaggg
gatctctccatctcactaatgtgtgagaatcttgtggtttaggatgccac
aggtggtcgttgcccaacctgccctcattgtccagggacaagaagtttaa
gaacaaatgattgagcctgtttctaagcgtcaaagggggagttagcatct
gtaacttcagccaagcactgagccatatttttttaagtctgatggatttg
ttctatgatgcccttgccctgaggatattagggaacaccagtgaactggt
tgaatgtcaaacttggaacaaaacttgtttgcaaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20207765_20208882
seq2: B6Ng01-202B17.b_51_1164

seq1  GAATTCTCACCAGCTCACCTTTACAGAGGAGACACTGAGCATTGGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCAGCTCACCTTTACAGAGGAGACACTGAGCATTGGATCTT  50

seq1  TTTTCAAAGGAAATCGCAGACACACACACATTGAAGTTTTAAGCCAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGGAAATCGCAGACACACACACATTGAAGTTTTAAGCCAGGCC  100

seq1  TAACAATGTAGGGAAGAGTAACGGGCTCACAGAATGGTGAAAATCTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGTAGGGAAGAGTAACGGGCTCACAGAATGGTGAAAATCTGTCC  150

seq1  TGCGTTCAGGTCTACGTTGTTGAGCTGGGCAATGAACACTGCGGCCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTCAGGTCTACGTTGTTGAGCTGGGCAATGAACACTGCGGCCACAC  200

seq1  ACTGGAAGATGGCTGCTCCGTCCATGTTGACCGTGGCCCCAATGGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGATGGCTGCTCCGTCCATGTTGACCGTGGCCCCAATGGGGAGG  250

seq1  ATGAACCTGCTGATCCTCTTGTCTACACCATTGTTCTCCTCAATGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTGCTGATCCTCTTGTCTACACCATTGTTCTCCTCAATGCACTT  300

seq1  CATCATAGACGGAAGGGTTGCTGAGCTAGAGATGGGGAGGGAAGCAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGACGGAAGGGTTGCTGAGCTAGAGATGGGGAGGGAAGCAACCA  350

seq1  GGCATGGAAATGGTCCCCAGCCAGGTGAACACCAGAACACATCGGTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGAAATGGTCCCCAGCCAGGTGAACACCAGAACACATCGGTATGG  400

seq1  CGGCTCAGCCAGTGTCCTGCTGCCTTCCCTCCAAATAGGGAAGCTAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCAGCCAGTGTCCTGCTGCCTTCCCTCCAAATAGGGAAGCTAGCTA  450

seq1  GGTCTCTTTCAAAGTTGTCAGTGTAACTTCAAGTCCCACGGGACTCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTTCAAAGTTGTCAGTGTAACTTCAAGTCCCACGGGACTCAAAC  500

seq1  ATGACTTCCAGGATTCACTTGCTACATTACTCCAGTGGATTCCCCTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCCAGGATTCACTTGCTACATTACTCCAGTGGATTCCCCTAAGG  550

seq1  GCCACATCTTGCCTCAGTACACAGTGTTCCCAAGAGAATCACTGGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATCTTGCCTCAGTACACAGTGTTCCCAAGAGAATCACTGGGCTCA  600

seq1  CCTCACTCTGTACCCATTCGGTTGGTTCCCAAGCCCACTCACCTGGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCTGTACCCATTCGGTTGGTTCCCAAGCCCACTCACCTGGAACA  650

seq1  GGTCGCAAAAGCTGTCGCAAATGGGGTGAGGAGGCCCAGGAGGAACGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCAAAAGCTGTCGCAAATGGGGTGAGGAGGCCCAGGAGGAACGTGA  700

seq1  ACGGGTTTTTCCTTGTGAAAGCAAAATACACAAGAGGCAGGACAATTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTTTTTCCTTGTGAAAGCAAAATACACAAGAGGCAGGACAATTCCT  750

seq1  CCGTGGATGACATGGCCCAGCATAGATGCGAAGATGTATTTCCCGAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGATGACATGGCCCAGCATAGATGCGAAGATGTATTTCCCGAGACT  800

seq1  GGTCACCAGCATGACGATGTCCTTCATTTCTACAATCTTGCTTCCGATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCAGCATGACGATGTCCTTCATTTCTACAATCTTGCTTCCGATCA  850

seq1  GGAACATGATGCCTATAGGAACATACCTAGGAACAAGCATAGATGCTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGATGCCTATAGGAACATACCTAGGAACAAGCATAGATGCTCAT  900

seq1  CAGGAAGGTGGTGAGACTGGGAGGTACTGAGCCTCCCAGGGACTTTCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTGGTGAGACTGGGAGGTACTGAGCCTCCCAGGGACTTTCAAC  950

seq1  TGGATCTTCTCTGTTTCTCCATAGAGGAACTCTAAACACACACAAAGAAA  1000
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TGGATCTTCTCTGTTTCTCCATAGAGGAACTCT-AACACACAC-AAGAAA  998

seq1  GATGAGGTGGGGTGACTTCATTTTAAATAAACCGTTTGTGTGACTGAGAA  1050
      ||||||  ||||||||||||||||||   ||||||||||||||||||| |
seq2  GATGAGTGGGGGTGACTTCATTTTAA--TAACCGTTTGTGTGACTGAG-A  1045

seq1  AAATGAAGATGATCAT-CCTCTGGGT-GAGTGCTCCCACACACTTAGATG  1098
      ||||| |||||||||| ||||||||| |||||||||||  ||  ||||||
seq2  AAATG-AGATGATCATCCCTCTGGGTGGAGTGCTCCCAACCAACTAGATG  1094

seq1  TCCTCCCTCTGGTGTACACA  1118
      ||  ||||||||||||||||
seq2  TCTCCCCTCTGGTGTACACA  1114